Wall clock time and date at job start Tue Mar 31 2020 15:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.87614 * 2 1 4 4 C 1.50701 * 109.47174 * 301.02006 * 3 2 1 5 5 C 1.38235 * 119.99808 * 89.99739 * 4 3 2 6 6 C 1.38243 * 119.99602 * 179.97438 * 5 4 3 7 7 C 1.38232 * 120.00069 * 0.09581 * 6 5 4 8 8 C 1.38234 * 119.99866 * 359.86117 * 7 6 5 9 9 C 1.38230 * 119.99865 * 269.97485 * 4 3 2 10 10 C 1.54332 * 110.00599 * 238.90645 * 2 1 3 11 11 C 1.55159 * 102.93812 * 262.70153 * 10 2 1 12 12 C 1.54914 * 101.58384 * 324.49963 * 11 10 2 13 13 N 1.47016 * 109.88474 * 121.02130 * 2 1 3 14 14 C 1.34775 * 125.64632 * 300.66940 * 13 2 1 15 15 O 1.21274 * 119.99987 * 359.97438 * 14 13 2 16 16 C 1.50704 * 120.00207 * 180.02562 * 14 13 2 17 17 H 1.09007 * 109.46558 * 319.99650 * 16 14 13 18 18 N 1.46897 * 109.47486 * 199.99575 * 16 14 13 19 19 C 1.52997 * 109.47243 * 79.99301 * 16 14 13 20 20 C 1.53004 * 109.47366 * 185.00465 * 19 16 14 21 21 C 1.50697 * 109.47181 * 180.02562 * 20 19 16 22 22 H 1.07998 * 120.00321 * 0.02562 * 21 20 19 23 23 C 1.37873 * 119.99757 * 179.97438 * 21 20 19 24 24 N 1.31511 * 120.00366 * 180.02562 * 23 21 20 25 25 Si 1.86805 * 120.00299 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.46780 * 89.99497 * 25 23 21 27 27 H 1.48496 * 109.47554 * 209.99868 * 25 23 21 28 28 H 1.48503 * 109.46660 * 330.00229 * 25 23 21 29 29 H 1.08999 * 109.46821 * 59.29539 * 1 2 3 30 30 H 1.08998 * 109.47038 * 179.29739 * 1 2 3 31 31 H 1.08996 * 109.46979 * 299.29490 * 1 2 3 32 32 H 1.08993 * 109.47576 * 181.01427 * 3 2 1 33 33 H 1.09001 * 109.46567 * 61.01381 * 3 2 1 34 34 H 1.08000 * 120.00616 * 359.70324 * 5 4 3 35 35 H 1.08001 * 119.99556 * 179.97438 * 6 5 4 36 36 H 1.07997 * 119.99666 * 179.97438 * 7 6 5 37 37 H 1.08000 * 119.99729 * 180.02562 * 8 7 6 38 38 H 1.08001 * 120.00371 * 0.02562 * 9 4 3 39 39 H 1.08994 * 110.72254 * 21.06356 * 10 2 1 40 40 H 1.08996 * 110.71594 * 144.34290 * 10 2 1 41 41 H 1.09001 * 111.00045 * 206.42716 * 11 10 2 42 42 H 1.09001 * 111.00709 * 82.57825 * 11 10 2 43 43 H 1.08998 * 110.36668 * 278.16932 * 12 11 10 44 44 H 1.08994 * 110.36363 * 155.84734 * 12 11 10 45 45 H 1.00902 * 111.00045 * 176.03872 * 18 16 14 46 46 H 1.00898 * 110.99778 * 299.99874 * 18 16 14 47 47 H 1.09003 * 109.47469 * 305.00258 * 19 16 14 48 48 H 1.08996 * 109.47374 * 65.00449 * 19 16 14 49 49 H 1.09003 * 109.46657 * 300.00290 * 20 19 16 50 50 H 1.08996 * 109.46887 * 59.99685 * 20 19 16 51 51 H 0.97002 * 120.00846 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0502 1.4388 0.0000 4 6 1.5324 2.1602 -1.2176 5 6 0.3301 2.8398 -1.1591 6 6 -0.1446 3.5020 -2.2759 7 6 0.5821 3.4828 -3.4517 8 6 1.7848 2.8039 -3.5098 9 6 2.2600 2.1427 -2.3928 10 6 2.0580 -0.7489 -1.2418 11 6 2.3574 -2.1680 -0.6905 12 6 2.8599 -1.8466 0.7392 13 7 2.0301 -0.7125 1.1848 14 6 1.7719 -0.3838 2.4661 15 8 1.0722 0.5745 2.7171 16 6 2.3536 -1.2062 3.5869 17 1 2.3091 -2.2629 3.3230 18 7 1.5817 -0.9755 4.8153 19 6 3.8103 -0.7986 3.8158 20 6 4.4379 -1.7167 4.8667 21 6 5.8726 -1.3147 5.0926 22 1 6.2945 -0.4869 4.5421 23 6 6.6462 -2.0031 6.0028 24 7 7.8981 -1.6520 6.2004 25 14 5.9162 -3.4345 6.9556 26 1 6.1288 -4.6935 6.1974 27 1 6.5788 -3.5366 8.2806 28 1 4.4604 -3.2112 7.1460 29 1 -0.3633 0.5247 -0.8836 30 1 -0.3633 -1.0276 -0.0126 31 1 -0.3633 0.5028 0.8962 32 1 3.1400 1.4313 -0.0182 33 1 1.7053 1.9498 0.8990 34 1 -0.2406 2.8498 -0.2422 35 1 -1.0842 4.0326 -2.2303 36 1 0.2110 3.9998 -4.3243 37 1 2.3527 2.7893 -4.4283 38 1 3.1994 1.6117 -2.4385 39 1 1.2961 -0.7904 -2.0201 40 1 2.9683 -0.2808 -1.6163 41 1 3.1344 -2.6589 -1.2765 42 1 1.4520 -2.7742 -0.6594 43 1 3.9116 -1.5613 0.7165 44 1 2.7128 -2.7049 1.3948 45 1 1.9115 -1.5641 5.5655 46 1 1.6074 -0.0024 5.0810 47 1 4.3633 -0.8857 2.8806 48 1 3.8483 0.2331 4.1656 49 1 3.8849 -1.6295 5.8020 50 1 4.3999 -2.7483 4.5170 51 1 8.4425 -2.1365 6.8405 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595958817.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:47 Heat of formation + Delta-G solvation = -42.562818 kcal Electronic energy + Delta-G solvation = -29139.801123 eV Core-core repulsion = 25423.216783 eV Total energy + Delta-G solvation = -3716.584339 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.81635 -40.17910 -38.78873 -37.09841 -34.94079 -34.57560 -32.57265 -32.09808 -31.81580 -31.24866 -28.44715 -27.89366 -26.57254 -25.65083 -23.58004 -23.23648 -22.39983 -22.06003 -21.18094 -19.62454 -18.90272 -18.19665 -17.50284 -17.17185 -16.66402 -16.24249 -16.10342 -15.90904 -15.87080 -15.66388 -15.37198 -14.92394 -14.70426 -14.51081 -14.41223 -14.31995 -14.10578 -13.78904 -13.66343 -13.53073 -13.39063 -13.26185 -13.04263 -12.85498 -12.70987 -12.46169 -12.09308 -12.02585 -11.94547 -11.86081 -11.79929 -11.70920 -11.57014 -11.48404 -11.41978 -10.78145 -10.61808 -9.86816 -9.77194 -9.67471 -9.38723 -8.30624 -6.36291 0.46248 0.53059 1.37085 1.39650 1.50628 1.62501 1.92734 2.35426 2.90348 3.04782 3.37678 3.62063 3.68363 3.78566 3.85998 3.96201 4.02761 4.06113 4.14273 4.16480 4.20831 4.24942 4.32657 4.38054 4.53986 4.56620 4.64336 4.67685 4.69232 4.76888 4.82181 4.83050 4.91902 4.93629 4.98859 5.01880 5.13343 5.18477 5.22287 5.24540 5.33217 5.37047 5.43846 5.54567 5.61167 5.62883 5.66169 5.77099 6.03809 6.15295 6.24046 6.45366 6.53992 6.71770 7.20146 7.28520 8.86169 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019010 B = 0.002732 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.574303 B =10247.554922 C =10442.151585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.169 3.831 3 C -0.082 4.082 4 C -0.079 4.079 5 C -0.128 4.128 6 C -0.126 4.126 7 C -0.129 4.129 8 C -0.121 4.121 9 C -0.121 4.121 10 C -0.115 4.115 11 C -0.122 4.122 12 C 0.084 3.916 13 N -0.610 5.610 14 C 0.538 3.462 15 O -0.564 6.564 16 C 0.083 3.917 17 H 0.113 0.887 18 N -0.830 5.830 19 C -0.114 4.114 20 C -0.003 4.003 21 C -0.533 4.533 22 H 0.025 0.975 23 C 0.003 3.997 24 N -0.952 5.952 25 Si 0.953 3.047 26 H -0.263 1.263 27 H -0.289 1.289 28 H -0.240 1.240 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.042 0.958 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.109 0.891 35 H 0.135 0.865 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.132 0.868 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.354 0.646 46 H 0.344 0.656 47 H 0.061 0.939 48 H 0.038 0.962 49 H 0.024 0.976 50 H 0.030 0.970 51 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.335 1.358 -22.248 27.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.085 3.915 3 C -0.121 4.121 4 C -0.080 4.080 5 C -0.147 4.147 6 C -0.144 4.144 7 C -0.146 4.146 8 C -0.139 4.139 9 C -0.139 4.139 10 C -0.153 4.153 11 C -0.159 4.159 12 C -0.038 4.038 13 N -0.343 5.343 14 C 0.327 3.673 15 O -0.443 6.443 16 C -0.032 4.032 17 H 0.131 0.869 18 N -0.361 5.361 19 C -0.154 4.154 20 C -0.041 4.041 21 C -0.571 4.571 22 H 0.044 0.956 23 C -0.193 4.193 24 N -0.593 5.593 25 Si 0.776 3.224 26 H -0.188 1.188 27 H -0.215 1.215 28 H -0.163 1.163 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.127 0.873 35 H 0.153 0.847 36 H 0.160 0.840 37 H 0.161 0.839 38 H 0.150 0.850 39 H 0.112 0.888 40 H 0.104 0.896 41 H 0.126 0.874 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.104 0.896 45 H 0.169 0.831 46 H 0.158 0.842 47 H 0.080 0.920 48 H 0.057 0.943 49 H 0.042 0.958 50 H 0.048 0.952 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.215 1.581 -22.345 28.251 hybrid contribution 1.384 0.225 1.521 2.069 sum -15.832 1.806 -20.823 26.220 Atomic orbital electron populations 1.22093 0.94280 1.01949 1.02147 1.20997 0.94262 0.90815 0.85404 1.20848 1.00096 0.95155 0.95964 1.19693 0.95326 0.98106 0.94861 1.21155 0.96149 0.98360 0.99000 1.21374 1.00689 0.99316 0.92997 1.21454 0.95251 0.99598 0.98341 1.21441 0.96508 0.97060 0.98865 1.21246 1.00199 1.00052 0.92388 1.22760 1.02393 0.95089 0.95024 1.22794 1.02925 0.96672 0.93555 1.22662 0.94944 0.88634 0.97531 1.48650 1.50497 1.30943 1.04258 1.20389 0.79515 0.84450 0.82973 1.90597 1.39792 1.30103 1.83790 1.21413 0.91105 1.00327 0.90319 0.86913 1.58753 1.58484 1.12556 1.06341 1.21964 0.94089 0.99120 1.00252 1.19477 0.93772 0.95793 0.95042 1.21399 0.96804 1.16010 1.22920 0.95639 1.26067 0.94937 1.00611 0.97733 1.70076 1.09138 1.43163 1.36906 0.85618 0.80211 0.78987 0.77593 1.18784 1.21538 1.16290 0.90566 0.92262 0.93889 0.91540 0.92817 0.87251 0.84713 0.83988 0.83869 0.85013 0.88795 0.89627 0.87415 0.89901 0.91063 0.89612 0.83092 0.84248 0.91998 0.94349 0.95808 0.95176 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 7.80 71.98 0.56 -2.84 16 2 C 0.17 3.80 0.58 3.96 0.00 3.80 16 3 C -0.08 -2.07 4.38 29.85 0.13 -1.93 16 4 C -0.08 -1.68 4.23 -19.87 -0.08 -1.76 16 5 C -0.13 -2.70 7.89 22.27 0.18 -2.53 16 6 C -0.13 -2.13 10.05 22.27 0.22 -1.90 16 7 C -0.13 -1.85 10.05 22.27 0.22 -1.62 16 8 C -0.12 -1.74 10.05 22.27 0.22 -1.52 16 9 C -0.12 -2.08 8.66 22.27 0.19 -1.89 16 10 C -0.11 -1.77 4.98 31.79 0.16 -1.61 16 11 C -0.12 -1.67 7.08 31.99 0.23 -1.45 16 12 C 0.08 1.70 6.24 86.86 0.54 2.25 16 13 N -0.61 -15.84 2.82 -765.26 -2.16 -18.00 16 14 C 0.54 17.58 6.67 87.66 0.58 18.17 16 15 O -0.56 -21.73 13.81 -3.01 -0.04 -21.77 16 16 C 0.08 2.67 2.62 44.17 0.12 2.78 16 17 H 0.11 3.19 6.91 -2.38 -0.02 3.18 16 18 N -0.83 -26.56 8.94 -171.80 -1.54 -28.10 16 19 C -0.11 -4.35 4.77 30.59 0.15 -4.20 16 20 C 0.00 -0.15 3.81 29.85 0.11 -0.03 16 21 C -0.53 -30.06 9.66 25.60 0.25 -29.81 16 22 H 0.03 1.61 7.99 -2.91 -0.02 1.59 16 23 C 0.00 0.19 5.47 84.65 0.46 0.65 16 24 N -0.95 -59.25 13.96 21.45 0.30 -58.95 16 25 Si 0.95 42.57 27.47 68.60 1.88 44.46 16 26 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 27 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 28 H -0.24 -9.66 6.54 99.48 0.65 -9.01 16 29 H 0.08 1.56 6.16 -2.39 -0.01 1.55 16 30 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.04 1.26 6.70 -2.39 -0.02 1.24 16 32 H 0.07 1.70 8.07 -2.39 -0.02 1.68 16 33 H 0.05 1.71 6.79 -2.39 -0.02 1.69 16 34 H 0.11 2.49 8.03 -2.91 -0.02 2.47 16 35 H 0.13 1.76 8.06 -2.91 -0.02 1.73 16 36 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 37 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 38 H 0.13 1.90 7.13 -2.91 -0.02 1.88 16 39 H 0.09 1.25 7.83 -2.39 -0.02 1.23 16 40 H 0.09 1.22 6.46 -2.39 -0.02 1.20 16 41 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.07 1.51 7.87 -2.39 -0.02 1.49 16 44 H 0.09 1.64 6.92 -2.39 -0.02 1.62 16 45 H 0.35 10.67 7.55 -89.69 -0.68 9.99 16 46 H 0.34 11.57 8.58 -89.70 -0.77 10.80 16 47 H 0.06 2.33 7.41 -2.39 -0.02 2.31 16 48 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.02 1.01 5.93 -2.39 -0.01 0.99 16 50 H 0.03 1.23 7.57 -2.39 -0.02 1.21 16 51 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -71.58 391.68 2.13 -69.45 By element: Atomic # 1 Polarization: 38.93 SS G_CDS: -0.57 Total: 38.36 kcal Atomic # 6 Polarization: -29.70 SS G_CDS: 4.25 Total: -25.45 kcal Atomic # 7 Polarization: -101.65 SS G_CDS: -3.39 Total: -105.05 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.04 Total: -21.77 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 1.88 Total: 44.46 kcal Total: -71.58 2.13 -69.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595958817.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.890 kcal (2) G-P(sol) polarization free energy of solvation -71.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds