Wall clock time and date at job start Tue Mar 31 2020 15:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.87614 * 2 1 4 4 C 1.50701 * 109.47174 * 301.02006 * 3 2 1 5 5 C 1.38235 * 119.99808 * 89.99739 * 4 3 2 6 6 C 1.38243 * 119.99602 * 179.97438 * 5 4 3 7 7 C 1.38232 * 120.00069 * 0.09581 * 6 5 4 8 8 C 1.38234 * 119.99866 * 359.86117 * 7 6 5 9 9 C 1.38230 * 119.99865 * 269.97485 * 4 3 2 10 10 C 1.54332 * 110.00599 * 238.90645 * 2 1 3 11 11 C 1.55159 * 102.93812 * 262.70153 * 10 2 1 12 12 C 1.54914 * 101.58384 * 324.49963 * 11 10 2 13 13 N 1.47016 * 109.88474 * 121.02130 * 2 1 3 14 14 C 1.34775 * 125.64632 * 300.66940 * 13 2 1 15 15 O 1.21274 * 119.99987 * 359.97438 * 14 13 2 16 16 C 1.50704 * 120.00207 * 180.02562 * 14 13 2 17 17 H 1.09007 * 109.46558 * 319.99650 * 16 14 13 18 18 N 1.46897 * 109.47486 * 199.99575 * 16 14 13 19 19 C 1.52997 * 109.47243 * 79.99301 * 16 14 13 20 20 C 1.53004 * 109.47366 * 185.00465 * 19 16 14 21 21 C 1.50697 * 109.47181 * 180.02562 * 20 19 16 22 22 H 1.07998 * 120.00321 * 0.02562 * 21 20 19 23 23 C 1.37873 * 119.99757 * 179.97438 * 21 20 19 24 24 N 1.31511 * 120.00366 * 180.02562 * 23 21 20 25 25 Si 1.86805 * 120.00299 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.46780 * 89.99497 * 25 23 21 27 27 H 1.48496 * 109.47554 * 209.99868 * 25 23 21 28 28 H 1.48503 * 109.46660 * 330.00229 * 25 23 21 29 29 H 1.08999 * 109.46821 * 59.29539 * 1 2 3 30 30 H 1.08998 * 109.47038 * 179.29739 * 1 2 3 31 31 H 1.08996 * 109.46979 * 299.29490 * 1 2 3 32 32 H 1.08993 * 109.47576 * 181.01427 * 3 2 1 33 33 H 1.09001 * 109.46567 * 61.01381 * 3 2 1 34 34 H 1.08000 * 120.00616 * 359.70324 * 5 4 3 35 35 H 1.08001 * 119.99556 * 179.97438 * 6 5 4 36 36 H 1.07997 * 119.99666 * 179.97438 * 7 6 5 37 37 H 1.08000 * 119.99729 * 180.02562 * 8 7 6 38 38 H 1.08001 * 120.00371 * 0.02562 * 9 4 3 39 39 H 1.08994 * 110.72254 * 21.06356 * 10 2 1 40 40 H 1.08996 * 110.71594 * 144.34290 * 10 2 1 41 41 H 1.09001 * 111.00045 * 206.42716 * 11 10 2 42 42 H 1.09001 * 111.00709 * 82.57825 * 11 10 2 43 43 H 1.08998 * 110.36668 * 278.16932 * 12 11 10 44 44 H 1.08994 * 110.36363 * 155.84734 * 12 11 10 45 45 H 1.00902 * 111.00045 * 176.03872 * 18 16 14 46 46 H 1.00898 * 110.99778 * 299.99874 * 18 16 14 47 47 H 1.09003 * 109.47469 * 305.00258 * 19 16 14 48 48 H 1.08996 * 109.47374 * 65.00449 * 19 16 14 49 49 H 1.09003 * 109.46657 * 300.00290 * 20 19 16 50 50 H 1.08996 * 109.46887 * 59.99685 * 20 19 16 51 51 H 0.97002 * 120.00846 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0502 1.4388 0.0000 4 6 1.5324 2.1602 -1.2176 5 6 0.3301 2.8398 -1.1591 6 6 -0.1446 3.5020 -2.2759 7 6 0.5821 3.4828 -3.4517 8 6 1.7848 2.8039 -3.5098 9 6 2.2600 2.1427 -2.3928 10 6 2.0580 -0.7489 -1.2418 11 6 2.3574 -2.1680 -0.6905 12 6 2.8599 -1.8466 0.7392 13 7 2.0301 -0.7125 1.1848 14 6 1.7719 -0.3838 2.4661 15 8 1.0722 0.5745 2.7171 16 6 2.3536 -1.2062 3.5869 17 1 2.3091 -2.2629 3.3230 18 7 1.5817 -0.9755 4.8153 19 6 3.8103 -0.7986 3.8158 20 6 4.4379 -1.7167 4.8667 21 6 5.8726 -1.3147 5.0926 22 1 6.2945 -0.4869 4.5421 23 6 6.6462 -2.0031 6.0028 24 7 7.8981 -1.6520 6.2004 25 14 5.9162 -3.4345 6.9556 26 1 6.1288 -4.6935 6.1974 27 1 6.5788 -3.5366 8.2806 28 1 4.4604 -3.2112 7.1460 29 1 -0.3633 0.5247 -0.8836 30 1 -0.3633 -1.0276 -0.0126 31 1 -0.3633 0.5028 0.8962 32 1 3.1400 1.4313 -0.0182 33 1 1.7053 1.9498 0.8990 34 1 -0.2406 2.8498 -0.2422 35 1 -1.0842 4.0326 -2.2303 36 1 0.2110 3.9998 -4.3243 37 1 2.3527 2.7893 -4.4283 38 1 3.1994 1.6117 -2.4385 39 1 1.2961 -0.7904 -2.0201 40 1 2.9683 -0.2808 -1.6163 41 1 3.1344 -2.6589 -1.2765 42 1 1.4520 -2.7742 -0.6594 43 1 3.9116 -1.5613 0.7165 44 1 2.7128 -2.7049 1.3948 45 1 1.9115 -1.5641 5.5655 46 1 1.6074 -0.0024 5.0810 47 1 4.3633 -0.8857 2.8806 48 1 3.8483 0.2331 4.1656 49 1 3.8849 -1.6295 5.8020 50 1 4.3999 -2.7483 4.5170 51 1 8.4425 -2.1365 6.8405 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595958817.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:48 Heat of formation + Delta-G solvation = -23.598294 kcal Electronic energy + Delta-G solvation = -29138.978759 eV Core-core repulsion = 25423.216783 eV Total energy + Delta-G solvation = -3715.761976 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.80726 -39.29490 -37.73813 -35.60143 -33.83389 -32.78799 -31.63491 -31.09475 -30.43876 -30.31493 -27.04979 -26.82724 -25.67954 -24.09008 -22.74604 -22.26026 -21.62559 -20.59004 -20.02946 -18.38864 -17.25956 -16.77671 -16.68121 -16.26459 -15.50532 -15.29209 -15.12231 -14.64686 -14.40717 -14.23999 -14.22130 -13.68410 -13.59908 -13.40286 -13.36490 -13.23860 -12.91877 -12.70328 -12.65780 -12.48832 -12.32533 -12.01233 -11.85512 -11.59172 -11.42311 -11.22902 -11.14655 -11.04489 -10.96939 -10.77960 -10.70755 -10.29881 -10.06329 -9.89480 -9.32223 -9.29435 -9.06643 -8.97593 -8.63027 -8.46888 -8.29141 -6.12496 -4.12005 1.18692 1.23652 2.89461 2.98632 3.23877 3.32551 3.33811 3.62789 4.30318 4.36750 4.42131 4.63498 4.72940 4.75686 4.83758 4.92291 4.96626 5.04111 5.06251 5.08364 5.17239 5.20629 5.34626 5.36275 5.41008 5.51668 5.57816 5.61762 5.63160 5.70509 5.74579 5.76779 5.80270 5.86172 5.92908 6.00841 6.09612 6.16304 6.25391 6.29910 6.32788 6.34602 6.50555 6.57473 6.65292 6.84816 7.08913 7.20878 7.35579 7.65233 7.68083 7.78445 8.41852 8.44261 8.91517 9.48801 11.00717 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019010 B = 0.002732 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.574303 B =10247.554922 C =10442.151585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.175 3.825 3 C -0.090 4.090 4 C -0.067 4.067 5 C -0.112 4.112 6 C -0.121 4.121 7 C -0.128 4.128 8 C -0.120 4.120 9 C -0.117 4.117 10 C -0.122 4.122 11 C -0.133 4.133 12 C 0.096 3.904 13 N -0.613 5.613 14 C 0.544 3.456 15 O -0.533 6.533 16 C 0.074 3.926 17 H 0.094 0.906 18 N -0.831 5.831 19 C -0.128 4.128 20 C -0.009 4.009 21 C -0.523 4.523 22 H 0.071 0.929 23 C 0.067 3.933 24 N -0.901 5.901 25 Si 0.881 3.119 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.265 1.265 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.350 0.650 46 H 0.348 0.652 47 H 0.062 0.938 48 H 0.060 0.940 49 H 0.015 0.985 50 H 0.013 0.987 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.876 3.283 -20.079 25.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.091 3.909 3 C -0.128 4.128 4 C -0.068 4.068 5 C -0.130 4.130 6 C -0.139 4.139 7 C -0.146 4.146 8 C -0.138 4.138 9 C -0.135 4.135 10 C -0.160 4.160 11 C -0.171 4.171 12 C -0.027 4.027 13 N -0.348 5.348 14 C 0.334 3.666 15 O -0.409 6.409 16 C -0.041 4.041 17 H 0.112 0.888 18 N -0.363 5.363 19 C -0.168 4.168 20 C -0.047 4.047 21 C -0.561 4.561 22 H 0.089 0.911 23 C -0.134 4.134 24 N -0.539 5.539 25 Si 0.708 3.292 26 H -0.203 1.203 27 H -0.213 1.213 28 H -0.190 1.190 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.098 0.902 45 H 0.165 0.835 46 H 0.161 0.839 47 H 0.080 0.920 48 H 0.079 0.921 49 H 0.034 0.966 50 H 0.031 0.969 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.746 3.517 -20.134 25.801 hybrid contribution 0.874 -0.508 0.924 1.370 sum -14.872 3.009 -19.210 24.480 Atomic orbital electron populations 1.22206 0.94132 1.02019 1.03137 1.20792 0.94344 0.90945 0.84859 1.21004 1.00761 0.94598 0.96479 1.19797 0.94763 0.97279 0.94949 1.21148 0.95873 0.97274 0.98720 1.21145 0.99911 0.99611 0.93203 1.21112 0.95494 1.00103 0.97929 1.21118 0.96386 0.97970 0.98373 1.21099 0.99946 0.99774 0.92646 1.22773 1.01788 0.95185 0.96278 1.22790 1.01934 0.96937 0.95463 1.22406 0.95376 0.89366 0.95533 1.48583 1.51126 1.30422 1.04667 1.20425 0.79482 0.84806 0.81929 1.90605 1.38215 1.28953 1.83090 1.21503 0.93250 0.99345 0.89982 0.88786 1.58738 1.58726 1.12653 1.06163 1.22173 0.92156 1.01078 1.01360 1.19564 0.96960 0.94509 0.93658 1.21056 0.94056 1.17375 1.23577 0.91096 1.25040 0.94682 0.97207 0.96503 1.69907 1.07220 1.41181 1.35631 0.86769 0.79876 0.82976 0.79582 1.20262 1.21338 1.18977 0.91676 0.92793 0.90865 0.90786 0.89310 0.85957 0.86276 0.86430 0.86279 0.86122 0.90169 0.90384 0.89761 0.90700 0.90680 0.90208 0.83525 0.83882 0.91953 0.92142 0.96649 0.96878 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 7.80 37.16 0.29 -1.54 16 2 C 0.18 2.00 0.58 -130.84 -0.08 1.92 16 3 C -0.09 -1.09 4.38 -27.88 -0.12 -1.21 16 4 C -0.07 -0.71 4.23 -104.63 -0.44 -1.16 16 5 C -0.11 -1.16 7.89 -39.58 -0.31 -1.47 16 6 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 7 C -0.13 -1.08 10.05 -39.58 -0.40 -1.48 16 8 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 9 C -0.12 -1.10 8.66 -39.59 -0.34 -1.44 16 10 C -0.12 -1.08 4.98 -24.89 -0.12 -1.21 16 11 C -0.13 -1.12 7.08 -24.58 -0.17 -1.29 16 12 C 0.10 1.05 6.24 -2.53 -0.02 1.04 16 13 N -0.61 -8.06 2.82 -155.81 -0.44 -8.50 16 14 C 0.54 8.79 6.67 -10.98 -0.07 8.72 16 15 O -0.53 -9.84 13.81 5.56 0.08 -9.76 16 16 C 0.07 1.21 2.62 -68.87 -0.18 1.03 16 17 H 0.09 1.44 6.91 -51.93 -0.36 1.08 16 18 N -0.83 -13.60 8.94 -5.65 -0.05 -13.65 16 19 C -0.13 -2.42 4.77 -26.73 -0.13 -2.54 16 20 C -0.01 -0.21 3.81 -27.88 -0.11 -0.32 16 21 C -0.52 -14.42 9.66 -34.44 -0.33 -14.75 16 22 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 23 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 24 N -0.90 -27.29 13.96 55.43 0.77 -26.52 16 25 Si 0.88 21.03 27.47 -169.99 -4.67 16.36 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 29 H 0.06 0.68 6.16 -51.93 -0.32 0.36 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 1.03 6.70 -51.93 -0.35 0.68 16 32 H 0.07 0.90 8.07 -51.93 -0.42 0.49 16 33 H 0.09 1.29 6.79 -51.93 -0.35 0.94 16 34 H 0.12 1.28 8.03 -52.49 -0.42 0.85 16 35 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 36 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 38 H 0.12 0.99 7.13 -52.49 -0.37 0.61 16 39 H 0.08 0.66 7.83 -51.93 -0.41 0.25 16 40 H 0.08 0.65 6.46 -51.93 -0.34 0.31 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.84 7.87 -51.93 -0.41 0.43 16 44 H 0.08 0.85 6.92 -51.93 -0.36 0.49 16 45 H 0.35 5.57 7.55 -39.29 -0.30 5.27 16 46 H 0.35 5.79 8.58 -39.29 -0.34 5.45 16 47 H 0.06 1.15 7.41 -51.93 -0.38 0.77 16 48 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 49 H 0.02 0.34 5.93 -51.93 -0.31 0.03 16 50 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 51 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 391.68 15.07 5.90 5.90 Total: -1.00 -31.72 391.68 -10.21 -41.92 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -8.37 Total: 11.05 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -3.43 Total: -16.80 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: 0.28 Total: -48.67 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.08 Total: -9.76 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.67 Total: 16.36 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.72 -10.21 -41.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595958817.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.326 kcal (2) G-P(sol) polarization free energy of solvation -31.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds