Wall clock time and date at job start Tue Mar 31 2020 15:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.87379 * 2 1 4 4 C 1.50697 * 109.47488 * 301.01948 * 3 2 1 5 5 C 1.38235 * 119.99605 * 269.72759 * 4 3 2 6 6 C 1.38234 * 120.00020 * 179.76516 * 5 4 3 7 7 C 1.38238 * 119.99839 * 0.50454 * 6 5 4 8 8 C 1.38233 * 119.99742 * 359.75135 * 7 6 5 9 9 C 1.38225 * 120.00503 * 89.99941 * 4 3 2 10 10 C 1.54329 * 110.00782 * 238.90506 * 2 1 3 11 11 C 1.55161 * 102.94151 * 262.70556 * 10 2 1 12 12 C 1.55137 * 101.48526 * 324.33461 * 11 10 2 13 13 N 1.47019 * 109.88013 * 121.02312 * 2 1 3 14 14 C 1.34777 * 125.64379 * 300.58613 * 13 2 1 15 15 O 1.21283 * 120.00463 * 0.02562 * 14 13 2 16 16 C 1.50700 * 119.99675 * 179.72980 * 14 13 2 17 17 H 1.08997 * 109.47478 * 40.27795 * 16 14 13 18 18 N 1.46905 * 109.47232 * 160.27974 * 16 14 13 19 19 C 1.53001 * 109.47277 * 280.27534 * 16 14 13 20 20 C 1.52996 * 109.47345 * 174.99661 * 19 16 14 21 21 C 1.50705 * 109.47087 * 179.97438 * 20 19 16 22 22 H 1.07992 * 120.00059 * 0.02562 * 21 20 19 23 23 C 1.37882 * 119.99891 * 180.02562 * 21 20 19 24 24 N 1.31509 * 119.99925 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99933 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46928 * 89.99684 * 25 23 21 27 27 H 1.48497 * 109.47130 * 209.99942 * 25 23 21 28 28 H 1.48499 * 109.47231 * 329.99928 * 25 23 21 29 29 H 1.09000 * 109.47158 * 298.98690 * 1 2 3 30 30 H 1.09003 * 109.46636 * 58.97998 * 1 2 3 31 31 H 1.08999 * 109.47398 * 178.97969 * 1 2 3 32 32 H 1.09003 * 109.46937 * 61.01670 * 3 2 1 33 33 H 1.08998 * 109.46965 * 181.01512 * 3 2 1 34 34 H 1.08000 * 120.00706 * 359.97438 * 5 4 3 35 35 H 1.08006 * 120.00627 * 180.22748 * 6 5 4 36 36 H 1.08001 * 120.00225 * 179.72022 * 7 6 5 37 37 H 1.08004 * 120.00014 * 179.97438 * 8 7 6 38 38 H 1.08004 * 119.99756 * 0.02562 * 9 4 3 39 39 H 1.09001 * 110.72149 * 21.06937 * 10 2 1 40 40 H 1.08998 * 110.71688 * 144.34247 * 10 2 1 41 41 H 1.08994 * 111.00643 * 82.57241 * 11 10 2 42 42 H 1.08997 * 111.00702 * 206.42748 * 11 10 2 43 43 H 1.09007 * 110.49426 * 278.45664 * 12 11 10 44 44 H 1.08993 * 110.34231 * 156.05913 * 12 11 10 45 45 H 1.00898 * 110.99843 * 59.99824 * 18 16 14 46 46 H 1.00899 * 110.99818 * 183.95616 * 18 16 14 47 47 H 1.09000 * 109.47456 * 295.00621 * 19 16 14 48 48 H 1.09003 * 109.46674 * 54.99990 * 19 16 14 49 49 H 1.08994 * 109.47734 * 300.00421 * 20 19 16 50 50 H 1.09008 * 109.46545 * 60.00669 * 20 19 16 51 51 H 0.96995 * 120.00318 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0502 1.4388 0.0000 4 6 1.5324 2.1602 -1.2176 5 6 2.2626 2.1470 -2.3913 6 6 1.7854 2.8046 -3.5096 7 6 0.5830 3.4843 -3.4512 8 6 -0.1445 3.5019 -2.2760 9 6 0.3302 2.8398 -1.1592 10 6 2.0581 -0.7489 -1.2418 11 6 2.3574 -2.1681 -0.6905 12 6 2.8643 -1.8434 0.7394 13 7 2.0300 -0.7126 1.1848 14 6 1.7730 -0.3829 2.4661 15 8 1.0738 0.5758 2.7172 16 6 2.3489 -1.2095 3.5868 17 1 3.3730 -1.4910 3.3416 18 7 2.3409 -0.4244 4.8285 19 6 1.5045 -2.4713 3.7759 20 6 2.1587 -3.3700 4.8272 21 6 1.3266 -4.6126 5.0139 22 1 0.4219 -4.7479 4.4398 23 6 1.7203 -5.5766 5.9176 24 7 2.8217 -5.4116 6.6170 25 14 0.6893 -7.1171 6.1485 26 1 1.1502 -8.1672 5.2050 27 1 0.8352 -7.6060 7.5430 28 1 -0.7372 -6.8028 5.8808 29 1 -0.3633 0.4980 0.8989 30 1 -0.3633 0.5296 -0.8807 31 1 -0.3634 -1.0275 -0.0183 32 1 1.7054 1.9498 0.8990 33 1 3.1400 1.4312 -0.0182 34 1 3.2043 1.6201 -2.4356 35 1 2.3540 2.7912 -4.4278 36 1 0.2123 4.0019 -4.3236 37 1 -1.0837 4.0332 -2.2302 38 1 -0.2380 2.8542 -0.2408 39 1 1.2961 -0.7904 -2.0201 40 1 2.9684 -0.2808 -1.6163 41 1 1.4520 -2.7741 -0.6594 42 1 3.1344 -2.6590 -1.2764 43 1 3.9148 -1.5535 0.7152 44 1 2.7218 -2.7017 1.3959 45 1 1.4021 -0.1512 5.0775 46 1 2.7810 -0.9330 5.5807 47 1 0.5042 -2.1928 4.1076 48 1 1.4372 -3.0085 2.8299 49 1 3.1589 -3.6485 4.4956 50 1 2.2260 -2.8328 5.7733 51 1 3.0989 -6.0899 7.2525 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595958815.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:45 Heat of formation + Delta-G solvation = -27.363198 kcal Electronic energy + Delta-G solvation = -29046.014262 eV Core-core repulsion = 25330.089028 eV Total energy + Delta-G solvation = -3715.925234 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.76030 -39.27814 -37.66102 -35.47516 -33.79565 -32.82778 -31.57091 -31.09822 -30.40628 -29.88460 -27.02191 -26.51411 -25.62954 -24.09180 -22.75367 -22.29872 -21.61637 -20.76242 -19.91946 -18.31988 -17.19308 -16.74430 -16.30531 -16.23709 -15.33552 -15.27184 -15.11073 -14.71696 -14.41882 -14.25793 -14.13198 -13.66134 -13.58565 -13.35073 -13.26351 -13.12198 -12.90368 -12.63937 -12.56740 -12.33516 -12.15679 -11.87396 -11.69627 -11.53398 -11.27394 -11.14828 -11.04591 -11.00398 -10.92162 -10.75159 -10.71634 -10.63479 -9.96895 -9.83633 -9.26923 -9.14160 -9.07399 -8.96139 -8.45184 -8.42056 -8.15949 -6.09398 -4.12479 1.17830 1.22689 2.96187 3.05256 3.25977 3.32985 3.36330 3.62224 4.34717 4.38942 4.48056 4.64129 4.72822 4.79556 4.83126 4.96187 5.02204 5.07451 5.10862 5.19398 5.22589 5.26880 5.34556 5.37410 5.55821 5.57031 5.61618 5.64468 5.72415 5.76703 5.77100 5.80909 5.85114 5.89658 5.93200 6.05458 6.12384 6.27763 6.29341 6.33066 6.34093 6.49596 6.53923 6.62067 6.83907 6.87468 7.46392 7.51934 7.61494 7.75054 7.87730 7.91978 8.30383 8.49495 8.93453 9.52418 11.01486 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023040 B = 0.002546 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.981046 B =10996.840049 C =11354.932301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.175 3.825 3 C -0.089 4.089 4 C -0.067 4.067 5 C -0.117 4.117 6 C -0.121 4.121 7 C -0.128 4.128 8 C -0.120 4.120 9 C -0.112 4.112 10 C -0.122 4.122 11 C -0.133 4.133 12 C 0.093 3.907 13 N -0.613 5.613 14 C 0.544 3.456 15 O -0.535 6.535 16 C 0.077 3.923 17 H 0.094 0.906 18 N -0.831 5.831 19 C -0.137 4.137 20 C 0.025 3.975 21 C -0.523 4.523 22 H 0.054 0.946 23 C 0.059 3.941 24 N -0.893 5.893 25 Si 0.892 3.108 26 H -0.280 1.280 27 H -0.286 1.286 28 H -0.274 1.274 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.123 0.877 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.068 0.932 44 H 0.088 0.912 45 H 0.345 0.655 46 H 0.354 0.646 47 H 0.054 0.946 48 H 0.056 0.944 49 H 0.018 0.982 50 H 0.017 0.983 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.420 13.681 -20.692 24.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.090 3.910 3 C -0.127 4.127 4 C -0.068 4.068 5 C -0.135 4.135 6 C -0.139 4.139 7 C -0.146 4.146 8 C -0.138 4.138 9 C -0.130 4.130 10 C -0.160 4.160 11 C -0.171 4.171 12 C -0.030 4.030 13 N -0.349 5.349 14 C 0.333 3.667 15 O -0.411 6.411 16 C -0.038 4.038 17 H 0.112 0.888 18 N -0.363 5.363 19 C -0.176 4.176 20 C -0.012 4.012 21 C -0.561 4.561 22 H 0.072 0.928 23 C -0.143 4.143 24 N -0.532 5.532 25 Si 0.720 3.280 26 H -0.206 1.206 27 H -0.211 1.211 28 H -0.199 1.199 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.141 0.859 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.086 0.914 44 H 0.107 0.893 45 H 0.158 0.842 46 H 0.169 0.831 47 H 0.072 0.928 48 H 0.075 0.925 49 H 0.036 0.964 50 H 0.036 0.964 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.252 14.662 -20.693 25.362 hybrid contribution -1.028 -1.801 0.519 2.138 sum -1.280 12.861 -20.174 23.959 Atomic orbital electron populations 1.22217 0.94148 1.02206 1.03060 1.20786 0.94418 0.90815 0.84954 1.20993 1.00488 0.94725 0.96473 1.19802 0.94760 0.97223 0.94998 1.21079 0.99926 0.99853 0.92666 1.21112 0.96423 0.98033 0.98316 1.21113 0.95501 1.00098 0.97932 1.21150 0.99883 0.99580 0.93212 1.21153 0.95875 0.97194 0.98750 1.22771 1.01635 0.95301 0.96302 1.22817 1.02130 0.96809 0.95314 1.22491 0.94610 0.89882 0.96038 1.48589 1.51152 1.30477 1.04644 1.20549 0.79842 0.84306 0.81960 1.90597 1.38427 1.28899 1.83129 1.21453 1.00587 0.92037 0.89678 0.88824 1.58746 1.26066 1.45910 1.05547 1.22381 0.98884 0.94626 1.01728 1.19095 0.95887 0.93492 0.92710 1.21171 1.08925 1.03585 1.22425 0.92766 1.25010 0.95156 0.98444 0.95692 1.69945 1.22899 1.34906 1.25425 0.86593 0.80706 0.83305 0.77418 1.20607 1.21145 1.19903 0.90922 0.91720 0.92611 0.89261 0.91029 0.86207 0.86314 0.86432 0.86255 0.85922 0.90200 0.90575 0.90427 0.89879 0.91352 0.89344 0.84178 0.83108 0.92766 0.92524 0.96397 0.96431 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 7.82 37.16 0.29 -1.68 16 2 C 0.17 2.06 0.58 -130.84 -0.08 1.98 16 3 C -0.09 -1.05 4.38 -27.89 -0.12 -1.17 16 4 C -0.07 -0.70 4.22 -104.63 -0.44 -1.14 16 5 C -0.12 -1.06 8.66 -39.58 -0.34 -1.40 16 6 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 7 C -0.13 -1.07 10.05 -39.58 -0.40 -1.46 16 8 C -0.12 -1.09 10.05 -39.59 -0.40 -1.48 16 9 C -0.11 -1.16 7.88 -39.59 -0.31 -1.47 16 10 C -0.12 -1.12 4.99 -24.89 -0.12 -1.25 16 11 C -0.13 -1.23 7.10 -24.46 -0.17 -1.40 16 12 C 0.09 1.07 6.40 -2.41 -0.02 1.06 16 13 N -0.61 -8.41 2.82 -155.67 -0.44 -8.85 16 14 C 0.54 9.16 6.67 -10.98 -0.07 9.09 16 15 O -0.53 -10.20 13.80 5.55 0.08 -10.12 16 16 C 0.08 1.35 2.48 -68.86 -0.17 1.17 16 17 H 0.09 1.57 7.67 -51.93 -0.40 1.17 16 18 N -0.83 -14.55 8.94 -5.65 -0.05 -14.60 16 19 C -0.14 -2.69 4.63 -26.73 -0.12 -2.82 16 20 C 0.03 0.61 4.74 -27.88 -0.13 0.48 16 21 C -0.52 -14.27 9.11 -34.44 -0.31 -14.58 16 22 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 23 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 24 N -0.89 -25.92 13.29 55.43 0.74 -25.18 16 25 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 29 H 0.07 1.08 6.69 -51.93 -0.35 0.73 16 30 H 0.06 0.72 6.14 -51.93 -0.32 0.40 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.09 1.29 6.78 -51.93 -0.35 0.94 16 33 H 0.07 0.82 8.07 -51.93 -0.42 0.40 16 34 H 0.12 0.92 7.15 -52.49 -0.38 0.54 16 35 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 36 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 37 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 38 H 0.12 1.29 8.04 -52.48 -0.42 0.87 16 39 H 0.08 0.70 7.83 -51.93 -0.41 0.29 16 40 H 0.08 0.62 6.48 -51.93 -0.34 0.28 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.71 8.14 -51.92 -0.42 0.28 16 44 H 0.09 1.13 6.05 -51.93 -0.31 0.82 16 45 H 0.35 6.11 8.58 -39.29 -0.34 5.77 16 46 H 0.35 6.20 7.55 -39.29 -0.30 5.90 16 47 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 48 H 0.06 1.08 6.60 -51.93 -0.34 0.74 16 49 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.02 0.44 6.87 -51.92 -0.36 0.09 16 51 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 394.56 15.07 5.95 5.95 Total: -1.00 -30.80 394.56 -10.54 -41.34 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -8.37 Total: 11.23 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -3.42 Total: -15.95 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: 0.25 Total: -48.63 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.08 Total: -10.12 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.80 -10.54 -41.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595958815.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.976 kcal (2) G-P(sol) polarization free energy of solvation -30.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds