Wall clock time and date at job start Tue Mar 31 2020 15:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38133 * 120.03071 * 2 1 4 4 C 1.38262 * 120.06824 * 179.97438 * 3 2 1 5 5 C 1.38297 * 120.14232 * 359.97438 * 4 3 2 6 6 C 1.38099 * 120.06987 * 359.97438 * 5 4 3 7 7 C 1.50698 * 120.03916 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47278 * 300.02619 * 7 6 5 9 9 C 1.53005 * 109.46757 * 60.02324 * 7 6 5 10 10 C 1.38843 * 120.03899 * 179.97438 * 2 1 3 11 11 N 1.39945 * 120.06703 * 0.27542 * 10 2 1 12 12 C 1.34770 * 120.00157 * 302.10309 * 11 10 2 13 13 O 1.21584 * 120.00226 * 5.62161 * 12 11 10 14 14 N 1.34783 * 119.99892 * 185.62469 * 12 11 10 15 15 C 1.46925 * 120.62905 * 355.02109 * 14 12 11 16 16 C 1.53192 * 108.77626 * 126.36942 * 15 14 12 17 17 C 1.53039 * 109.31315 * 54.63124 * 16 15 14 18 18 C 1.53045 * 109.53983 * 298.63737 * 17 16 15 19 19 H 1.08998 * 109.49156 * 301.38007 * 18 17 16 20 20 C 1.50695 * 109.49955 * 181.32055 * 18 17 16 21 21 H 1.08000 * 120.00154 * 359.97438 * 20 18 17 22 22 C 1.37871 * 120.00102 * 180.02562 * 20 18 17 23 23 N 1.31512 * 120.00125 * 359.97438 * 22 20 18 24 24 Si 1.86803 * 120.00080 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47157 * 59.99929 * 24 22 20 26 26 H 1.48504 * 109.46923 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.46937 * 299.99421 * 24 22 20 28 28 C 1.46926 * 120.63035 * 174.73665 * 14 12 11 29 29 H 1.08995 * 109.47476 * 277.14440 * 1 2 3 30 30 H 1.09001 * 109.47092 * 37.14461 * 1 2 3 31 31 H 1.08999 * 109.46828 * 157.13826 * 1 2 3 32 32 H 1.07997 * 119.97187 * 0.02562 * 3 2 1 33 33 H 1.08003 * 119.92945 * 179.97438 * 4 3 2 34 34 H 1.08002 * 119.96709 * 179.97438 * 5 4 3 35 35 H 1.08993 * 109.47053 * 180.02562 * 7 6 5 36 36 H 1.08998 * 109.47080 * 59.99257 * 8 7 6 37 37 H 1.08995 * 109.47401 * 179.97438 * 8 7 6 38 38 H 1.09002 * 109.46685 * 299.99756 * 8 7 6 39 39 H 1.08994 * 109.47172 * 60.00143 * 9 7 6 40 40 H 1.09003 * 109.46900 * 180.02562 * 9 7 6 41 41 H 1.09005 * 109.46859 * 299.99932 * 9 7 6 42 42 H 0.97002 * 119.99787 * 122.09880 * 11 10 2 43 43 H 1.09008 * 109.58316 * 246.15550 * 15 14 12 44 44 H 1.08995 * 109.58708 * 6.43559 * 15 14 12 45 45 H 1.09000 * 109.49694 * 174.58310 * 16 15 14 46 46 H 1.08997 * 109.49330 * 294.67932 * 16 15 14 47 47 H 1.09000 * 109.46090 * 58.65450 * 17 16 15 48 48 H 1.08998 * 109.45865 * 178.62650 * 17 16 15 49 49 H 0.97005 * 120.00369 * 179.97438 * 23 22 20 50 50 H 1.09010 * 109.58661 * 353.42123 * 28 14 12 51 51 H 1.09003 * 109.58516 * 113.84044 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1959 0.0000 4 6 3.5810 1.1968 0.0005 5 6 4.2762 0.0013 0.0016 6 6 3.5909 -1.1977 0.0027 7 6 4.3492 -2.5000 0.0033 8 6 5.2291 -2.5784 -1.2459 9 6 5.2292 -2.5771 1.2526 10 6 2.2021 -1.2019 0.0005 11 7 1.5046 -2.4152 -0.0047 12 6 0.6269 -2.6922 0.9797 13 8 0.3644 -1.8489 1.8153 14 7 0.0401 -3.9042 1.0381 15 6 0.2626 -4.8955 -0.0233 16 6 0.7462 -6.2013 0.6151 17 6 -0.2538 -6.6415 1.6867 18 6 -0.3379 -5.5723 2.7784 19 1 0.6489 -5.4202 3.2155 20 6 -1.2984 -6.0213 3.8493 21 1 -1.7995 -6.9739 3.7604 22 6 -1.5384 -5.2155 4.9420 23 7 -0.9287 -4.0553 5.0501 24 14 -2.7296 -5.7718 6.2691 25 1 -2.2506 -7.0463 6.8616 26 1 -2.8107 -4.7338 7.3281 27 1 -4.0741 -5.9773 5.6729 28 6 -0.8294 -4.2614 2.1673 29 1 -0.3634 0.1278 1.0196 30 1 -0.3633 0.8192 -0.6205 31 1 -0.3633 -0.9469 -0.3993 32 1 1.6584 2.1312 0.0004 33 1 4.1192 2.1332 0.0001 34 1 5.3562 0.0053 0.0016 35 1 3.6440 -3.3310 0.0036 36 1 5.9343 -1.7473 -1.2464 37 1 5.7779 -3.5201 -1.2453 38 1 4.6022 -2.5234 -2.1359 39 1 4.6023 -2.5213 2.1425 40 1 5.7780 -3.5189 1.2528 41 1 5.9344 -1.7460 1.2521 42 1 1.6529 -3.0567 -0.7170 43 1 -0.6703 -5.0738 -0.5582 44 1 1.0166 -4.5245 -0.7175 45 1 0.8231 -6.9738 -0.1501 46 1 1.7230 -6.0428 1.0721 47 1 -1.2360 -6.7758 1.2336 48 1 0.0755 -7.5833 2.1257 49 1 -1.0978 -3.4881 5.8187 50 1 -0.7938 -3.4732 2.9195 51 1 -1.8532 -4.3869 1.8148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596632348.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:32 Heat of formation + Delta-G solvation = -12.921910 kcal Electronic energy + Delta-G solvation = -29936.941013 eV Core-core repulsion = 26221.642000 eV Total energy + Delta-G solvation = -3715.299013 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.66105 -38.99222 -36.85930 -35.60146 -34.36139 -33.30110 -31.92590 -31.34371 -29.85170 -28.89584 -27.16528 -26.64007 -25.08259 -24.54664 -23.10992 -21.90599 -21.71951 -20.03177 -19.41461 -18.88408 -17.93372 -17.01580 -16.18082 -15.98573 -15.37947 -14.77693 -14.48886 -14.43476 -14.01809 -13.88806 -13.79078 -13.71442 -13.45686 -13.25445 -13.07466 -12.69965 -12.55573 -12.34243 -12.27548 -12.09271 -11.98646 -11.91174 -11.62354 -11.27044 -11.09397 -10.99611 -10.91246 -10.72464 -10.62693 -10.52525 -10.43078 -10.23334 -9.90411 -9.59773 -9.34231 -9.10429 -8.97283 -8.42549 -8.40906 -8.12922 -7.63761 -5.98281 -4.07539 1.44566 1.52644 3.15078 3.33251 3.38903 3.39969 3.72696 3.91367 4.30883 4.45022 4.64749 4.79932 5.08829 5.14359 5.18755 5.20525 5.31616 5.34157 5.40561 5.46029 5.54989 5.58088 5.61085 5.70220 5.72765 5.79507 5.90304 5.95403 5.99969 6.03464 6.11083 6.12935 6.18258 6.28239 6.29449 6.49950 6.56390 6.59199 6.59623 6.63984 6.73320 6.81083 6.84476 6.97188 7.03382 7.27531 7.34987 7.45158 7.72935 7.91800 8.05607 8.40583 8.50431 8.95754 9.20693 9.58166 11.06708 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014070 B = 0.003704 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.518741 B = 7556.976426 C = 8221.843211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.066 4.066 3 C -0.118 4.118 4 C -0.125 4.125 5 C -0.114 4.114 6 C -0.085 4.085 7 C -0.056 4.056 8 C -0.141 4.141 9 C -0.141 4.141 10 C 0.168 3.832 11 N -0.702 5.702 12 C 0.701 3.299 13 O -0.565 6.565 14 N -0.619 5.619 15 C 0.114 3.886 16 C -0.133 4.133 17 C -0.109 4.109 18 C 0.040 3.960 19 H 0.028 0.972 20 C -0.523 4.523 21 H 0.057 0.943 22 C 0.064 3.936 23 N -0.879 5.879 24 Si 0.892 3.108 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.277 1.277 28 C 0.130 3.870 29 H 0.086 0.914 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.077 0.923 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.397 0.603 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.060 0.940 47 H 0.049 0.951 48 H 0.051 0.949 49 H 0.264 0.736 50 H 0.124 0.876 51 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.217 5.270 -15.281 19.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.068 4.068 3 C -0.137 4.137 4 C -0.144 4.144 5 C -0.133 4.133 6 C -0.088 4.088 7 C -0.075 4.075 8 C -0.199 4.199 9 C -0.198 4.198 10 C 0.074 3.926 11 N -0.357 5.357 12 C 0.403 3.597 13 O -0.440 6.440 14 N -0.356 5.356 15 C -0.010 4.010 16 C -0.171 4.171 17 C -0.147 4.147 18 C 0.020 3.980 19 H 0.046 0.954 20 C -0.561 4.561 21 H 0.076 0.924 22 C -0.139 4.139 23 N -0.516 5.516 24 Si 0.720 3.280 25 H -0.203 1.203 26 H -0.213 1.213 27 H -0.202 1.202 28 C 0.009 3.991 29 H 0.105 0.895 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.236 0.764 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.068 0.932 48 H 0.070 0.930 49 H 0.074 0.926 50 H 0.142 0.858 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 9.971 5.988 -14.488 18.579 hybrid contribution -0.534 -0.656 0.414 0.941 sum 9.438 5.333 -14.074 17.765 Atomic orbital electron populations 1.20763 0.90743 1.01289 1.03128 1.19965 0.96597 0.91932 0.98351 1.20852 0.94108 0.97068 1.01639 1.21015 0.94164 0.97728 1.01479 1.20703 0.99358 0.91441 1.01801 1.19841 0.92009 0.95427 1.01496 1.20038 0.96865 0.94736 0.95827 1.21853 0.99360 1.01724 0.96919 1.21813 0.99244 1.01416 0.97377 1.17044 0.89318 0.84943 1.01323 1.42832 1.45146 1.19136 1.28538 1.15904 0.79067 0.83252 0.81449 1.90939 1.65632 1.46237 1.41201 1.47808 1.50791 1.11512 1.25484 1.21524 0.99747 0.90033 0.89729 1.21944 1.00358 0.95821 0.99022 1.21610 0.96980 0.99895 0.96229 1.18904 0.97575 0.89781 0.91695 0.95414 1.21023 1.26208 1.04261 1.04621 0.92436 1.25044 0.95930 0.94959 0.97994 1.69875 1.41762 1.10110 1.29870 0.86665 0.81569 0.78285 0.81525 1.20310 1.21261 1.20239 1.22128 0.89350 1.02182 0.85396 0.89540 0.92867 0.92335 0.86157 0.86340 0.86225 0.90480 0.92513 0.92459 0.92772 0.92208 0.92504 0.92656 0.76411 0.91960 0.92351 0.92290 0.92166 0.93181 0.93044 0.92586 0.85848 0.94221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.62 8.25 36.01 0.30 -1.32 16 2 C -0.07 -1.03 5.49 -104.44 -0.57 -1.60 16 3 C -0.12 -1.57 9.72 -39.61 -0.39 -1.95 16 4 C -0.13 -1.49 10.04 -39.55 -0.40 -1.89 16 5 C -0.11 -1.38 8.71 -39.61 -0.35 -1.73 16 6 C -0.09 -1.16 4.80 -104.43 -0.50 -1.66 16 7 C -0.06 -0.66 3.05 -91.77 -0.28 -0.94 16 8 C -0.14 -1.29 9.01 37.16 0.33 -0.96 16 9 C -0.14 -1.68 9.01 37.16 0.33 -1.34 16 10 C 0.17 2.62 5.78 -83.69 -0.48 2.14 16 11 N -0.70 -11.05 3.59 -14.23 -0.05 -11.10 16 12 C 0.70 14.11 6.85 -86.92 -0.60 13.51 16 13 O -0.56 -13.72 12.86 5.29 0.07 -13.66 16 14 N -0.62 -12.24 2.98 -178.76 -0.53 -12.77 16 15 C 0.11 1.72 6.43 -3.71 -0.02 1.69 16 16 C -0.13 -2.08 6.08 -26.61 -0.16 -2.24 16 17 C -0.11 -2.14 5.11 -26.69 -0.14 -2.27 16 18 C 0.04 0.97 2.24 -91.88 -0.21 0.77 16 19 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 20 C -0.52 -14.08 8.56 -34.44 -0.29 -14.38 16 21 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 22 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 23 N -0.88 -25.67 11.39 55.43 0.63 -25.04 16 24 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 C 0.13 3.12 5.36 -3.94 -0.02 3.10 16 29 H 0.09 1.59 7.11 -51.93 -0.37 1.22 16 30 H 0.05 0.68 8.13 -51.93 -0.42 0.26 16 31 H 0.06 0.97 6.42 -51.93 -0.33 0.63 16 32 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 33 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 34 H 0.12 1.18 7.10 -52.49 -0.37 0.81 16 35 H 0.08 0.98 6.61 -51.93 -0.34 0.64 16 36 H 0.06 0.48 7.39 -51.93 -0.38 0.09 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.58 7.39 -51.93 -0.38 0.20 16 42 H 0.40 5.11 5.82 -40.82 -0.24 4.88 16 43 H 0.06 0.88 8.14 -51.92 -0.42 0.45 16 44 H 0.06 0.69 5.57 -51.93 -0.29 0.41 16 45 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 49 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 50 H 0.12 3.50 5.15 -51.92 -0.27 3.23 16 51 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 389.90 15.07 5.88 5.88 Total: -1.00 -31.31 389.90 -11.00 -42.31 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -8.44 Total: 7.53 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -3.53 Total: -9.40 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: 0.05 Total: -48.91 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: 0.07 Total: -13.66 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.31 -11.00 -42.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596632348.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.388 kcal (2) G-P(sol) polarization free energy of solvation -31.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds