Wall clock time and date at job start Tue Mar 31 2020 15:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38138 * 120.02994 * 2 1 4 4 C 1.38258 * 120.06661 * 180.02562 * 3 2 1 5 5 C 1.38304 * 120.14153 * 0.02562 * 4 3 2 6 6 C 1.38097 * 120.06725 * 0.23716 * 5 4 3 7 7 C 1.50700 * 120.03006 * 179.74046 * 6 5 4 8 8 C 1.52991 * 109.47576 * 300.00015 * 7 6 5 9 9 C 1.52997 * 109.47057 * 60.00563 * 7 6 5 10 10 C 1.38835 * 120.03530 * 180.02562 * 2 1 3 11 11 N 1.39946 * 120.07649 * 0.02562 * 10 2 1 12 12 C 1.34783 * 119.99836 * 47.10107 * 11 10 2 13 13 O 1.21586 * 119.99508 * 3.39131 * 12 11 10 14 14 N 1.34773 * 119.99960 * 183.39137 * 12 11 10 15 15 C 1.46926 * 120.63139 * 354.77768 * 14 12 11 16 16 C 1.53192 * 108.77355 * 233.58812 * 15 14 12 17 17 C 1.53039 * 109.31155 * 305.36196 * 16 15 14 18 18 C 1.53036 * 109.53927 * 61.37048 * 17 16 15 19 19 H 1.08995 * 109.49916 * 58.58392 * 18 17 16 20 20 C 1.50695 * 109.50148 * 178.65196 * 18 17 16 21 21 H 1.08005 * 119.99863 * 34.77776 * 20 18 17 22 22 C 1.37881 * 120.00317 * 214.77863 * 20 18 17 23 23 N 1.31505 * 120.00144 * 184.60269 * 22 20 18 24 24 Si 1.86796 * 119.99580 * 4.60113 * 22 20 18 25 25 H 1.48508 * 109.47185 * 94.53023 * 24 22 20 26 26 H 1.48504 * 109.47393 * 214.52718 * 24 22 20 27 27 H 1.48498 * 109.47546 * 334.52742 * 24 22 20 28 28 C 1.46928 * 120.62933 * 174.49700 * 14 12 11 29 29 H 1.09000 * 109.46870 * 82.64753 * 1 2 3 30 30 H 1.09003 * 109.47045 * 202.63653 * 1 2 3 31 31 H 1.08995 * 109.47637 * 322.64289 * 1 2 3 32 32 H 1.07998 * 119.96848 * 0.04244 * 3 2 1 33 33 H 1.07998 * 119.93053 * 180.02562 * 4 3 2 34 34 H 1.07999 * 119.96853 * 179.97438 * 5 4 3 35 35 H 1.09002 * 109.46647 * 180.02562 * 7 6 5 36 36 H 1.09002 * 109.47051 * 60.00348 * 8 7 6 37 37 H 1.08998 * 109.47408 * 180.02562 * 8 7 6 38 38 H 1.09006 * 109.47143 * 300.00288 * 8 7 6 39 39 H 1.08997 * 109.47603 * 59.99584 * 9 7 6 40 40 H 1.09002 * 109.47237 * 179.97438 * 9 7 6 41 41 H 1.09002 * 109.47026 * 299.99320 * 9 7 6 42 42 H 0.96993 * 120.00307 * 227.11157 * 11 10 2 43 43 H 1.08997 * 109.58344 * 353.37065 * 15 14 12 44 44 H 1.08996 * 109.58823 * 113.65945 * 15 14 12 45 45 H 1.08994 * 109.50178 * 65.31454 * 16 15 14 46 46 H 1.09002 * 109.49668 * 185.41455 * 16 15 14 47 47 H 1.09010 * 109.46185 * 181.38968 * 17 16 15 48 48 H 1.08997 * 109.46243 * 301.34435 * 17 16 15 49 49 H 0.97006 * 119.99819 * 180.02562 * 23 22 20 50 50 H 1.09002 * 109.58616 * 246.20263 * 28 14 12 51 51 H 1.08996 * 109.58600 * 6.62929 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1959 0.0000 4 6 3.5809 1.1968 -0.0005 5 6 4.2762 0.0012 -0.0016 6 6 3.5908 -1.1977 -0.0071 7 6 4.3492 -2.4999 -0.0142 8 6 5.2282 -2.5715 -1.2643 9 6 5.2299 -2.5839 1.2341 10 6 2.2019 -1.2019 -0.0005 11 7 1.5046 -2.4152 -0.0016 12 6 0.4802 -2.6030 -0.8572 13 8 0.2014 -1.7426 -1.6698 14 7 -0.2350 -3.7444 -0.8121 15 6 0.1590 -4.8397 0.0846 16 6 0.2907 -6.1260 -0.7368 17 6 -1.0128 -6.3756 -1.4989 18 6 -1.2743 -5.2137 -2.4599 19 1 -0.4379 -5.1190 -3.1523 20 6 -2.5405 -5.4761 -3.2337 21 1 -3.3661 -5.9873 -2.7609 22 6 -2.6451 -5.0636 -4.5452 23 7 -3.7804 -5.2110 -5.1923 24 14 -1.1742 -4.2954 -5.4027 25 1 -0.4352 -5.3431 -6.1521 26 1 -1.6423 -3.2489 -6.3467 27 1 -0.2755 -3.6833 -4.3913 28 6 -1.4270 -3.9147 -1.6540 29 1 -0.3633 0.1315 -1.0192 30 1 -0.3633 -0.9485 0.3955 31 1 -0.3634 0.8168 0.6235 32 1 1.6583 2.1312 0.0007 33 1 4.1192 2.1331 -0.0001 34 1 5.3561 0.0052 -0.0024 35 1 3.6439 -3.3310 -0.0183 36 1 5.9335 -1.7404 -1.2607 37 1 5.7764 -3.5136 -1.2696 38 1 4.6007 -2.5116 -2.1536 39 1 4.6037 -2.5330 2.1247 40 1 5.7782 -3.5260 1.2292 41 1 5.9352 -1.7528 1.2377 42 1 1.7583 -3.1210 0.6134 43 1 1.1157 -4.6041 0.5506 44 1 -0.6003 -4.9719 0.8554 45 1 1.1124 -6.0227 -1.4454 46 1 0.4884 -6.9650 -0.0696 47 1 -0.9305 -7.3036 -2.0650 48 1 -1.8379 -6.4543 -0.7911 49 1 -3.8539 -4.9211 -6.1151 50 1 -2.3141 -3.9747 -1.0235 51 1 -1.5169 -3.0688 -2.3354 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596632347.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:28 Heat of formation + Delta-G solvation = -26.534664 kcal Electronic energy + Delta-G solvation = -29899.728985 eV Core-core repulsion = 26183.839679 eV Total energy + Delta-G solvation = -3715.889306 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.16759 -40.37190 -38.54831 -36.59975 -35.88100 -35.14253 -33.64729 -32.53927 -32.12672 -30.12567 -27.97825 -27.84606 -27.07184 -26.20125 -24.17810 -23.40072 -23.05786 -21.46942 -20.68075 -20.27928 -19.60188 -18.91465 -18.26449 -17.31180 -16.68278 -16.52550 -15.99900 -15.81216 -15.50939 -15.30178 -15.00840 -14.97269 -14.84015 -14.64129 -14.39143 -14.28834 -14.20171 -13.96649 -13.77580 -13.19462 -13.10392 -13.06406 -12.97098 -12.81303 -12.74537 -12.64470 -12.29576 -12.02531 -11.99349 -11.80906 -11.75390 -11.63046 -11.55273 -11.34903 -11.12762 -11.03616 -10.82618 -10.73471 -9.62637 -9.45538 -9.03696 -8.36247 -6.37654 0.36888 0.45577 1.22253 1.30611 1.42513 1.59742 2.08065 2.27478 2.82204 2.84734 3.03508 3.66500 3.84164 3.92879 4.05520 4.09921 4.14683 4.22858 4.30122 4.35933 4.38117 4.45045 4.52075 4.55979 4.63426 4.68526 4.70058 4.74395 4.76955 4.82303 4.94627 4.96222 5.00803 5.01553 5.05575 5.06608 5.16071 5.20150 5.28365 5.29198 5.39898 5.44714 5.48907 5.53856 5.58418 5.63049 5.65037 5.68755 5.72629 5.97943 6.15194 6.28667 6.71471 6.90457 7.29183 7.51628 8.80136 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013916 B = 0.003888 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.632352 B = 7199.714943 C = 7711.193708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.098 4.098 3 C -0.123 4.123 4 C -0.123 4.123 5 C -0.110 4.110 6 C -0.094 4.094 7 C -0.056 4.056 8 C -0.140 4.140 9 C -0.136 4.136 10 C 0.138 3.862 11 N -0.675 5.675 12 C 0.696 3.304 13 O -0.615 6.615 14 N -0.625 5.625 15 C 0.109 3.891 16 C -0.127 4.127 17 C -0.101 4.101 18 C 0.002 3.998 19 H 0.023 0.977 20 C -0.508 4.508 21 H 0.046 0.954 22 C 0.026 3.974 23 N -0.941 5.941 24 Si 0.928 3.072 25 H -0.265 1.265 26 H -0.292 1.292 27 H -0.264 1.264 28 C 0.146 3.854 29 H 0.057 0.943 30 H 0.040 0.960 31 H 0.069 0.931 32 H 0.135 0.865 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.028 0.972 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.415 0.585 43 H 0.098 0.902 44 H 0.087 0.913 45 H 0.054 0.946 46 H 0.107 0.893 47 H 0.053 0.947 48 H 0.058 0.942 49 H 0.266 0.734 50 H 0.061 0.939 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.529 6.788 18.026 28.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.100 4.100 3 C -0.142 4.142 4 C -0.142 4.142 5 C -0.128 4.128 6 C -0.097 4.097 7 C -0.074 4.074 8 C -0.197 4.197 9 C -0.193 4.193 10 C 0.044 3.956 11 N -0.328 5.328 12 C 0.399 3.601 13 O -0.495 6.495 14 N -0.361 5.361 15 C -0.013 4.013 16 C -0.165 4.165 17 C -0.139 4.139 18 C -0.018 4.018 19 H 0.041 0.959 20 C -0.547 4.547 21 H 0.064 0.936 22 C -0.172 4.172 23 N -0.581 5.581 24 Si 0.754 3.246 25 H -0.190 1.190 26 H -0.218 1.218 27 H -0.188 1.188 28 C 0.022 3.978 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.153 0.847 33 H 0.168 0.832 34 H 0.167 0.833 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.047 0.953 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.256 0.744 43 H 0.116 0.884 44 H 0.105 0.895 45 H 0.072 0.928 46 H 0.125 0.875 47 H 0.072 0.928 48 H 0.077 0.923 49 H 0.075 0.925 50 H 0.079 0.921 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 21.182 7.346 17.286 28.310 hybrid contribution -0.409 0.026 -1.029 1.107 sum 20.773 7.372 16.258 27.389 Atomic orbital electron populations 1.20720 0.91817 1.00929 1.01332 1.20014 0.96152 0.93050 1.00821 1.21109 0.95160 0.96849 1.01035 1.21408 0.93557 0.99264 0.99942 1.21078 1.00820 0.90793 1.00086 1.19997 0.90788 0.97147 1.01751 1.20084 0.96941 0.93158 0.97251 1.21816 0.99086 1.03033 0.95797 1.21819 0.99154 1.02969 0.95396 1.17387 0.90572 0.84522 1.03092 1.42546 1.33642 1.16855 1.39754 1.16019 0.80015 0.82582 0.81518 1.90910 1.71800 1.45051 1.41724 1.47629 1.29084 1.14874 1.44522 1.21924 1.01416 0.85961 0.91993 1.21942 0.97324 0.97810 0.99422 1.21459 0.97219 0.97677 0.97526 1.19582 0.94991 0.92720 0.94493 0.95904 1.21227 1.00544 1.36499 0.96395 0.93599 1.25719 0.97451 0.95588 0.98481 1.70015 1.26555 1.49590 1.11909 0.86012 0.81118 0.78751 0.78692 1.19026 1.21828 1.18819 1.21844 0.84705 0.99020 0.92196 0.92401 0.94060 0.91192 0.84697 0.83206 0.83327 0.91470 0.91165 0.90971 0.95287 0.92510 0.91088 0.91474 0.74425 0.88419 0.89498 0.92756 0.87470 0.92815 0.92291 0.92512 0.92086 0.93713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.89 8.08 71.24 0.58 -2.32 16 2 C -0.10 -2.85 5.48 -19.74 -0.11 -2.96 16 3 C -0.12 -2.88 9.72 22.25 0.22 -2.67 16 4 C -0.12 -2.31 10.04 22.29 0.22 -2.09 16 5 C -0.11 -2.02 8.71 22.25 0.19 -1.82 16 6 C -0.09 -2.07 4.80 -19.74 -0.09 -2.17 16 7 C -0.06 -0.96 3.03 -11.54 -0.03 -1.00 16 8 C -0.14 -2.42 9.01 71.98 0.65 -1.77 16 9 C -0.14 -1.59 9.01 71.98 0.65 -0.94 16 10 C 0.14 3.83 5.97 38.14 0.23 4.06 16 11 N -0.68 -18.61 4.11 -317.18 -1.30 -19.92 16 12 C 0.70 25.49 6.38 179.05 1.14 26.63 16 13 O -0.62 -28.22 12.02 -3.99 -0.05 -28.27 16 14 N -0.63 -21.81 2.97 -836.06 -2.48 -24.29 16 15 C 0.11 2.58 6.38 86.36 0.55 3.14 16 16 C -0.13 -3.22 6.08 30.67 0.19 -3.03 16 17 C -0.10 -3.60 5.15 30.62 0.16 -3.44 16 18 C 0.00 0.09 1.89 -11.32 -0.02 0.07 16 19 H 0.02 1.12 5.09 -2.39 -0.01 1.11 16 20 C -0.51 -28.63 8.87 25.60 0.23 -28.40 16 21 H 0.05 2.80 8.06 -2.91 -0.02 2.77 16 22 C 0.03 1.54 5.47 84.66 0.46 2.00 16 23 N -0.94 -59.35 13.96 21.45 0.30 -59.05 16 24 Si 0.93 47.95 27.29 68.60 1.87 49.83 16 25 H -0.27 -12.95 7.11 99.48 0.71 -12.25 16 26 H -0.29 -15.15 7.11 99.48 0.71 -14.44 16 27 H -0.26 -13.90 6.39 99.48 0.64 -13.26 16 28 C 0.15 6.37 5.74 86.51 0.50 6.86 16 29 H 0.06 2.21 6.75 -2.39 -0.02 2.19 16 30 H 0.04 1.38 5.96 -2.39 -0.01 1.37 16 31 H 0.07 1.82 8.13 -2.39 -0.02 1.80 16 32 H 0.14 2.66 8.06 -2.91 -0.02 2.63 16 33 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 34 H 0.15 1.88 7.10 -2.91 -0.02 1.86 16 35 H 0.07 1.23 6.36 -2.39 -0.02 1.21 16 36 H 0.07 1.00 7.39 -2.39 -0.02 0.99 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.03 0.65 8.14 -2.38 -0.02 0.63 16 39 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.07 0.67 7.39 -2.39 -0.02 0.66 16 42 H 0.41 8.48 5.36 -92.71 -0.50 7.98 16 43 H 0.10 1.62 5.66 -2.39 -0.01 1.61 16 44 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.05 1.47 8.14 -2.39 -0.02 1.46 16 46 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 48 H 0.06 2.03 8.14 -2.39 -0.02 2.02 16 49 H 0.27 15.83 8.31 -92.70 -0.77 15.06 16 50 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 51 H 0.04 2.29 7.00 -2.39 -0.02 2.27 16 Total: -1.00 -75.96 386.84 4.39 -71.57 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.35 Total: 19.97 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: 5.70 Total: -9.83 kcal Atomic # 7 Polarization: -99.77 SS G_CDS: -3.48 Total: -103.26 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -0.05 Total: -28.27 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 1.87 Total: 49.83 kcal Total: -75.96 4.39 -71.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596632347.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.034 kcal (2) G-P(sol) polarization free energy of solvation -75.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds