Wall clock time and date at job start Tue Mar 31 2020 15:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.87098 * 2 1 4 4 C 1.50707 * 109.47301 * 59.29730 * 3 2 1 5 5 C 1.38238 * 119.99792 * 90.00016 * 4 3 2 6 6 C 1.38235 * 119.99712 * 179.97438 * 5 4 3 7 7 C 1.38234 * 120.00220 * 359.97124 * 6 5 4 8 8 C 1.38233 * 120.00037 * 0.28719 * 7 6 5 9 9 C 1.38234 * 120.00179 * 269.97953 * 4 3 2 10 10 C 1.54321 * 109.87952 * 121.01298 * 2 1 3 11 11 C 1.55159 * 102.94205 * 97.38528 * 10 2 1 12 12 C 1.54911 * 101.58300 * 35.49431 * 11 10 2 13 13 N 1.47015 * 109.88506 * 238.98434 * 2 1 3 14 14 C 1.34780 * 125.64652 * 59.31949 * 13 2 1 15 15 O 1.21270 * 120.00364 * 0.02562 * 14 13 2 16 16 C 1.50705 * 119.99668 * 180.02562 * 14 13 2 17 17 H 1.08998 * 109.47164 * 319.99940 * 16 14 13 18 18 N 1.46896 * 109.46916 * 200.00388 * 16 14 13 19 19 C 1.52995 * 109.47093 * 80.00317 * 16 14 13 20 20 C 1.53006 * 109.47354 * 184.99681 * 19 16 14 21 21 C 1.50690 * 109.47367 * 179.97438 * 20 19 16 22 22 H 1.08003 * 120.00159 * 0.02562 * 21 20 19 23 23 C 1.37877 * 120.00166 * 180.02562 * 21 20 19 24 24 N 1.31516 * 119.99959 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00237 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47504 * 90.00066 * 25 23 21 27 27 H 1.48504 * 109.47238 * 209.99897 * 25 23 21 28 28 H 1.48498 * 109.47072 * 329.99628 * 25 23 21 29 29 H 1.09001 * 109.47260 * 60.70429 * 1 2 3 30 30 H 1.09009 * 109.46813 * 180.70205 * 1 2 3 31 31 H 1.08996 * 109.47346 * 300.70071 * 1 2 3 32 32 H 1.09005 * 109.47610 * 299.30033 * 3 2 1 33 33 H 1.09000 * 109.47256 * 179.29374 * 3 2 1 34 34 H 1.08005 * 120.00068 * 359.97438 * 5 4 3 35 35 H 1.07999 * 119.99770 * 179.97438 * 6 5 4 36 36 H 1.08002 * 119.99744 * 180.02562 * 7 6 5 37 37 H 1.07998 * 120.00395 * 179.72811 * 8 7 6 38 38 H 1.07999 * 119.99968 * 359.97438 * 9 4 3 39 39 H 1.09003 * 110.71843 * 215.74194 * 10 2 1 40 40 H 1.08994 * 110.72737 * 339.02092 * 10 2 1 41 41 H 1.08996 * 111.00894 * 153.57480 * 11 10 2 42 42 H 1.09004 * 110.99995 * 277.42844 * 11 10 2 43 43 H 1.09005 * 110.35878 * 81.83187 * 12 11 10 44 44 H 1.09002 * 110.36923 * 204.04462 * 12 11 10 45 45 H 1.00900 * 111.00234 * 299.99826 * 18 16 14 46 46 H 1.00896 * 111.00214 * 63.95439 * 18 16 14 47 47 H 1.09003 * 109.47169 * 304.99831 * 19 16 14 48 48 H 1.08999 * 109.47119 * 64.99915 * 19 16 14 49 49 H 1.08998 * 109.46645 * 300.00229 * 20 19 16 50 50 H 1.08999 * 109.46816 * 60.00049 * 20 19 16 51 51 H 0.97000 * 120.00132 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0500 1.4389 0.0000 4 6 1.5385 2.1579 1.2217 5 6 2.2721 2.1378 2.3932 6 6 1.8031 2.7978 3.5137 7 6 0.6010 3.4784 3.4624 8 6 -0.1351 3.4941 2.2925 9 6 0.3361 2.8380 1.1707 10 6 2.0548 -0.7477 1.2438 11 6 2.3557 -2.1673 0.6946 12 6 2.8618 -1.8472 -0.7341 13 7 2.0301 -0.7124 -1.1848 14 6 1.7717 -0.3836 -2.4661 15 8 1.0719 0.5744 -2.7171 16 6 2.3525 -1.2068 -3.5870 17 1 3.3763 -1.4869 -3.3392 18 7 2.3469 -0.4189 -4.8268 19 6 1.5110 -2.4696 -3.7814 20 6 2.1699 -3.3648 -4.8328 21 6 1.3414 -4.6089 -5.0238 22 1 0.4351 -4.7472 -4.4527 23 6 1.7401 -5.5708 -5.9276 24 7 2.8439 -5.4027 -6.6227 25 14 0.7127 -7.1127 -6.1649 26 1 -0.2911 -6.8791 -7.2340 27 1 1.5962 -8.2413 -6.5535 28 1 0.0163 -7.4436 -4.8958 29 1 -0.3634 0.5029 -0.8962 30 1 -0.3633 -1.0277 0.0126 31 1 -0.3634 0.5247 0.8836 32 1 1.7006 1.9516 -0.8962 33 1 3.1399 1.4313 0.0127 34 1 3.2115 1.6064 2.4331 35 1 2.3760 2.7818 4.4291 36 1 0.2349 3.9944 4.3377 37 1 -1.0763 4.0221 2.2537 38 1 -0.2366 2.8543 0.2552 39 1 2.9641 -0.2792 1.6203 40 1 1.2908 -0.7886 2.0201 41 1 3.1311 -2.6577 1.2830 42 1 1.4504 -2.7735 0.6616 43 1 3.9135 -1.5618 -0.7088 44 1 2.7183 -2.7068 -1.3889 45 1 1.4083 -0.1467 -5.0781 46 1 2.9477 0.3876 -4.7455 47 1 1.4417 -3.0091 -2.8367 48 1 0.5112 -2.1921 -4.1155 49 1 2.2391 -2.8253 -5.7774 50 1 3.1696 -3.6423 -4.4987 51 1 3.1246 -6.0795 -7.2583 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595958814.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:42 Heat of formation + Delta-G solvation = -26.495306 kcal Electronic energy + Delta-G solvation = -29045.487566 eV Core-core repulsion = 25329.599966 eV Total energy + Delta-G solvation = -3715.887600 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.83311 -39.35576 -37.77698 -35.25853 -33.80622 -32.77120 -31.64391 -31.14575 -30.45231 -30.07578 -27.06796 -26.41923 -25.68291 -23.97240 -22.78812 -22.27245 -21.66536 -20.70072 -19.88711 -18.38831 -17.08782 -16.72833 -16.39039 -16.18675 -15.45318 -15.32312 -15.28844 -15.13868 -14.56822 -14.28391 -14.00713 -13.71996 -13.65371 -13.51552 -13.24084 -12.97299 -12.92494 -12.66951 -12.36253 -12.28494 -12.04387 -11.92495 -11.66979 -11.49304 -11.31059 -11.17559 -11.09801 -10.88885 -10.79443 -10.77485 -10.58491 -10.52653 -9.97403 -9.76629 -9.35117 -9.12524 -9.02811 -8.99465 -8.49094 -8.33523 -8.18094 -5.93781 -3.95884 1.12732 1.17802 2.80517 3.02671 3.34699 3.41005 3.43706 3.57405 4.30869 4.43818 4.50037 4.59010 4.67697 4.74792 4.78424 4.90863 4.91430 5.01912 5.05319 5.09065 5.15845 5.29602 5.32506 5.41725 5.51145 5.51979 5.55965 5.60738 5.67229 5.72526 5.76175 5.80603 5.83326 5.86093 5.87730 6.01020 6.06239 6.23311 6.25634 6.29261 6.41744 6.46815 6.54757 6.68191 6.78833 7.09542 7.42813 7.65097 7.76177 7.81235 7.96251 8.13437 8.33678 8.48648 9.12097 9.67233 11.17079 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023010 B = 0.002546 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.588900 B =10996.981541 C =11359.609428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.171 3.829 3 C -0.087 4.087 4 C -0.068 4.068 5 C -0.117 4.117 6 C -0.120 4.120 7 C -0.128 4.128 8 C -0.120 4.120 9 C -0.112 4.112 10 C -0.122 4.122 11 C -0.133 4.133 12 C 0.092 3.908 13 N -0.609 5.609 14 C 0.502 3.498 15 O -0.551 6.551 16 C 0.081 3.919 17 H 0.095 0.905 18 N -0.807 5.807 19 C -0.094 4.094 20 C 0.032 3.968 21 C -0.521 4.521 22 H 0.051 0.949 23 C 0.058 3.942 24 N -0.892 5.892 25 Si 0.888 3.112 26 H -0.281 1.281 27 H -0.287 1.287 28 H -0.275 1.275 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.091 0.909 45 H 0.347 0.653 46 H 0.333 0.667 47 H 0.053 0.947 48 H 0.052 0.948 49 H 0.035 0.965 50 H 0.012 0.988 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.137 15.419 21.778 26.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.086 3.914 3 C -0.125 4.125 4 C -0.069 4.069 5 C -0.135 4.135 6 C -0.138 4.138 7 C -0.146 4.146 8 C -0.138 4.138 9 C -0.130 4.130 10 C -0.160 4.160 11 C -0.171 4.171 12 C -0.030 4.030 13 N -0.344 5.344 14 C 0.290 3.710 15 O -0.429 6.429 16 C -0.035 4.035 17 H 0.113 0.887 18 N -0.334 5.334 19 C -0.132 4.132 20 C -0.005 4.005 21 C -0.560 4.560 22 H 0.070 0.930 23 C -0.143 4.143 24 N -0.532 5.532 25 Si 0.716 3.284 26 H -0.207 1.207 27 H -0.213 1.213 28 H -0.200 1.200 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.109 0.891 45 H 0.161 0.839 46 H 0.145 0.855 47 H 0.072 0.928 48 H 0.071 0.929 49 H 0.053 0.947 50 H 0.031 0.969 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.110 15.194 21.026 25.941 hybrid contribution -0.901 -0.133 0.526 1.052 sum -1.011 15.060 21.552 26.312 Atomic orbital electron populations 1.22207 0.94119 1.02261 1.02968 1.20826 0.94500 0.90833 0.85278 1.20972 1.00421 0.94765 0.96359 1.19791 0.94819 0.97281 0.94999 1.21080 0.99947 0.99811 0.92667 1.21117 0.96476 0.97940 0.98311 1.21121 0.95408 1.00052 0.97991 1.21153 0.99850 0.99589 0.93204 1.21144 0.95856 0.97288 0.98702 1.22770 1.01631 0.95321 0.96280 1.22784 1.02229 0.96803 0.95284 1.22520 0.94574 0.89865 0.96079 1.48840 1.50672 1.30101 1.04760 1.22440 0.80227 0.85200 0.83136 1.90606 1.39055 1.29809 1.83382 1.21811 1.01185 0.94825 0.85635 0.88684 1.59013 1.16345 1.27406 1.30683 1.21654 0.98114 0.92313 1.01159 1.19006 0.94982 0.92633 0.93860 1.21268 1.08723 1.03800 1.22185 0.93043 1.24989 0.95121 0.98291 0.95925 1.69975 1.22707 1.34845 1.25636 0.86660 0.80211 0.83093 0.78394 1.20728 1.21290 1.20024 0.91019 0.92559 0.91754 0.89510 0.91113 0.86199 0.86267 0.86379 0.86225 0.85989 0.90604 0.90198 0.89781 0.90391 0.91307 0.89072 0.83863 0.85525 0.92849 0.92945 0.94710 0.96945 0.93110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 7.80 37.16 0.29 -1.64 16 2 C 0.17 1.94 0.58 -130.85 -0.08 1.87 16 3 C -0.09 -0.98 4.38 -27.88 -0.12 -1.10 16 4 C -0.07 -0.69 4.23 -104.62 -0.44 -1.13 16 5 C -0.12 -1.02 8.64 -39.58 -0.34 -1.36 16 6 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 7 C -0.13 -1.03 10.05 -39.58 -0.40 -1.43 16 8 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 9 C -0.11 -1.12 7.90 -39.58 -0.31 -1.43 16 10 C -0.12 -1.09 4.97 -24.90 -0.12 -1.22 16 11 C -0.13 -1.21 7.09 -24.58 -0.17 -1.38 16 12 C 0.09 1.04 6.42 -2.35 -0.02 1.02 16 13 N -0.61 -8.02 2.83 -155.56 -0.44 -8.46 16 14 C 0.50 7.99 6.66 -10.98 -0.07 7.92 16 15 O -0.55 -9.84 13.81 5.57 0.08 -9.76 16 16 C 0.08 1.38 2.43 -68.87 -0.17 1.22 16 17 H 0.10 1.56 7.69 -51.93 -0.40 1.16 16 18 N -0.81 -13.77 8.44 -5.66 -0.05 -13.82 16 19 C -0.09 -1.91 4.64 -26.73 -0.12 -2.03 16 20 C 0.03 0.82 4.86 -27.88 -0.14 0.69 16 21 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 22 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 23 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 24 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 25 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 29 H 0.07 1.05 6.70 -51.93 -0.35 0.70 16 30 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 31 H 0.06 0.70 6.17 -51.93 -0.32 0.38 16 32 H 0.09 1.18 6.80 -51.93 -0.35 0.83 16 33 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 34 H 0.12 0.88 7.12 -52.48 -0.37 0.51 16 35 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 37 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 38 H 0.12 1.25 8.04 -52.49 -0.42 0.83 16 39 H 0.08 0.60 6.43 -51.93 -0.33 0.26 16 40 H 0.08 0.69 7.83 -51.93 -0.41 0.28 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.09 1.15 6.08 -51.93 -0.32 0.84 16 45 H 0.35 6.01 8.58 -39.29 -0.34 5.67 16 46 H 0.33 4.96 9.06 -39.29 -0.36 4.60 16 47 H 0.05 1.03 6.61 -51.93 -0.34 0.69 16 48 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 49 H 0.03 0.96 7.75 -51.93 -0.40 0.56 16 50 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 51 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 396.53 15.07 5.98 5.98 Total: -1.00 -31.92 396.53 -10.62 -42.54 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -8.48 Total: 9.22 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -3.42 Total: -16.28 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: 0.25 Total: -48.40 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.08 Total: -9.76 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.92 -10.62 -42.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595958814.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.046 kcal (2) G-P(sol) polarization free energy of solvation -31.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds