Wall clock time and date at job start Tue Mar 31 2020 15:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.86950 * 2 1 4 4 C 1.50697 * 109.46874 * 58.98691 * 3 2 1 5 5 C 1.38233 * 119.99951 * 269.72298 * 4 3 2 6 6 C 1.38238 * 119.99883 * 179.76789 * 5 4 3 7 7 C 1.38234 * 120.00144 * 0.50725 * 6 5 4 8 8 C 1.38235 * 119.99708 * 359.74468 * 7 6 5 9 9 C 1.38234 * 120.00214 * 89.99811 * 4 3 2 10 10 C 1.54318 * 110.01315 * 121.09956 * 2 1 3 11 11 C 1.55151 * 102.94375 * 97.29892 * 10 2 1 12 12 C 1.54917 * 101.58025 * 35.50254 * 11 10 2 13 13 N 1.47017 * 109.88588 * 238.98983 * 2 1 3 14 14 C 1.34784 * 125.64909 * 59.32459 * 13 2 1 15 15 O 1.21276 * 119.99906 * 0.02562 * 14 13 2 16 16 C 1.50704 * 119.99687 * 180.02562 * 14 13 2 17 17 H 1.09001 * 109.47356 * 40.00471 * 16 14 13 18 18 N 1.46901 * 109.46440 * 160.00172 * 16 14 13 19 19 C 1.52999 * 109.47197 * 280.00007 * 16 14 13 20 20 C 1.52992 * 109.47049 * 175.00210 * 19 16 14 21 21 C 1.50703 * 109.47206 * 180.02562 * 20 19 16 22 22 H 1.08003 * 119.99850 * 0.02562 * 21 20 19 23 23 C 1.37879 * 119.99947 * 180.02562 * 21 20 19 24 24 N 1.31510 * 120.00389 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99920 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47253 * 59.99374 * 25 23 21 27 27 H 1.48491 * 109.47079 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.46911 * 299.99820 * 25 23 21 29 29 H 1.09000 * 109.46838 * 181.01254 * 1 2 3 30 30 H 1.08998 * 109.47419 * 301.00942 * 1 2 3 31 31 H 1.08997 * 109.47334 * 61.01525 * 1 2 3 32 32 H 1.08998 * 109.47064 * 178.98435 * 3 2 1 33 33 H 1.08990 * 109.47540 * 298.98683 * 3 2 1 34 34 H 1.07999 * 120.00372 * 0.02562 * 5 4 3 35 35 H 1.08007 * 120.00004 * 180.23165 * 6 5 4 36 36 H 1.07994 * 120.00224 * 179.72661 * 7 6 5 37 37 H 1.07999 * 119.99807 * 179.97438 * 8 7 6 38 38 H 1.08002 * 120.00113 * 0.02562 * 9 4 3 39 39 H 1.08998 * 110.72193 * 338.93641 * 10 2 1 40 40 H 1.09005 * 110.72093 * 215.66441 * 10 2 1 41 41 H 1.08998 * 111.00631 * 277.43091 * 11 10 2 42 42 H 1.09004 * 111.00792 * 153.57489 * 11 10 2 43 43 H 1.09001 * 110.36355 * 81.83037 * 12 11 10 44 44 H 1.09003 * 110.36286 * 204.14951 * 12 11 10 45 45 H 1.00902 * 111.00108 * 60.00456 * 18 16 14 46 46 H 1.00898 * 110.99357 * 183.95050 * 18 16 14 47 47 H 1.08999 * 109.47059 * 295.00609 * 19 16 14 48 48 H 1.09001 * 109.46941 * 55.00268 * 19 16 14 49 49 H 1.08999 * 109.47515 * 300.00119 * 20 19 16 50 50 H 1.09001 * 109.47202 * 60.00218 * 20 19 16 51 51 H 0.96994 * 120.00379 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0500 1.4390 0.0000 4 6 1.5322 2.1602 1.2177 5 6 0.3326 2.8444 1.1577 6 6 -0.1447 3.5019 2.2761 7 6 0.5827 3.4840 3.4515 8 6 1.7849 2.8041 3.5099 9 6 2.2596 2.1422 2.3930 10 6 2.0581 -0.7490 1.2416 11 6 2.3575 -2.1679 0.6902 12 6 2.8599 -1.8464 -0.7395 13 7 2.0300 -0.7123 -1.1849 14 6 1.7718 -0.3834 -2.4663 15 8 1.0720 0.5748 -2.7171 16 6 2.3526 -1.2064 -3.5871 17 1 2.3075 -2.2630 -3.3232 18 7 1.5805 -0.9751 -4.8153 19 6 3.8097 -0.7997 -3.8164 20 6 4.4362 -1.7183 -4.8673 21 6 5.8715 -1.3182 -5.0927 22 1 6.2946 -0.4916 -4.5412 23 6 6.6445 -2.0073 -6.0030 24 7 6.1294 -3.0141 -6.6742 25 14 8.4239 -1.5117 -6.2819 26 1 9.1769 -1.6323 -5.0077 27 1 9.0319 -2.4032 -7.3020 28 1 8.4774 -0.1059 -6.7573 29 1 -0.3633 -1.0275 0.0182 30 1 -0.3634 0.5294 0.8808 31 1 -0.3634 0.4980 -0.8989 32 1 3.1398 1.4314 0.0182 33 1 1.7052 1.9500 -0.8988 34 1 -0.2338 2.8619 0.2384 35 1 -1.0838 4.0335 2.2304 36 1 0.2120 4.0014 4.3239 37 1 2.3534 2.7904 4.4281 38 1 3.1993 1.6117 2.4385 39 1 1.2962 -0.7906 2.0199 40 1 2.9684 -0.2807 1.6162 41 1 1.4522 -2.7741 0.6590 42 1 3.1346 -2.6589 1.2761 43 1 3.9116 -1.5610 -0.7168 44 1 2.7130 -2.7047 -1.3952 45 1 1.6069 -0.0021 -5.0811 46 1 1.9098 -1.5639 -5.5656 47 1 3.8482 0.2319 -4.1662 48 1 4.3627 -0.8872 -2.8812 49 1 4.3976 -2.7500 -4.5176 50 1 3.8831 -1.6309 -5.8025 51 1 6.6733 -3.4992 -7.3143 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595958818.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:50 Heat of formation + Delta-G solvation = -44.673716 kcal Electronic energy + Delta-G solvation = -29086.411895 eV Core-core repulsion = 25369.736020 eV Total energy + Delta-G solvation = -3716.675875 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.81282 -40.16868 -38.77818 -37.04892 -34.96799 -34.56439 -32.56900 -31.80672 -31.70272 -31.24494 -28.21768 -27.87496 -26.56993 -25.78596 -23.64713 -23.28169 -22.41627 -22.15545 -21.15692 -19.58330 -18.60484 -18.06550 -17.49478 -17.16261 -16.72192 -16.38706 -16.08888 -15.90709 -15.82849 -15.63160 -15.33156 -14.82080 -14.69500 -14.41682 -14.32483 -14.19089 -14.06957 -13.76208 -13.63258 -13.48186 -13.36903 -13.21016 -12.95136 -12.85347 -12.68755 -12.54081 -12.44818 -12.01668 -11.95827 -11.84051 -11.78555 -11.69078 -11.54131 -11.48224 -11.32959 -10.60019 -10.56262 -9.86533 -9.76279 -9.66241 -9.38284 -8.22025 -6.32688 0.47081 0.53982 1.39170 1.40750 1.48796 1.62564 1.92523 2.39226 2.91222 3.11374 3.38423 3.62047 3.70430 3.80191 3.87157 3.96922 4.04745 4.06804 4.16244 4.21141 4.22243 4.25575 4.33475 4.38601 4.55006 4.61056 4.66288 4.68664 4.76271 4.80639 4.82932 4.83740 4.94213 4.99202 5.02013 5.05610 5.13435 5.19184 5.23316 5.24621 5.36965 5.44436 5.55113 5.62984 5.63982 5.67038 5.78095 5.78827 6.04910 6.16192 6.19921 6.44249 6.53030 6.81969 7.20069 7.36352 8.88575 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016353 B = 0.002736 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.767476 B =10232.271830 C =10645.294771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.169 3.831 3 C -0.082 4.082 4 C -0.079 4.079 5 C -0.129 4.129 6 C -0.126 4.126 7 C -0.129 4.129 8 C -0.121 4.121 9 C -0.120 4.120 10 C -0.114 4.114 11 C -0.122 4.122 12 C 0.085 3.915 13 N -0.610 5.610 14 C 0.540 3.460 15 O -0.564 6.564 16 C 0.084 3.916 17 H 0.102 0.898 18 N -0.830 5.830 19 C -0.116 4.116 20 C 0.034 3.966 21 C -0.545 4.545 22 H 0.054 0.946 23 C 0.007 3.993 24 N -0.926 5.926 25 Si 0.958 3.042 26 H -0.266 1.266 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.041 0.959 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.108 0.892 35 H 0.134 0.866 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.134 0.866 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.109 0.891 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.343 0.657 46 H 0.352 0.648 47 H 0.040 0.960 48 H 0.063 0.937 49 H 0.002 0.998 50 H 0.001 0.999 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.907 6.246 23.965 26.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.085 3.915 3 C -0.120 4.120 4 C -0.080 4.080 5 C -0.147 4.147 6 C -0.144 4.144 7 C -0.147 4.147 8 C -0.139 4.139 9 C -0.138 4.138 10 C -0.151 4.151 11 C -0.160 4.160 12 C -0.037 4.037 13 N -0.343 5.343 14 C 0.329 3.671 15 O -0.443 6.443 16 C -0.031 4.031 17 H 0.120 0.880 18 N -0.361 5.361 19 C -0.156 4.156 20 C -0.003 4.003 21 C -0.583 4.583 22 H 0.072 0.928 23 C -0.192 4.192 24 N -0.566 5.566 25 Si 0.783 3.217 26 H -0.191 1.191 27 H -0.208 1.208 28 H -0.197 1.197 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.127 0.873 35 H 0.152 0.848 36 H 0.160 0.840 37 H 0.162 0.838 38 H 0.151 0.849 39 H 0.112 0.888 40 H 0.107 0.893 41 H 0.099 0.901 42 H 0.127 0.873 43 H 0.092 0.908 44 H 0.097 0.903 45 H 0.156 0.844 46 H 0.167 0.833 47 H 0.059 0.941 48 H 0.082 0.918 49 H 0.020 0.980 50 H 0.019 0.981 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.893 6.370 24.026 27.139 hybrid contribution 1.769 0.461 -1.508 2.370 sum -9.125 6.831 22.518 25.239 Atomic orbital electron populations 1.22101 0.94434 1.01875 1.02163 1.21011 0.94189 0.90972 0.85339 1.20844 1.00237 0.94948 0.95968 1.19691 0.95326 0.98045 0.94897 1.21154 0.96217 0.98396 0.98948 1.21368 1.00650 0.99376 0.93019 1.21453 0.95277 0.99613 0.98317 1.21444 0.96499 0.97027 0.98888 1.21252 1.00215 1.00012 0.92317 1.22758 1.02498 0.94915 0.94965 1.22794 1.02885 0.96810 0.93472 1.22646 0.95073 0.88521 0.97454 1.48642 1.50525 1.30927 1.04224 1.20340 0.79436 0.84371 0.82938 1.90587 1.39723 1.30136 1.83812 1.21378 0.91649 0.99822 0.90267 0.87998 1.58764 1.58574 1.12311 1.06448 1.22070 0.93901 0.99200 1.00425 1.18928 0.94354 0.93947 0.93112 1.21561 0.97901 1.15942 1.22904 0.92819 1.25857 1.02952 0.94906 0.95487 1.70049 1.38312 1.21632 1.26599 0.85604 0.79656 0.78193 0.78238 1.19076 1.20750 1.19741 0.92439 0.90446 0.93943 0.91251 0.92825 0.87346 0.84789 0.84018 0.83822 0.84858 0.88771 0.89332 0.90145 0.87266 0.90775 0.90296 0.84375 0.83303 0.94091 0.91844 0.98004 0.98114 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 7.83 71.98 0.56 -3.00 16 2 C 0.17 3.89 0.58 3.95 0.00 3.89 16 3 C -0.08 -2.04 4.38 29.85 0.13 -1.91 16 4 C -0.08 -1.65 4.22 -19.87 -0.08 -1.74 16 5 C -0.13 -2.71 7.90 22.27 0.18 -2.54 16 6 C -0.13 -2.13 10.05 22.27 0.22 -1.91 16 7 C -0.13 -1.83 10.05 22.27 0.22 -1.60 16 8 C -0.12 -1.70 10.05 22.27 0.22 -1.47 16 9 C -0.12 -2.01 8.66 22.27 0.19 -1.82 16 10 C -0.11 -1.79 4.98 31.78 0.16 -1.63 16 11 C -0.12 -1.80 7.09 31.99 0.23 -1.57 16 12 C 0.09 1.85 6.23 86.86 0.54 2.40 16 13 N -0.61 -16.65 2.82 -765.26 -2.16 -18.81 16 14 C 0.54 18.69 6.67 87.66 0.58 19.28 16 15 O -0.56 -22.56 13.80 -3.02 -0.04 -22.61 16 16 C 0.08 2.98 2.62 44.17 0.12 3.10 16 17 H 0.10 3.45 6.91 -2.39 -0.02 3.43 16 18 N -0.83 -30.11 8.94 -171.79 -1.54 -31.64 16 19 C -0.12 -4.69 4.77 30.59 0.15 -4.54 16 20 C 0.03 1.68 4.74 29.85 0.14 1.82 16 21 C -0.55 -30.11 9.11 25.60 0.23 -29.87 16 22 H 0.05 2.90 7.74 -2.91 -0.02 2.87 16 23 C 0.01 0.37 5.46 84.66 0.46 0.83 16 24 N -0.93 -54.41 13.29 21.45 0.28 -54.13 16 25 Si 0.96 43.38 29.54 68.60 2.03 45.41 16 26 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 27 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 28 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.08 1.64 6.16 -2.39 -0.01 1.62 16 31 H 0.04 1.29 6.69 -2.39 -0.02 1.27 16 32 H 0.07 1.72 8.07 -2.39 -0.02 1.70 16 33 H 0.05 1.71 6.78 -2.39 -0.02 1.69 16 34 H 0.11 2.49 8.05 -2.91 -0.02 2.47 16 35 H 0.13 1.76 8.06 -2.91 -0.02 1.74 16 36 H 0.14 1.30 8.06 -2.91 -0.02 1.27 16 37 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 38 H 0.13 1.82 7.13 -2.91 -0.02 1.80 16 39 H 0.09 1.28 7.83 -2.39 -0.02 1.26 16 40 H 0.09 1.23 6.46 -2.38 -0.02 1.21 16 41 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 43 H 0.07 1.63 7.87 -2.39 -0.02 1.61 16 44 H 0.08 1.75 6.92 -2.39 -0.02 1.74 16 45 H 0.34 12.70 8.58 -89.69 -0.77 11.93 16 46 H 0.35 12.84 7.55 -89.70 -0.68 12.17 16 47 H 0.04 1.74 8.14 -2.39 -0.02 1.73 16 48 H 0.06 2.44 7.41 -2.39 -0.02 2.42 16 49 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 50 H 0.00 0.03 6.87 -2.39 -0.02 0.01 16 51 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -67.59 395.30 2.32 -65.27 By element: Atomic # 1 Polarization: 39.32 SS G_CDS: -0.52 Total: 38.80 kcal Atomic # 6 Polarization: -26.55 SS G_CDS: 4.26 Total: -22.29 kcal Atomic # 7 Polarization: -101.17 SS G_CDS: -3.41 Total: -104.58 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.04 Total: -22.61 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -67.59 2.32 -65.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595958818.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.592 kcal (2) G-P(sol) polarization free energy of solvation -67.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds