Wall clock time and date at job start Tue Mar 31 2020 15:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.86950 * 2 1 4 4 C 1.50697 * 109.46874 * 58.98691 * 3 2 1 5 5 C 1.38233 * 119.99951 * 269.72298 * 4 3 2 6 6 C 1.38238 * 119.99883 * 179.76789 * 5 4 3 7 7 C 1.38234 * 120.00144 * 0.50725 * 6 5 4 8 8 C 1.38235 * 119.99708 * 359.74468 * 7 6 5 9 9 C 1.38234 * 120.00214 * 89.99811 * 4 3 2 10 10 C 1.54318 * 110.01315 * 121.09956 * 2 1 3 11 11 C 1.55151 * 102.94375 * 97.29892 * 10 2 1 12 12 C 1.54917 * 101.58025 * 35.50254 * 11 10 2 13 13 N 1.47017 * 109.88588 * 238.98983 * 2 1 3 14 14 C 1.34784 * 125.64909 * 59.32459 * 13 2 1 15 15 O 1.21276 * 119.99906 * 0.02562 * 14 13 2 16 16 C 1.50704 * 119.99687 * 180.02562 * 14 13 2 17 17 H 1.09001 * 109.47356 * 40.00471 * 16 14 13 18 18 N 1.46901 * 109.46440 * 160.00172 * 16 14 13 19 19 C 1.52999 * 109.47197 * 280.00007 * 16 14 13 20 20 C 1.52992 * 109.47049 * 175.00210 * 19 16 14 21 21 C 1.50703 * 109.47206 * 180.02562 * 20 19 16 22 22 H 1.08003 * 119.99850 * 0.02562 * 21 20 19 23 23 C 1.37879 * 119.99947 * 180.02562 * 21 20 19 24 24 N 1.31510 * 120.00389 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99920 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47253 * 59.99374 * 25 23 21 27 27 H 1.48491 * 109.47079 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.46911 * 299.99820 * 25 23 21 29 29 H 1.09000 * 109.46838 * 181.01254 * 1 2 3 30 30 H 1.08998 * 109.47419 * 301.00942 * 1 2 3 31 31 H 1.08997 * 109.47334 * 61.01525 * 1 2 3 32 32 H 1.08998 * 109.47064 * 178.98435 * 3 2 1 33 33 H 1.08990 * 109.47540 * 298.98683 * 3 2 1 34 34 H 1.07999 * 120.00372 * 0.02562 * 5 4 3 35 35 H 1.08007 * 120.00004 * 180.23165 * 6 5 4 36 36 H 1.07994 * 120.00224 * 179.72661 * 7 6 5 37 37 H 1.07999 * 119.99807 * 179.97438 * 8 7 6 38 38 H 1.08002 * 120.00113 * 0.02562 * 9 4 3 39 39 H 1.08998 * 110.72193 * 338.93641 * 10 2 1 40 40 H 1.09005 * 110.72093 * 215.66441 * 10 2 1 41 41 H 1.08998 * 111.00631 * 277.43091 * 11 10 2 42 42 H 1.09004 * 111.00792 * 153.57489 * 11 10 2 43 43 H 1.09001 * 110.36355 * 81.83037 * 12 11 10 44 44 H 1.09003 * 110.36286 * 204.14951 * 12 11 10 45 45 H 1.00902 * 111.00108 * 60.00456 * 18 16 14 46 46 H 1.00898 * 110.99357 * 183.95050 * 18 16 14 47 47 H 1.08999 * 109.47059 * 295.00609 * 19 16 14 48 48 H 1.09001 * 109.46941 * 55.00268 * 19 16 14 49 49 H 1.08999 * 109.47515 * 300.00119 * 20 19 16 50 50 H 1.09001 * 109.47202 * 60.00218 * 20 19 16 51 51 H 0.96994 * 120.00379 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0500 1.4390 0.0000 4 6 1.5322 2.1602 1.2177 5 6 0.3326 2.8444 1.1577 6 6 -0.1447 3.5019 2.2761 7 6 0.5827 3.4840 3.4515 8 6 1.7849 2.8041 3.5099 9 6 2.2596 2.1422 2.3930 10 6 2.0581 -0.7490 1.2416 11 6 2.3575 -2.1679 0.6902 12 6 2.8599 -1.8464 -0.7395 13 7 2.0300 -0.7123 -1.1849 14 6 1.7718 -0.3834 -2.4663 15 8 1.0720 0.5748 -2.7171 16 6 2.3526 -1.2064 -3.5871 17 1 2.3075 -2.2630 -3.3232 18 7 1.5805 -0.9751 -4.8153 19 6 3.8097 -0.7997 -3.8164 20 6 4.4362 -1.7183 -4.8673 21 6 5.8715 -1.3182 -5.0927 22 1 6.2946 -0.4916 -4.5412 23 6 6.6445 -2.0073 -6.0030 24 7 6.1294 -3.0141 -6.6742 25 14 8.4239 -1.5117 -6.2819 26 1 9.1769 -1.6323 -5.0077 27 1 9.0319 -2.4032 -7.3020 28 1 8.4774 -0.1059 -6.7573 29 1 -0.3633 -1.0275 0.0182 30 1 -0.3634 0.5294 0.8808 31 1 -0.3634 0.4980 -0.8989 32 1 3.1398 1.4314 0.0182 33 1 1.7052 1.9500 -0.8988 34 1 -0.2338 2.8619 0.2384 35 1 -1.0838 4.0335 2.2304 36 1 0.2120 4.0014 4.3239 37 1 2.3534 2.7904 4.4281 38 1 3.1993 1.6117 2.4385 39 1 1.2962 -0.7906 2.0199 40 1 2.9684 -0.2807 1.6162 41 1 1.4522 -2.7741 0.6590 42 1 3.1346 -2.6589 1.2761 43 1 3.9116 -1.5610 -0.7168 44 1 2.7130 -2.7047 -1.3952 45 1 1.6069 -0.0021 -5.0811 46 1 1.9098 -1.5639 -5.5656 47 1 3.8482 0.2319 -4.1662 48 1 4.3627 -0.8872 -2.8812 49 1 4.3976 -2.7500 -4.5176 50 1 3.8831 -1.6309 -5.8025 51 1 6.6733 -3.4992 -7.3143 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595958818.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:51 Heat of formation + Delta-G solvation = -27.489491 kcal Electronic energy + Delta-G solvation = -29085.666731 eV Core-core repulsion = 25369.736020 eV Total energy + Delta-G solvation = -3715.930711 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.76091 -39.26515 -37.67148 -35.45870 -33.80345 -32.82324 -31.58349 -31.08404 -30.41393 -29.87401 -27.00608 -26.52446 -25.63103 -24.11172 -22.74592 -22.30073 -21.61371 -20.70686 -19.96796 -18.32159 -17.17418 -16.74347 -16.33333 -16.14616 -15.44099 -15.27889 -15.10819 -14.53726 -14.52879 -14.25472 -14.12882 -13.65541 -13.52060 -13.36372 -13.25429 -13.19568 -12.88562 -12.64757 -12.59365 -12.28200 -12.10721 -11.93535 -11.73524 -11.54984 -11.26963 -11.12963 -11.05129 -11.02074 -10.89315 -10.75844 -10.71196 -10.64458 -9.96921 -9.82643 -9.27773 -9.14005 -9.05993 -8.95510 -8.44490 -8.42007 -8.15588 -6.08858 -4.12022 1.19302 1.24143 2.96846 3.04853 3.27808 3.32789 3.35184 3.63553 4.34262 4.39275 4.46163 4.65198 4.74062 4.78333 4.84436 4.96792 5.01823 5.07542 5.09907 5.20275 5.22135 5.27332 5.35960 5.38144 5.49829 5.56566 5.61865 5.65400 5.73246 5.76631 5.79554 5.81209 5.83553 5.89069 5.94323 6.04403 6.12446 6.28856 6.30517 6.31414 6.35094 6.49558 6.54698 6.62361 6.85391 6.87855 7.46122 7.52256 7.62147 7.74842 7.88087 7.92061 8.30916 8.49550 8.93665 9.52794 11.02003 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016353 B = 0.002736 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.767476 B =10232.271830 C =10645.294771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.175 3.825 3 C -0.090 4.090 4 C -0.067 4.067 5 C -0.112 4.112 6 C -0.121 4.121 7 C -0.129 4.129 8 C -0.121 4.121 9 C -0.117 4.117 10 C -0.122 4.122 11 C -0.133 4.133 12 C 0.097 3.903 13 N -0.613 5.613 14 C 0.544 3.456 15 O -0.535 6.535 16 C 0.077 3.923 17 H 0.094 0.906 18 N -0.831 5.831 19 C -0.136 4.136 20 C 0.026 3.974 21 C -0.524 4.524 22 H 0.054 0.946 23 C 0.059 3.941 24 N -0.893 5.893 25 Si 0.892 3.108 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.277 1.277 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.345 0.655 46 H 0.354 0.646 47 H 0.053 0.947 48 H 0.055 0.945 49 H 0.017 0.983 50 H 0.017 0.983 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.764 6.172 20.907 24.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.090 3.910 3 C -0.128 4.128 4 C -0.068 4.068 5 C -0.130 4.130 6 C -0.139 4.139 7 C -0.147 4.147 8 C -0.139 4.139 9 C -0.135 4.135 10 C -0.160 4.160 11 C -0.171 4.171 12 C -0.026 4.026 13 N -0.349 5.349 14 C 0.333 3.667 15 O -0.411 6.411 16 C -0.038 4.038 17 H 0.112 0.888 18 N -0.363 5.363 19 C -0.175 4.175 20 C -0.011 4.011 21 C -0.562 4.562 22 H 0.072 0.928 23 C -0.143 4.143 24 N -0.532 5.532 25 Si 0.720 3.280 26 H -0.202 1.202 27 H -0.212 1.212 28 H -0.202 1.202 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.141 0.859 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.102 0.898 43 H 0.092 0.908 44 H 0.099 0.901 45 H 0.158 0.842 46 H 0.169 0.831 47 H 0.072 0.928 48 H 0.074 0.926 49 H 0.036 0.964 50 H 0.035 0.965 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.754 6.306 20.929 24.818 hybrid contribution 2.073 0.457 -0.584 2.201 sum -9.681 6.763 20.346 23.525 Atomic orbital electron populations 1.22205 0.94150 1.02034 1.03120 1.20781 0.94351 0.90893 0.84936 1.21004 1.00683 0.94686 0.96445 1.19804 0.94777 0.97210 0.94966 1.21150 0.95889 0.97256 0.98706 1.21146 0.99881 0.99635 0.93197 1.21109 0.95491 1.00112 0.97945 1.21115 0.96417 0.97979 0.98358 1.21095 0.99937 0.99799 0.92661 1.22768 1.01721 0.95237 0.96290 1.22791 1.01945 0.96889 0.95507 1.22394 0.95256 0.89456 0.95495 1.48597 1.51175 1.30419 1.04665 1.20545 0.79368 0.84811 0.81948 1.90595 1.38271 1.29079 1.83120 1.21466 0.93257 0.99223 0.89817 0.88808 1.58753 1.58734 1.12459 1.06342 1.22350 0.92360 1.01164 1.01664 1.19082 0.95317 0.94051 0.92666 1.21138 0.96364 1.15912 1.22777 0.92818 1.25005 0.98512 0.94972 0.95768 1.69933 1.36664 1.20603 1.26006 0.86653 0.84895 0.78490 0.77959 1.20218 1.21211 1.20228 0.92769 0.91726 0.90848 0.90870 0.89317 0.85941 0.86270 0.86437 0.86299 0.86151 0.90202 0.90462 0.90674 0.89809 0.90826 0.90095 0.84182 0.83117 0.92809 0.92586 0.96417 0.96466 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 7.83 37.16 0.29 -1.60 16 2 C 0.18 2.06 0.58 -130.85 -0.08 1.98 16 3 C -0.09 -1.10 4.38 -27.88 -0.12 -1.22 16 4 C -0.07 -0.72 4.22 -104.63 -0.44 -1.16 16 5 C -0.11 -1.18 7.90 -39.58 -0.31 -1.49 16 6 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 7 C -0.13 -1.09 10.05 -39.58 -0.40 -1.49 16 8 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 9 C -0.12 -1.11 8.66 -39.58 -0.34 -1.45 16 10 C -0.12 -1.12 4.98 -24.90 -0.12 -1.24 16 11 C -0.13 -1.17 7.09 -24.58 -0.17 -1.35 16 12 C 0.10 1.12 6.23 -2.53 -0.02 1.10 16 13 N -0.61 -8.40 2.82 -155.81 -0.44 -8.83 16 14 C 0.54 9.16 6.67 -10.98 -0.07 9.08 16 15 O -0.53 -10.20 13.80 5.56 0.08 -10.13 16 16 C 0.08 1.34 2.62 -68.86 -0.18 1.16 16 17 H 0.09 1.57 6.91 -51.93 -0.36 1.21 16 18 N -0.83 -14.57 8.94 -5.65 -0.05 -14.62 16 19 C -0.14 -2.68 4.77 -26.74 -0.13 -2.81 16 20 C 0.03 0.63 4.74 -27.89 -0.13 0.50 16 21 C -0.52 -14.32 9.11 -34.44 -0.31 -14.64 16 22 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 23 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 24 N -0.89 -25.96 13.29 55.43 0.74 -25.23 16 25 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.69 6.16 -51.93 -0.32 0.37 16 31 H 0.07 1.06 6.69 -51.93 -0.35 0.71 16 32 H 0.07 0.90 8.07 -51.93 -0.42 0.48 16 33 H 0.09 1.31 6.78 -51.93 -0.35 0.96 16 34 H 0.12 1.30 8.05 -52.49 -0.42 0.88 16 35 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 36 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 38 H 0.12 0.99 7.13 -52.49 -0.37 0.62 16 39 H 0.08 0.68 7.83 -51.93 -0.41 0.27 16 40 H 0.08 0.66 6.46 -51.93 -0.34 0.32 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.86 7.87 -51.93 -0.41 0.45 16 44 H 0.08 0.94 6.92 -51.93 -0.36 0.58 16 45 H 0.35 6.12 8.58 -39.29 -0.34 5.78 16 46 H 0.35 6.21 7.55 -39.29 -0.30 5.91 16 47 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 48 H 0.06 1.07 7.41 -51.93 -0.38 0.69 16 49 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 50 H 0.02 0.43 6.87 -51.93 -0.36 0.08 16 51 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 395.30 15.07 5.96 5.96 Total: -1.00 -30.87 395.30 -10.58 -41.45 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -8.40 Total: 11.19 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -3.44 Total: -16.00 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: 0.25 Total: -48.68 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.08 Total: -10.13 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.87 -10.58 -41.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595958818.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.956 kcal (2) G-P(sol) polarization free energy of solvation -30.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds