Wall clock time and date at job start Tue Mar 31 2020 15:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38138 * 120.02994 * 2 1 4 4 C 1.38258 * 120.06661 * 180.02562 * 3 2 1 5 5 C 1.38304 * 120.14153 * 0.02562 * 4 3 2 6 6 C 1.38097 * 120.06725 * 0.23716 * 5 4 3 7 7 C 1.50700 * 120.03006 * 179.74046 * 6 5 4 8 8 C 1.52991 * 109.47576 * 300.00015 * 7 6 5 9 9 C 1.52997 * 109.47057 * 60.00563 * 7 6 5 10 10 C 1.38835 * 120.03530 * 180.02562 * 2 1 3 11 11 N 1.39946 * 120.07649 * 0.02562 * 10 2 1 12 12 C 1.34783 * 119.99836 * 47.10107 * 11 10 2 13 13 O 1.21586 * 119.99508 * 3.39131 * 12 11 10 14 14 N 1.34773 * 119.99960 * 183.39137 * 12 11 10 15 15 C 1.46926 * 120.63139 * 354.77768 * 14 12 11 16 16 C 1.53192 * 108.77355 * 233.58812 * 15 14 12 17 17 C 1.53039 * 109.31155 * 305.36196 * 16 15 14 18 18 C 1.53036 * 109.53927 * 61.37048 * 17 16 15 19 19 H 1.08995 * 109.49916 * 58.58392 * 18 17 16 20 20 C 1.50695 * 109.50148 * 178.65196 * 18 17 16 21 21 H 1.08005 * 119.99863 * 34.77776 * 20 18 17 22 22 C 1.37881 * 120.00317 * 214.77863 * 20 18 17 23 23 N 1.31505 * 120.00144 * 184.60269 * 22 20 18 24 24 Si 1.86796 * 119.99580 * 4.60113 * 22 20 18 25 25 H 1.48508 * 109.47185 * 94.53023 * 24 22 20 26 26 H 1.48504 * 109.47393 * 214.52718 * 24 22 20 27 27 H 1.48498 * 109.47546 * 334.52742 * 24 22 20 28 28 C 1.46928 * 120.62933 * 174.49700 * 14 12 11 29 29 H 1.09000 * 109.46870 * 82.64753 * 1 2 3 30 30 H 1.09003 * 109.47045 * 202.63653 * 1 2 3 31 31 H 1.08995 * 109.47637 * 322.64289 * 1 2 3 32 32 H 1.07998 * 119.96848 * 0.04244 * 3 2 1 33 33 H 1.07998 * 119.93053 * 180.02562 * 4 3 2 34 34 H 1.07999 * 119.96853 * 179.97438 * 5 4 3 35 35 H 1.09002 * 109.46647 * 180.02562 * 7 6 5 36 36 H 1.09002 * 109.47051 * 60.00348 * 8 7 6 37 37 H 1.08998 * 109.47408 * 180.02562 * 8 7 6 38 38 H 1.09006 * 109.47143 * 300.00288 * 8 7 6 39 39 H 1.08997 * 109.47603 * 59.99584 * 9 7 6 40 40 H 1.09002 * 109.47237 * 179.97438 * 9 7 6 41 41 H 1.09002 * 109.47026 * 299.99320 * 9 7 6 42 42 H 0.96993 * 120.00307 * 227.11157 * 11 10 2 43 43 H 1.08997 * 109.58344 * 353.37065 * 15 14 12 44 44 H 1.08996 * 109.58823 * 113.65945 * 15 14 12 45 45 H 1.08994 * 109.50178 * 65.31454 * 16 15 14 46 46 H 1.09002 * 109.49668 * 185.41455 * 16 15 14 47 47 H 1.09010 * 109.46185 * 181.38968 * 17 16 15 48 48 H 1.08997 * 109.46243 * 301.34435 * 17 16 15 49 49 H 0.97006 * 119.99819 * 180.02562 * 23 22 20 50 50 H 1.09002 * 109.58616 * 246.20263 * 28 14 12 51 51 H 1.08996 * 109.58600 * 6.62929 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1959 0.0000 4 6 3.5809 1.1968 -0.0005 5 6 4.2762 0.0012 -0.0016 6 6 3.5908 -1.1977 -0.0071 7 6 4.3492 -2.4999 -0.0142 8 6 5.2282 -2.5715 -1.2643 9 6 5.2299 -2.5839 1.2341 10 6 2.2019 -1.2019 -0.0005 11 7 1.5046 -2.4152 -0.0016 12 6 0.4802 -2.6030 -0.8572 13 8 0.2014 -1.7426 -1.6698 14 7 -0.2350 -3.7444 -0.8121 15 6 0.1590 -4.8397 0.0846 16 6 0.2907 -6.1260 -0.7368 17 6 -1.0128 -6.3756 -1.4989 18 6 -1.2743 -5.2137 -2.4599 19 1 -0.4379 -5.1190 -3.1523 20 6 -2.5405 -5.4761 -3.2337 21 1 -3.3661 -5.9873 -2.7609 22 6 -2.6451 -5.0636 -4.5452 23 7 -3.7804 -5.2110 -5.1923 24 14 -1.1742 -4.2954 -5.4027 25 1 -0.4352 -5.3431 -6.1521 26 1 -1.6423 -3.2489 -6.3467 27 1 -0.2755 -3.6833 -4.3913 28 6 -1.4270 -3.9147 -1.6540 29 1 -0.3633 0.1315 -1.0192 30 1 -0.3633 -0.9485 0.3955 31 1 -0.3634 0.8168 0.6235 32 1 1.6583 2.1312 0.0007 33 1 4.1192 2.1331 -0.0001 34 1 5.3561 0.0052 -0.0024 35 1 3.6439 -3.3310 -0.0183 36 1 5.9335 -1.7404 -1.2607 37 1 5.7764 -3.5136 -1.2696 38 1 4.6007 -2.5116 -2.1536 39 1 4.6037 -2.5330 2.1247 40 1 5.7782 -3.5260 1.2292 41 1 5.9352 -1.7528 1.2377 42 1 1.7583 -3.1210 0.6134 43 1 1.1157 -4.6041 0.5506 44 1 -0.6003 -4.9719 0.8554 45 1 1.1124 -6.0227 -1.4454 46 1 0.4884 -6.9650 -0.0696 47 1 -0.9305 -7.3036 -2.0650 48 1 -1.8379 -6.4543 -0.7911 49 1 -3.8539 -4.9211 -6.1151 50 1 -2.3141 -3.9747 -1.0235 51 1 -1.5169 -3.0688 -2.3354 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596632347.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:29 Heat of formation + Delta-G solvation = -8.702692 kcal Electronic energy + Delta-G solvation = -29898.955733 eV Core-core repulsion = 26183.839679 eV Total energy + Delta-G solvation = -3715.116054 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.96702 -39.21285 -37.12970 -35.74865 -34.59909 -33.33243 -32.05595 -31.45948 -30.51003 -29.10128 -27.32197 -26.75995 -25.25716 -24.76440 -23.29775 -21.93553 -21.89272 -20.12898 -19.53646 -19.06214 -18.24809 -17.21078 -16.76220 -16.16746 -15.59631 -15.00924 -14.72143 -14.44089 -14.08029 -14.02991 -13.96757 -13.89076 -13.63736 -13.35731 -13.27180 -12.92102 -12.75018 -12.55379 -12.44444 -12.35044 -12.18652 -12.03436 -11.74985 -11.33257 -11.28657 -11.23352 -11.09661 -10.87099 -10.78415 -10.73245 -10.57783 -10.10145 -9.97562 -9.70195 -9.63968 -9.33048 -9.10221 -8.58086 -8.53007 -8.24620 -7.87166 -6.11373 -4.12360 1.31943 1.40857 2.88228 3.32007 3.42891 3.43390 3.52917 3.78049 4.04799 4.43915 4.49134 4.63978 4.96321 5.01307 5.02226 5.04536 5.17926 5.19904 5.28850 5.30033 5.39536 5.43380 5.47535 5.58232 5.58513 5.64179 5.75800 5.79680 5.86581 5.94661 5.95801 5.98784 6.02703 6.09136 6.12849 6.20205 6.35270 6.41754 6.44321 6.49374 6.57950 6.61708 6.64511 6.70744 6.73763 6.90228 7.12963 7.19205 7.30337 7.39064 7.74324 8.16023 8.47953 8.87491 8.94106 9.52393 11.00932 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013916 B = 0.003888 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.632352 B = 7199.714943 C = 7711.193708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.071 4.071 3 C -0.113 4.113 4 C -0.129 4.129 5 C -0.110 4.110 6 C -0.094 4.094 7 C -0.055 4.055 8 C -0.141 4.141 9 C -0.142 4.142 10 C 0.168 3.832 11 N -0.695 5.695 12 C 0.699 3.301 13 O -0.570 6.570 14 N -0.622 5.622 15 C 0.115 3.885 16 C -0.137 4.137 17 C -0.104 4.104 18 C 0.003 3.997 19 H 0.038 0.962 20 C -0.514 4.514 21 H 0.075 0.925 22 C 0.077 3.923 23 N -0.895 5.895 24 Si 0.869 3.131 25 H -0.279 1.279 26 H -0.288 1.288 27 H -0.255 1.255 28 C 0.131 3.869 29 H 0.091 0.909 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.400 0.600 43 H 0.060 0.940 44 H 0.067 0.933 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.059 0.941 48 H 0.054 0.946 49 H 0.265 0.735 50 H 0.059 0.941 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.520 6.728 15.483 24.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.073 4.073 3 C -0.131 4.131 4 C -0.148 4.148 5 C -0.129 4.129 6 C -0.097 4.097 7 C -0.074 4.074 8 C -0.199 4.199 9 C -0.200 4.200 10 C 0.074 3.926 11 N -0.347 5.347 12 C 0.401 3.599 13 O -0.447 6.447 14 N -0.359 5.359 15 C -0.009 4.009 16 C -0.175 4.175 17 C -0.141 4.141 18 C -0.017 4.017 19 H 0.056 0.944 20 C -0.552 4.552 21 H 0.093 0.907 22 C -0.126 4.126 23 N -0.532 5.532 24 Si 0.696 3.304 25 H -0.205 1.205 26 H -0.214 1.214 27 H -0.179 1.179 28 C 0.010 3.990 29 H 0.110 0.890 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.140 0.860 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.239 0.761 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.078 0.922 48 H 0.072 0.928 49 H 0.074 0.926 50 H 0.078 0.922 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 17.121 7.318 14.688 23.715 hybrid contribution 0.822 0.005 -0.314 0.880 sum 17.943 7.323 14.374 24.129 Atomic orbital electron populations 1.20911 0.90553 1.01102 1.03199 1.19877 0.96678 0.91704 0.99077 1.20861 0.94098 0.97076 1.01112 1.21015 0.94154 0.97772 1.01868 1.20690 0.99365 0.91373 1.01445 1.19709 0.91645 0.95511 1.02814 1.20025 0.96824 0.94536 0.96007 1.21818 0.99281 1.01601 0.97173 1.21861 0.99408 1.01829 0.96859 1.17101 0.89501 0.84897 1.01145 1.42873 1.34966 1.16219 1.40617 1.15885 0.79438 0.83094 0.81451 1.90929 1.70485 1.43549 1.39692 1.47785 1.30140 1.13554 1.44388 1.21567 0.98867 0.87933 0.92527 1.22001 1.00425 0.95854 0.99205 1.21566 0.94358 1.00184 0.98042 1.19622 0.98048 0.90130 0.93883 0.94387 1.20894 0.99638 1.38413 0.96298 0.90703 1.25059 0.95509 0.94602 0.97429 1.69904 1.24720 1.47223 1.11393 0.86936 0.83922 0.79489 0.80030 1.20543 1.21371 1.17862 1.22455 0.82821 1.01462 0.92245 0.89019 0.92466 0.93137 0.86039 0.86265 0.86153 0.90822 0.92475 0.92434 0.92422 0.92661 0.92393 0.92380 0.76102 0.92129 0.91485 0.92155 0.91754 0.92203 0.92758 0.92557 0.92235 0.89898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.54 8.08 36.01 0.29 -1.25 16 2 C -0.07 -1.04 5.48 -104.44 -0.57 -1.61 16 3 C -0.11 -1.40 9.72 -39.61 -0.39 -1.79 16 4 C -0.13 -1.41 10.04 -39.55 -0.40 -1.81 16 5 C -0.11 -1.20 8.71 -39.61 -0.34 -1.55 16 6 C -0.09 -1.14 4.80 -104.43 -0.50 -1.65 16 7 C -0.06 -0.56 3.03 -91.78 -0.28 -0.84 16 8 C -0.14 -1.41 9.01 37.15 0.33 -1.08 16 9 C -0.14 -1.12 9.01 37.16 0.33 -0.78 16 10 C 0.17 2.42 5.97 -83.69 -0.50 1.92 16 11 N -0.69 -9.94 4.11 -14.23 -0.06 -10.00 16 12 C 0.70 12.71 6.38 -86.92 -0.55 12.16 16 13 O -0.57 -12.52 12.02 5.29 0.06 -12.46 16 14 N -0.62 -11.00 2.97 -178.23 -0.53 -11.53 16 15 C 0.11 1.54 6.38 -3.71 -0.02 1.51 16 16 C -0.14 -1.95 6.08 -26.61 -0.16 -2.12 16 17 C -0.10 -1.91 5.15 -26.69 -0.14 -2.04 16 18 C 0.00 0.07 1.89 -91.43 -0.17 -0.10 16 19 H 0.04 0.92 5.09 -51.93 -0.26 0.66 16 20 C -0.51 -13.97 8.87 -34.44 -0.31 -14.27 16 21 H 0.07 2.18 8.06 -52.48 -0.42 1.76 16 22 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 23 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 24 Si 0.87 22.27 27.29 -169.99 -4.64 17.63 16 25 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 27 H -0.25 -6.60 6.39 56.52 0.36 -6.23 16 28 C 0.13 2.79 5.74 -3.48 -0.02 2.77 16 29 H 0.09 1.63 6.75 -51.93 -0.35 1.28 16 30 H 0.06 0.93 5.96 -51.93 -0.31 0.62 16 31 H 0.05 0.64 8.13 -51.93 -0.42 0.22 16 32 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 34 H 0.12 1.05 7.10 -52.49 -0.37 0.67 16 35 H 0.07 0.78 6.36 -51.93 -0.33 0.45 16 36 H 0.06 0.51 7.39 -51.93 -0.38 0.12 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.42 7.39 -51.93 -0.38 0.04 16 42 H 0.40 4.58 5.36 -40.82 -0.22 4.36 16 43 H 0.06 0.63 5.66 -51.93 -0.29 0.34 16 44 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 48 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 49 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 50 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 51 H 0.08 2.01 7.00 -51.93 -0.36 1.65 16 LS Contribution 386.84 15.07 5.83 5.83 Total: -1.00 -32.39 386.84 -10.41 -42.81 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -8.36 Total: 4.54 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -3.49 Total: -10.42 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: 0.19 Total: -47.93 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.06 Total: -12.46 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.64 Total: 17.63 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.39 -10.41 -42.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596632347.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.104 kcal (2) G-P(sol) polarization free energy of solvation -32.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds