Wall clock time and date at job start Tue Mar 31 2020 15:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.87098 * 2 1 4 4 C 1.50707 * 109.47301 * 59.29730 * 3 2 1 5 5 C 1.38238 * 119.99792 * 90.00016 * 4 3 2 6 6 C 1.38235 * 119.99712 * 179.97438 * 5 4 3 7 7 C 1.38234 * 120.00220 * 359.97124 * 6 5 4 8 8 C 1.38233 * 120.00037 * 0.28719 * 7 6 5 9 9 C 1.38234 * 120.00179 * 269.97953 * 4 3 2 10 10 C 1.54321 * 109.87952 * 121.01298 * 2 1 3 11 11 C 1.55159 * 102.94205 * 97.38528 * 10 2 1 12 12 C 1.54911 * 101.58300 * 35.49431 * 11 10 2 13 13 N 1.47015 * 109.88506 * 238.98434 * 2 1 3 14 14 C 1.34780 * 125.64652 * 59.31949 * 13 2 1 15 15 O 1.21270 * 120.00364 * 0.02562 * 14 13 2 16 16 C 1.50705 * 119.99668 * 180.02562 * 14 13 2 17 17 H 1.08998 * 109.47164 * 319.99940 * 16 14 13 18 18 N 1.46896 * 109.46916 * 200.00388 * 16 14 13 19 19 C 1.52995 * 109.47093 * 80.00317 * 16 14 13 20 20 C 1.53006 * 109.47354 * 184.99681 * 19 16 14 21 21 C 1.50690 * 109.47367 * 179.97438 * 20 19 16 22 22 H 1.08003 * 120.00159 * 0.02562 * 21 20 19 23 23 C 1.37877 * 120.00166 * 180.02562 * 21 20 19 24 24 N 1.31516 * 119.99959 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00237 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47504 * 90.00066 * 25 23 21 27 27 H 1.48504 * 109.47238 * 209.99897 * 25 23 21 28 28 H 1.48498 * 109.47072 * 329.99628 * 25 23 21 29 29 H 1.09001 * 109.47260 * 60.70429 * 1 2 3 30 30 H 1.09009 * 109.46813 * 180.70205 * 1 2 3 31 31 H 1.08996 * 109.47346 * 300.70071 * 1 2 3 32 32 H 1.09005 * 109.47610 * 299.30033 * 3 2 1 33 33 H 1.09000 * 109.47256 * 179.29374 * 3 2 1 34 34 H 1.08005 * 120.00068 * 359.97438 * 5 4 3 35 35 H 1.07999 * 119.99770 * 179.97438 * 6 5 4 36 36 H 1.08002 * 119.99744 * 180.02562 * 7 6 5 37 37 H 1.07998 * 120.00395 * 179.72811 * 8 7 6 38 38 H 1.07999 * 119.99968 * 359.97438 * 9 4 3 39 39 H 1.09003 * 110.71843 * 215.74194 * 10 2 1 40 40 H 1.08994 * 110.72737 * 339.02092 * 10 2 1 41 41 H 1.08996 * 111.00894 * 153.57480 * 11 10 2 42 42 H 1.09004 * 110.99995 * 277.42844 * 11 10 2 43 43 H 1.09005 * 110.35878 * 81.83187 * 12 11 10 44 44 H 1.09002 * 110.36923 * 204.04462 * 12 11 10 45 45 H 1.00900 * 111.00234 * 299.99826 * 18 16 14 46 46 H 1.00896 * 111.00214 * 63.95439 * 18 16 14 47 47 H 1.09003 * 109.47169 * 304.99831 * 19 16 14 48 48 H 1.08999 * 109.47119 * 64.99915 * 19 16 14 49 49 H 1.08998 * 109.46645 * 300.00229 * 20 19 16 50 50 H 1.08999 * 109.46816 * 60.00049 * 20 19 16 51 51 H 0.97000 * 120.00132 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0500 1.4389 0.0000 4 6 1.5385 2.1579 1.2217 5 6 2.2721 2.1378 2.3932 6 6 1.8031 2.7978 3.5137 7 6 0.6010 3.4784 3.4624 8 6 -0.1351 3.4941 2.2925 9 6 0.3361 2.8380 1.1707 10 6 2.0548 -0.7477 1.2438 11 6 2.3557 -2.1673 0.6946 12 6 2.8618 -1.8472 -0.7341 13 7 2.0301 -0.7124 -1.1848 14 6 1.7717 -0.3836 -2.4661 15 8 1.0719 0.5744 -2.7171 16 6 2.3525 -1.2068 -3.5870 17 1 3.3763 -1.4869 -3.3392 18 7 2.3469 -0.4189 -4.8268 19 6 1.5110 -2.4696 -3.7814 20 6 2.1699 -3.3648 -4.8328 21 6 1.3414 -4.6089 -5.0238 22 1 0.4351 -4.7472 -4.4527 23 6 1.7401 -5.5708 -5.9276 24 7 2.8439 -5.4027 -6.6227 25 14 0.7127 -7.1127 -6.1649 26 1 -0.2911 -6.8791 -7.2340 27 1 1.5962 -8.2413 -6.5535 28 1 0.0163 -7.4436 -4.8958 29 1 -0.3634 0.5029 -0.8962 30 1 -0.3633 -1.0277 0.0126 31 1 -0.3634 0.5247 0.8836 32 1 1.7006 1.9516 -0.8962 33 1 3.1399 1.4313 0.0127 34 1 3.2115 1.6064 2.4331 35 1 2.3760 2.7818 4.4291 36 1 0.2349 3.9944 4.3377 37 1 -1.0763 4.0221 2.2537 38 1 -0.2366 2.8543 0.2552 39 1 2.9641 -0.2792 1.6203 40 1 1.2908 -0.7886 2.0201 41 1 3.1311 -2.6577 1.2830 42 1 1.4504 -2.7735 0.6616 43 1 3.9135 -1.5618 -0.7088 44 1 2.7183 -2.7068 -1.3889 45 1 1.4083 -0.1467 -5.0781 46 1 2.9477 0.3876 -4.7455 47 1 1.4417 -3.0091 -2.8367 48 1 0.5112 -2.1921 -4.1155 49 1 2.2391 -2.8253 -5.7774 50 1 3.1696 -3.6423 -4.4987 51 1 3.1246 -6.0795 -7.2583 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595958814.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:41 Heat of formation + Delta-G solvation = -44.868242 kcal Electronic energy + Delta-G solvation = -29046.284276 eV Core-core repulsion = 25329.599966 eV Total energy + Delta-G solvation = -3716.684310 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.85536 -40.21265 -38.81844 -36.83373 -34.94584 -34.53640 -32.60178 -31.93830 -31.81869 -31.25436 -28.22989 -27.85934 -26.59007 -25.60920 -23.62643 -23.26961 -22.41641 -22.17771 -21.11950 -19.56635 -18.45762 -18.04539 -17.48084 -17.30646 -16.88681 -16.50779 -16.30248 -16.07568 -15.93928 -15.59953 -15.13315 -14.89300 -14.57036 -14.39051 -14.27993 -14.07617 -13.91033 -13.86212 -13.68154 -13.44629 -13.40411 -13.19463 -12.91641 -12.81397 -12.52246 -12.50897 -12.27999 -12.04405 -11.98235 -11.82083 -11.69245 -11.67025 -11.55042 -11.46685 -11.21382 -10.93403 -10.49522 -9.87674 -9.77726 -9.61810 -9.41045 -8.14215 -6.24563 0.45538 0.52598 1.41139 1.42533 1.51430 1.53769 1.95244 2.44041 2.89951 3.18646 3.36518 3.58627 3.61342 3.80712 3.85714 3.95375 4.03593 4.08306 4.14349 4.19441 4.21971 4.29593 4.32270 4.36961 4.52350 4.59907 4.65749 4.66844 4.76781 4.81379 4.86128 4.87618 4.92875 4.97191 5.00751 5.12173 5.16667 5.21274 5.21524 5.23076 5.34721 5.52091 5.56027 5.61906 5.65910 5.76004 5.82532 5.97303 6.08115 6.14856 6.29547 6.46819 6.50319 6.93379 7.10099 7.43427 8.96984 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023010 B = 0.002546 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.588900 B =10996.981541 C =11359.609428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.165 3.835 3 C -0.077 4.077 4 C -0.080 4.080 5 C -0.118 4.118 6 C -0.121 4.121 7 C -0.129 4.129 8 C -0.128 4.128 9 C -0.130 4.130 10 C -0.112 4.112 11 C -0.125 4.125 12 C 0.083 3.917 13 N -0.606 5.606 14 C 0.503 3.497 15 O -0.575 6.575 16 C 0.089 3.911 17 H 0.103 0.897 18 N -0.818 5.818 19 C -0.078 4.078 20 C 0.043 3.957 21 C -0.542 4.542 22 H 0.054 0.946 23 C 0.002 3.998 24 N -0.929 5.929 25 Si 0.959 3.041 26 H -0.277 1.277 27 H -0.281 1.281 28 H -0.264 1.264 29 H 0.041 0.959 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.137 0.863 35 H 0.145 0.855 36 H 0.141 0.859 37 H 0.132 0.868 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.112 0.888 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.074 0.926 45 H 0.345 0.655 46 H 0.346 0.654 47 H 0.064 0.936 48 H 0.038 0.962 49 H 0.004 0.996 50 H -0.006 1.006 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.172 15.053 24.919 29.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.081 3.919 3 C -0.115 4.115 4 C -0.081 4.081 5 C -0.136 4.136 6 C -0.139 4.139 7 C -0.147 4.147 8 C -0.146 4.146 9 C -0.148 4.148 10 C -0.150 4.150 11 C -0.163 4.163 12 C -0.039 4.039 13 N -0.339 5.339 14 C 0.290 3.710 15 O -0.455 6.455 16 C -0.026 4.026 17 H 0.121 0.879 18 N -0.346 5.346 19 C -0.116 4.116 20 C 0.006 3.994 21 C -0.580 4.580 22 H 0.072 0.928 23 C -0.195 4.195 24 N -0.569 5.569 25 Si 0.784 3.216 26 H -0.203 1.203 27 H -0.206 1.206 28 H -0.188 1.188 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.155 0.845 35 H 0.162 0.838 36 H 0.159 0.841 37 H 0.150 0.850 38 H 0.125 0.875 39 H 0.113 0.887 40 H 0.107 0.893 41 H 0.130 0.870 42 H 0.089 0.911 43 H 0.106 0.894 44 H 0.092 0.908 45 H 0.158 0.842 46 H 0.159 0.841 47 H 0.082 0.918 48 H 0.057 0.943 49 H 0.023 0.977 50 H 0.012 0.988 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.208 14.828 24.206 28.387 hybrid contribution -0.986 0.038 -0.426 1.075 sum -0.778 14.866 23.780 28.055 Atomic orbital electron populations 1.22119 0.95059 1.01507 1.02074 1.21031 0.93834 0.91380 0.85650 1.20812 1.00547 0.94361 0.95828 1.19711 0.95228 0.98013 0.95098 1.21270 1.00310 0.99863 0.92177 1.21456 0.96479 0.96982 0.98948 1.21452 0.95313 0.99672 0.98287 1.21360 1.00598 0.99479 0.93144 1.21150 0.96307 0.98532 0.98840 1.22756 1.02607 0.94717 0.94885 1.22794 1.02728 0.96926 0.93878 1.22754 0.95434 0.88540 0.97173 1.48866 1.50127 1.30517 1.04392 1.21999 0.80167 0.84865 0.83946 1.90603 1.40116 1.30810 1.83961 1.21574 1.00931 0.93705 0.86438 0.87906 1.58991 1.16485 1.28139 1.31026 1.21355 0.97291 0.93109 0.99857 1.18794 0.94210 0.92575 0.93866 1.21689 1.09082 1.04904 1.22367 0.92799 1.25893 0.96310 1.01808 0.95538 1.70104 1.24389 1.36136 1.26278 0.85544 0.78530 0.78824 0.78714 1.20255 1.20607 1.18783 0.94032 0.93114 0.90474 0.92734 0.90516 0.84483 0.83761 0.84140 0.85010 0.87523 0.88676 0.89261 0.86980 0.91132 0.89370 0.90756 0.84189 0.84134 0.91779 0.94319 0.97728 0.98751 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 7.80 71.98 0.56 -3.15 16 2 C 0.17 3.64 0.58 3.95 0.00 3.64 16 3 C -0.08 -1.71 4.38 29.85 0.13 -1.58 16 4 C -0.08 -1.53 4.23 -19.86 -0.08 -1.61 16 5 C -0.12 -1.75 8.64 22.27 0.19 -1.55 16 6 C -0.12 -1.54 10.05 22.27 0.22 -1.31 16 7 C -0.13 -1.74 10.05 22.27 0.22 -1.51 16 8 C -0.13 -2.08 10.05 22.27 0.22 -1.86 16 9 C -0.13 -2.60 7.90 22.27 0.18 -2.43 16 10 C -0.11 -1.69 4.97 31.78 0.16 -1.53 16 11 C -0.13 -1.94 7.09 31.99 0.23 -1.71 16 12 C 0.08 1.73 6.42 86.79 0.56 2.29 16 13 N -0.61 -15.75 2.83 -764.47 -2.16 -17.91 16 14 C 0.50 16.37 6.66 87.66 0.58 16.95 16 15 O -0.57 -21.43 13.81 -3.00 -0.04 -21.48 16 16 C 0.09 3.12 2.43 44.17 0.11 3.22 16 17 H 0.10 3.41 7.69 -2.39 -0.02 3.39 16 18 N -0.82 -28.94 8.44 -171.81 -1.45 -30.39 16 19 C -0.08 -3.25 4.64 30.59 0.14 -3.10 16 20 C 0.04 2.25 4.86 29.85 0.15 2.40 16 21 C -0.54 -31.03 9.11 25.60 0.23 -30.80 16 22 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 23 C 0.00 0.14 5.46 84.65 0.46 0.60 16 24 N -0.93 -56.81 13.29 21.45 0.28 -56.52 16 25 Si 0.96 44.61 29.54 68.60 2.03 46.63 16 26 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 27 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 28 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 29 H 0.04 1.28 6.70 -2.39 -0.02 1.26 16 30 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.08 1.68 6.17 -2.39 -0.01 1.66 16 32 H 0.05 1.56 6.80 -2.38 -0.02 1.55 16 33 H 0.08 1.56 8.08 -2.39 -0.02 1.54 16 34 H 0.14 1.50 7.12 -2.91 -0.02 1.48 16 35 H 0.14 1.10 8.06 -2.91 -0.02 1.08 16 36 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 37 H 0.13 1.71 8.06 -2.91 -0.02 1.68 16 38 H 0.11 2.37 8.04 -2.91 -0.02 2.34 16 39 H 0.09 1.11 6.43 -2.39 -0.02 1.10 16 40 H 0.09 1.25 7.83 -2.39 -0.02 1.23 16 41 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 43 H 0.09 1.53 8.14 -2.38 -0.02 1.52 16 44 H 0.07 1.83 6.08 -2.39 -0.01 1.81 16 45 H 0.34 12.49 8.58 -89.69 -0.77 11.72 16 46 H 0.35 10.58 9.06 -89.70 -0.81 9.76 16 47 H 0.06 2.51 6.61 -2.39 -0.02 2.49 16 48 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 49 H 0.00 0.25 7.75 -2.39 -0.02 0.23 16 50 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 51 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -70.60 396.53 2.27 -68.33 By element: Atomic # 1 Polarization: 35.03 SS G_CDS: -0.65 Total: 34.38 kcal Atomic # 6 Polarization: -27.31 SS G_CDS: 4.27 Total: -23.05 kcal Atomic # 7 Polarization: -101.49 SS G_CDS: -3.33 Total: -104.82 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.04 Total: -21.48 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -70.60 2.27 -68.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595958814.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.462 kcal (2) G-P(sol) polarization free energy of solvation -70.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds