Wall clock time and date at job start Tue Mar 31 2020 15:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.87379 * 2 1 4 4 C 1.50697 * 109.47488 * 301.01948 * 3 2 1 5 5 C 1.38235 * 119.99605 * 269.72759 * 4 3 2 6 6 C 1.38234 * 120.00020 * 179.76516 * 5 4 3 7 7 C 1.38238 * 119.99839 * 0.50454 * 6 5 4 8 8 C 1.38233 * 119.99742 * 359.75135 * 7 6 5 9 9 C 1.38225 * 120.00503 * 89.99941 * 4 3 2 10 10 C 1.54329 * 110.00782 * 238.90506 * 2 1 3 11 11 C 1.55161 * 102.94151 * 262.70556 * 10 2 1 12 12 C 1.55137 * 101.48526 * 324.33461 * 11 10 2 13 13 N 1.47019 * 109.88013 * 121.02312 * 2 1 3 14 14 C 1.34777 * 125.64379 * 300.58613 * 13 2 1 15 15 O 1.21283 * 120.00463 * 0.02562 * 14 13 2 16 16 C 1.50700 * 119.99675 * 179.72980 * 14 13 2 17 17 H 1.08997 * 109.47478 * 40.27795 * 16 14 13 18 18 N 1.46905 * 109.47232 * 160.27974 * 16 14 13 19 19 C 1.53001 * 109.47277 * 280.27534 * 16 14 13 20 20 C 1.52996 * 109.47345 * 174.99661 * 19 16 14 21 21 C 1.50705 * 109.47087 * 179.97438 * 20 19 16 22 22 H 1.07992 * 120.00059 * 0.02562 * 21 20 19 23 23 C 1.37882 * 119.99891 * 180.02562 * 21 20 19 24 24 N 1.31509 * 119.99925 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99933 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46928 * 89.99684 * 25 23 21 27 27 H 1.48497 * 109.47130 * 209.99942 * 25 23 21 28 28 H 1.48499 * 109.47231 * 329.99928 * 25 23 21 29 29 H 1.09000 * 109.47158 * 298.98690 * 1 2 3 30 30 H 1.09003 * 109.46636 * 58.97998 * 1 2 3 31 31 H 1.08999 * 109.47398 * 178.97969 * 1 2 3 32 32 H 1.09003 * 109.46937 * 61.01670 * 3 2 1 33 33 H 1.08998 * 109.46965 * 181.01512 * 3 2 1 34 34 H 1.08000 * 120.00706 * 359.97438 * 5 4 3 35 35 H 1.08006 * 120.00627 * 180.22748 * 6 5 4 36 36 H 1.08001 * 120.00225 * 179.72022 * 7 6 5 37 37 H 1.08004 * 120.00014 * 179.97438 * 8 7 6 38 38 H 1.08004 * 119.99756 * 0.02562 * 9 4 3 39 39 H 1.09001 * 110.72149 * 21.06937 * 10 2 1 40 40 H 1.08998 * 110.71688 * 144.34247 * 10 2 1 41 41 H 1.08994 * 111.00643 * 82.57241 * 11 10 2 42 42 H 1.08997 * 111.00702 * 206.42748 * 11 10 2 43 43 H 1.09007 * 110.49426 * 278.45664 * 12 11 10 44 44 H 1.08993 * 110.34231 * 156.05913 * 12 11 10 45 45 H 1.00898 * 110.99843 * 59.99824 * 18 16 14 46 46 H 1.00899 * 110.99818 * 183.95616 * 18 16 14 47 47 H 1.09000 * 109.47456 * 295.00621 * 19 16 14 48 48 H 1.09003 * 109.46674 * 54.99990 * 19 16 14 49 49 H 1.08994 * 109.47734 * 300.00421 * 20 19 16 50 50 H 1.09008 * 109.46545 * 60.00669 * 20 19 16 51 51 H 0.96995 * 120.00318 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0502 1.4388 0.0000 4 6 1.5324 2.1602 -1.2176 5 6 2.2626 2.1470 -2.3913 6 6 1.7854 2.8046 -3.5096 7 6 0.5830 3.4843 -3.4512 8 6 -0.1445 3.5019 -2.2760 9 6 0.3302 2.8398 -1.1592 10 6 2.0581 -0.7489 -1.2418 11 6 2.3574 -2.1681 -0.6905 12 6 2.8643 -1.8434 0.7394 13 7 2.0300 -0.7126 1.1848 14 6 1.7730 -0.3829 2.4661 15 8 1.0738 0.5758 2.7172 16 6 2.3489 -1.2095 3.5868 17 1 3.3730 -1.4910 3.3416 18 7 2.3409 -0.4244 4.8285 19 6 1.5045 -2.4713 3.7759 20 6 2.1587 -3.3700 4.8272 21 6 1.3266 -4.6126 5.0139 22 1 0.4219 -4.7479 4.4398 23 6 1.7203 -5.5766 5.9176 24 7 2.8217 -5.4116 6.6170 25 14 0.6893 -7.1171 6.1485 26 1 1.1502 -8.1672 5.2050 27 1 0.8352 -7.6060 7.5430 28 1 -0.7372 -6.8028 5.8808 29 1 -0.3633 0.4980 0.8989 30 1 -0.3633 0.5296 -0.8807 31 1 -0.3634 -1.0275 -0.0183 32 1 1.7054 1.9498 0.8990 33 1 3.1400 1.4312 -0.0182 34 1 3.2043 1.6201 -2.4356 35 1 2.3540 2.7912 -4.4278 36 1 0.2123 4.0019 -4.3236 37 1 -1.0837 4.0332 -2.2302 38 1 -0.2380 2.8542 -0.2408 39 1 1.2961 -0.7904 -2.0201 40 1 2.9684 -0.2808 -1.6163 41 1 1.4520 -2.7741 -0.6594 42 1 3.1344 -2.6590 -1.2764 43 1 3.9148 -1.5535 0.7152 44 1 2.7218 -2.7017 1.3959 45 1 1.4021 -0.1512 5.0775 46 1 2.7810 -0.9330 5.5807 47 1 0.5042 -2.1928 4.1076 48 1 1.4372 -3.0085 2.8299 49 1 3.1589 -3.6485 4.4956 50 1 2.2260 -2.8328 5.7733 51 1 3.0989 -6.0899 7.2525 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595958815.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:44 Heat of formation + Delta-G solvation = -44.543864 kcal Electronic energy + Delta-G solvation = -29046.759272 eV Core-core repulsion = 25330.089028 eV Total energy + Delta-G solvation = -3716.670244 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.81128 -40.16439 -38.76631 -37.06321 -34.96357 -34.55554 -32.56079 -31.80054 -31.71160 -31.23661 -28.26065 -27.83943 -26.57242 -25.76638 -23.63645 -23.26227 -22.41062 -22.21909 -21.10887 -19.58386 -18.60606 -18.08117 -17.46821 -17.26280 -16.58040 -16.39987 -16.07702 -15.92955 -15.87569 -15.56977 -15.39044 -14.79467 -14.73606 -14.41875 -14.29281 -14.14495 -14.01287 -13.84783 -13.67413 -13.47726 -13.37071 -13.18277 -12.92963 -12.86456 -12.66979 -12.55145 -12.43453 -12.06323 -11.95576 -11.80100 -11.77534 -11.70436 -11.54842 -11.47917 -11.31738 -10.60597 -10.56334 -9.84986 -9.75455 -9.66922 -9.37447 -8.22466 -6.32959 0.47910 0.54871 1.38449 1.39459 1.49935 1.62124 1.92848 2.38897 2.92087 3.11003 3.38486 3.62179 3.71605 3.81455 3.87159 3.97858 4.05693 4.08816 4.16465 4.21306 4.22191 4.24689 4.34153 4.38907 4.54291 4.59656 4.62951 4.69143 4.76572 4.80371 4.83663 4.85198 4.93752 4.99503 5.01319 5.06566 5.13710 5.19300 5.23969 5.24548 5.36804 5.44633 5.55289 5.62638 5.64598 5.67916 5.78806 5.78996 6.04963 6.17117 6.19627 6.44370 6.53303 6.81809 7.20108 7.36086 8.88317 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023040 B = 0.002546 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.981046 B =10996.840049 C =11354.932301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.169 3.831 3 C -0.079 4.079 4 C -0.079 4.079 5 C -0.118 4.118 6 C -0.121 4.121 7 C -0.130 4.130 8 C -0.128 4.128 9 C -0.130 4.130 10 C -0.112 4.112 11 C -0.124 4.124 12 C 0.083 3.917 13 N -0.610 5.610 14 C 0.540 3.460 15 O -0.564 6.564 16 C 0.084 3.916 17 H 0.102 0.898 18 N -0.829 5.829 19 C -0.117 4.117 20 C 0.033 3.967 21 C -0.544 4.544 22 H 0.053 0.947 23 C 0.006 3.994 24 N -0.926 5.926 25 Si 0.959 3.041 26 H -0.270 1.270 27 H -0.282 1.282 28 H -0.269 1.269 29 H 0.041 0.959 30 H 0.077 0.923 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.137 0.863 35 H 0.145 0.855 36 H 0.141 0.859 37 H 0.132 0.868 38 H 0.107 0.893 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.071 0.929 42 H 0.111 0.889 43 H 0.086 0.914 44 H 0.073 0.927 45 H 0.343 0.657 46 H 0.352 0.648 47 H 0.040 0.960 48 H 0.063 0.937 49 H 0.002 0.998 50 H 0.001 0.999 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.054 13.221 -23.794 27.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.085 3.915 3 C -0.117 4.117 4 C -0.080 4.080 5 C -0.136 4.136 6 C -0.139 4.139 7 C -0.147 4.147 8 C -0.146 4.146 9 C -0.148 4.148 10 C -0.149 4.149 11 C -0.162 4.162 12 C -0.039 4.039 13 N -0.344 5.344 14 C 0.329 3.671 15 O -0.443 6.443 16 C -0.031 4.031 17 H 0.120 0.880 18 N -0.361 5.361 19 C -0.157 4.157 20 C -0.004 4.004 21 C -0.582 4.582 22 H 0.071 0.929 23 C -0.192 4.192 24 N -0.566 5.566 25 Si 0.784 3.216 26 H -0.195 1.195 27 H -0.208 1.208 28 H -0.194 1.194 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.155 0.845 35 H 0.163 0.837 36 H 0.159 0.841 37 H 0.150 0.850 38 H 0.125 0.875 39 H 0.109 0.891 40 H 0.113 0.887 41 H 0.090 0.910 42 H 0.130 0.870 43 H 0.104 0.896 44 H 0.092 0.908 45 H 0.156 0.844 46 H 0.167 0.833 47 H 0.059 0.941 48 H 0.082 0.918 49 H 0.020 0.980 50 H 0.019 0.981 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.121 14.194 -23.832 27.739 hybrid contribution -1.135 -1.600 1.454 2.442 sum -1.013 12.595 -22.378 25.699 Atomic orbital electron populations 1.22126 0.94953 1.01582 1.02150 1.21012 0.93881 0.91261 0.85361 1.20826 1.00510 0.94493 0.95898 1.19705 0.95209 0.98001 0.95057 1.21265 1.00285 0.99916 0.92163 1.21453 0.96420 0.97030 0.98946 1.21451 0.95383 0.99680 0.98221 1.21357 1.00634 0.99433 0.93133 1.21153 0.96320 0.98461 0.98897 1.22758 1.02624 0.94700 0.94867 1.22826 1.02707 0.96909 0.93777 1.22737 0.95342 0.88551 0.97281 1.48634 1.50590 1.30931 1.04195 1.20344 0.79779 0.84000 0.82951 1.90589 1.39730 1.30113 1.83819 1.21363 1.00510 0.91062 0.90137 0.88009 1.58758 1.25909 1.45743 1.05656 1.22103 0.98015 0.95064 1.00505 1.18938 0.95010 0.93285 0.93151 1.21576 1.09232 1.04840 1.22518 0.92880 1.25858 0.96304 1.01701 0.95380 1.70055 1.24397 1.36083 1.26029 0.85544 0.79129 0.79448 0.77522 1.19521 1.20773 1.19374 0.93999 0.90382 0.92983 0.92786 0.90614 0.84505 0.83748 0.84124 0.84990 0.87510 0.89109 0.88703 0.91023 0.87023 0.89583 0.90846 0.84378 0.83292 0.94118 0.91799 0.97962 0.98068 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.81 7.82 71.98 0.56 -3.24 16 2 C 0.17 3.88 0.58 3.96 0.00 3.88 16 3 C -0.08 -1.86 4.38 29.85 0.13 -1.73 16 4 C -0.08 -1.58 4.22 -19.87 -0.08 -1.67 16 5 C -0.12 -1.83 8.66 22.27 0.19 -1.64 16 6 C -0.12 -1.60 10.05 22.27 0.22 -1.37 16 7 C -0.13 -1.80 10.05 22.27 0.22 -1.57 16 8 C -0.13 -2.15 10.05 22.27 0.22 -1.93 16 9 C -0.13 -2.71 7.88 22.27 0.18 -2.53 16 10 C -0.11 -1.75 4.99 31.79 0.16 -1.59 16 11 C -0.12 -1.97 7.10 32.07 0.23 -1.74 16 12 C 0.08 1.80 6.40 86.94 0.56 2.35 16 13 N -0.61 -16.62 2.82 -764.80 -2.16 -18.78 16 14 C 0.54 18.68 6.67 87.66 0.58 19.27 16 15 O -0.56 -22.56 13.80 -3.04 -0.04 -22.60 16 16 C 0.08 3.00 2.48 44.17 0.11 3.11 16 17 H 0.10 3.44 7.67 -2.39 -0.02 3.42 16 18 N -0.83 -30.06 8.94 -171.79 -1.54 -31.59 16 19 C -0.12 -4.73 4.63 30.59 0.14 -4.59 16 20 C 0.03 1.65 4.74 29.85 0.14 1.80 16 21 C -0.54 -30.03 9.11 25.60 0.23 -29.80 16 22 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 23 C 0.01 0.34 5.46 84.66 0.46 0.81 16 24 N -0.93 -54.34 13.29 21.45 0.28 -54.05 16 25 Si 0.96 43.44 29.54 68.60 2.03 45.46 16 26 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 27 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 28 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 29 H 0.04 1.31 6.69 -2.39 -0.02 1.30 16 30 H 0.08 1.73 6.14 -2.39 -0.01 1.72 16 31 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.05 1.66 6.78 -2.39 -0.02 1.64 16 33 H 0.08 1.67 8.07 -2.39 -0.02 1.65 16 34 H 0.14 1.59 7.15 -2.91 -0.02 1.57 16 35 H 0.14 1.16 8.06 -2.91 -0.02 1.14 16 36 H 0.14 1.27 8.06 -2.91 -0.02 1.24 16 37 H 0.13 1.77 8.06 -2.91 -0.02 1.75 16 38 H 0.11 2.46 8.04 -2.91 -0.02 2.44 16 39 H 0.09 1.29 7.83 -2.39 -0.02 1.27 16 40 H 0.09 1.17 6.48 -2.39 -0.02 1.16 16 41 H 0.07 1.24 8.14 -2.39 -0.02 1.23 16 42 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 44 H 0.07 1.83 6.05 -2.39 -0.01 1.81 16 45 H 0.34 12.69 8.58 -89.70 -0.77 11.92 16 46 H 0.35 12.83 7.55 -89.69 -0.68 12.15 16 47 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 48 H 0.06 2.47 6.60 -2.39 -0.02 2.45 16 49 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 50 H 0.00 0.05 6.87 -2.38 -0.02 0.04 16 51 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -67.66 394.56 2.33 -65.33 By element: Atomic # 1 Polarization: 38.93 SS G_CDS: -0.52 Total: 38.42 kcal Atomic # 6 Polarization: -26.46 SS G_CDS: 4.27 Total: -22.19 kcal Atomic # 7 Polarization: -101.01 SS G_CDS: -3.41 Total: -104.42 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.04 Total: -22.60 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -67.66 2.33 -65.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595958815.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.783 kcal (2) G-P(sol) polarization free energy of solvation -67.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds