Wall clock time and date at job start Tue Mar 31 2020 15:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38133 * 120.03071 * 2 1 4 4 C 1.38262 * 120.06824 * 179.97438 * 3 2 1 5 5 C 1.38297 * 120.14232 * 359.97438 * 4 3 2 6 6 C 1.38099 * 120.06987 * 359.97438 * 5 4 3 7 7 C 1.50698 * 120.03916 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47278 * 300.02619 * 7 6 5 9 9 C 1.53005 * 109.46757 * 60.02324 * 7 6 5 10 10 C 1.38843 * 120.03899 * 179.97438 * 2 1 3 11 11 N 1.39945 * 120.06703 * 0.27542 * 10 2 1 12 12 C 1.34770 * 120.00157 * 302.10309 * 11 10 2 13 13 O 1.21584 * 120.00226 * 5.62161 * 12 11 10 14 14 N 1.34783 * 119.99892 * 185.62469 * 12 11 10 15 15 C 1.46925 * 120.62905 * 355.02109 * 14 12 11 16 16 C 1.53192 * 108.77626 * 126.36942 * 15 14 12 17 17 C 1.53039 * 109.31315 * 54.63124 * 16 15 14 18 18 C 1.53045 * 109.53983 * 298.63737 * 17 16 15 19 19 H 1.08998 * 109.49156 * 301.38007 * 18 17 16 20 20 C 1.50695 * 109.49955 * 181.32055 * 18 17 16 21 21 H 1.08000 * 120.00154 * 359.97438 * 20 18 17 22 22 C 1.37871 * 120.00102 * 180.02562 * 20 18 17 23 23 N 1.31512 * 120.00125 * 359.97438 * 22 20 18 24 24 Si 1.86803 * 120.00080 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47157 * 59.99929 * 24 22 20 26 26 H 1.48504 * 109.46923 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.46937 * 299.99421 * 24 22 20 28 28 C 1.46926 * 120.63035 * 174.73665 * 14 12 11 29 29 H 1.08995 * 109.47476 * 277.14440 * 1 2 3 30 30 H 1.09001 * 109.47092 * 37.14461 * 1 2 3 31 31 H 1.08999 * 109.46828 * 157.13826 * 1 2 3 32 32 H 1.07997 * 119.97187 * 0.02562 * 3 2 1 33 33 H 1.08003 * 119.92945 * 179.97438 * 4 3 2 34 34 H 1.08002 * 119.96709 * 179.97438 * 5 4 3 35 35 H 1.08993 * 109.47053 * 180.02562 * 7 6 5 36 36 H 1.08998 * 109.47080 * 59.99257 * 8 7 6 37 37 H 1.08995 * 109.47401 * 179.97438 * 8 7 6 38 38 H 1.09002 * 109.46685 * 299.99756 * 8 7 6 39 39 H 1.08994 * 109.47172 * 60.00143 * 9 7 6 40 40 H 1.09003 * 109.46900 * 180.02562 * 9 7 6 41 41 H 1.09005 * 109.46859 * 299.99932 * 9 7 6 42 42 H 0.97002 * 119.99787 * 122.09880 * 11 10 2 43 43 H 1.09008 * 109.58316 * 246.15550 * 15 14 12 44 44 H 1.08995 * 109.58708 * 6.43559 * 15 14 12 45 45 H 1.09000 * 109.49694 * 174.58310 * 16 15 14 46 46 H 1.08997 * 109.49330 * 294.67932 * 16 15 14 47 47 H 1.09000 * 109.46090 * 58.65450 * 17 16 15 48 48 H 1.08998 * 109.45865 * 178.62650 * 17 16 15 49 49 H 0.97005 * 120.00369 * 179.97438 * 23 22 20 50 50 H 1.09010 * 109.58661 * 353.42123 * 28 14 12 51 51 H 1.09003 * 109.58516 * 113.84044 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1959 0.0000 4 6 3.5810 1.1968 0.0005 5 6 4.2762 0.0013 0.0016 6 6 3.5909 -1.1977 0.0027 7 6 4.3492 -2.5000 0.0033 8 6 5.2291 -2.5784 -1.2459 9 6 5.2292 -2.5771 1.2526 10 6 2.2021 -1.2019 0.0005 11 7 1.5046 -2.4152 -0.0047 12 6 0.6269 -2.6922 0.9797 13 8 0.3644 -1.8489 1.8153 14 7 0.0401 -3.9042 1.0381 15 6 0.2626 -4.8955 -0.0233 16 6 0.7462 -6.2013 0.6151 17 6 -0.2538 -6.6415 1.6867 18 6 -0.3379 -5.5723 2.7784 19 1 0.6489 -5.4202 3.2155 20 6 -1.2984 -6.0213 3.8493 21 1 -1.7995 -6.9739 3.7604 22 6 -1.5384 -5.2155 4.9420 23 7 -0.9287 -4.0553 5.0501 24 14 -2.7296 -5.7718 6.2691 25 1 -2.2506 -7.0463 6.8616 26 1 -2.8107 -4.7338 7.3281 27 1 -4.0741 -5.9773 5.6729 28 6 -0.8294 -4.2614 2.1673 29 1 -0.3634 0.1278 1.0196 30 1 -0.3633 0.8192 -0.6205 31 1 -0.3633 -0.9469 -0.3993 32 1 1.6584 2.1312 0.0004 33 1 4.1192 2.1332 0.0001 34 1 5.3562 0.0053 0.0016 35 1 3.6440 -3.3310 0.0036 36 1 5.9343 -1.7473 -1.2464 37 1 5.7779 -3.5201 -1.2453 38 1 4.6022 -2.5234 -2.1359 39 1 4.6023 -2.5213 2.1425 40 1 5.7780 -3.5189 1.2528 41 1 5.9344 -1.7460 1.2521 42 1 1.6529 -3.0567 -0.7170 43 1 -0.6703 -5.0738 -0.5582 44 1 1.0166 -4.5245 -0.7175 45 1 0.8231 -6.9738 -0.1501 46 1 1.7230 -6.0428 1.0721 47 1 -1.2360 -6.7758 1.2336 48 1 0.0755 -7.5833 2.1257 49 1 -1.0978 -3.4881 5.8187 50 1 -0.7938 -3.4732 2.9195 51 1 -1.8532 -4.3869 1.8148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596632348.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:31 Heat of formation + Delta-G solvation = -29.154715 kcal Electronic energy + Delta-G solvation = -29937.644920 eV Core-core repulsion = 26221.642000 eV Total energy + Delta-G solvation = -3716.002920 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.98110 -40.30227 -38.42607 -36.57094 -35.82183 -35.12548 -33.51039 -32.53166 -31.57271 -30.05404 -27.98095 -27.81153 -27.01165 -26.09992 -24.11717 -23.48628 -22.99775 -21.50862 -20.58683 -20.25912 -19.38064 -18.51471 -18.00958 -17.19328 -16.68949 -16.49486 -15.94098 -15.81599 -15.35465 -15.22616 -14.99712 -14.83833 -14.72068 -14.49864 -14.27760 -14.25993 -14.11776 -13.81787 -13.57493 -13.19311 -13.10214 -12.94809 -12.85820 -12.72749 -12.63819 -12.36037 -12.29365 -12.24944 -12.00599 -11.88009 -11.72187 -11.64503 -11.53805 -11.21299 -10.96715 -10.90363 -10.68178 -10.51041 -9.51972 -9.44523 -9.06894 -8.10485 -6.28003 0.38765 0.47676 1.40407 1.41869 1.50284 1.72320 2.22675 2.41616 2.83022 2.96884 3.18931 3.69197 3.86562 3.98689 4.08262 4.13380 4.24525 4.25409 4.30519 4.39091 4.40816 4.56254 4.58301 4.65511 4.69517 4.73309 4.76790 4.79774 4.81508 4.83991 4.96077 5.01509 5.06655 5.09546 5.16509 5.23734 5.25947 5.28518 5.30503 5.33971 5.40396 5.53756 5.54996 5.58721 5.62793 5.68700 5.73225 5.88526 5.95762 6.12360 6.19760 6.35187 6.84915 7.04856 7.42216 7.66482 8.92366 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014070 B = 0.003704 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.518741 B = 7556.976426 C = 8221.843211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.093 4.093 3 C -0.126 4.126 4 C -0.118 4.118 5 C -0.114 4.114 6 C -0.090 4.090 7 C -0.056 4.056 8 C -0.133 4.133 9 C -0.139 4.139 10 C 0.134 3.866 11 N -0.680 5.680 12 C 0.698 3.302 13 O -0.616 6.616 14 N -0.624 5.624 15 C 0.108 3.892 16 C -0.124 4.124 17 C -0.104 4.104 18 C 0.039 3.961 19 H -0.016 1.016 20 C -0.537 4.537 21 H 0.063 0.937 22 C 0.011 3.989 23 N -0.915 5.915 24 Si 0.956 3.044 25 H -0.268 1.268 26 H -0.290 1.290 27 H -0.266 1.266 28 C 0.146 3.854 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.042 0.958 32 H 0.138 0.862 33 H 0.153 0.847 34 H 0.149 0.851 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.021 0.979 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.412 0.588 43 H 0.081 0.919 44 H 0.095 0.905 45 H 0.105 0.895 46 H 0.049 0.951 47 H 0.057 0.943 48 H 0.052 0.948 49 H 0.259 0.741 50 H 0.076 0.924 51 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.988 4.741 -17.850 22.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 C -0.145 4.145 4 C -0.136 4.136 5 C -0.132 4.132 6 C -0.092 4.092 7 C -0.075 4.075 8 C -0.191 4.191 9 C -0.197 4.197 10 C 0.040 3.960 11 N -0.335 5.335 12 C 0.400 3.600 13 O -0.495 6.495 14 N -0.360 5.360 15 C -0.014 4.014 16 C -0.162 4.162 17 C -0.142 4.142 18 C 0.020 3.980 19 H 0.002 0.998 20 C -0.575 4.575 21 H 0.081 0.919 22 C -0.189 4.189 23 N -0.553 5.553 24 Si 0.782 3.218 25 H -0.193 1.193 26 H -0.216 1.216 27 H -0.191 1.191 28 C 0.024 3.976 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.061 0.939 32 H 0.156 0.844 33 H 0.170 0.830 34 H 0.166 0.834 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.041 0.959 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.252 0.748 43 H 0.099 0.901 44 H 0.114 0.886 45 H 0.123 0.877 46 H 0.068 0.932 47 H 0.076 0.924 48 H 0.070 0.930 49 H 0.068 0.932 50 H 0.094 0.906 51 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 11.772 5.420 -17.126 21.476 hybrid contribution -1.016 -0.439 1.200 1.633 sum 10.756 4.981 -15.926 19.852 Atomic orbital electron populations 1.20598 0.91704 1.01438 1.01206 1.20136 0.96312 0.93134 0.99888 1.21138 0.95146 0.96904 1.01292 1.21436 0.93634 0.99192 0.99379 1.21088 1.00828 0.90834 1.00496 1.20109 0.91222 0.97021 1.00819 1.20075 0.96908 0.93349 0.97161 1.21798 0.99081 1.02932 0.95249 1.21805 0.99035 1.02975 0.95837 1.17375 0.90406 0.84620 1.03549 1.42455 1.43770 1.19715 1.27550 1.16074 0.79408 0.82786 0.81718 1.90906 1.67283 1.47865 1.43419 1.47673 1.50247 1.12560 1.25540 1.21882 1.01950 0.88734 0.88843 1.21893 0.98330 0.97176 0.98820 1.21496 0.98819 0.98018 0.95833 1.18828 0.94509 0.91737 0.92944 0.99805 1.21489 1.26295 1.04307 1.05453 0.91904 1.25887 0.97632 0.94892 1.00448 1.70090 1.43564 1.11403 1.30258 0.85637 0.79701 0.77882 0.78626 1.19258 1.21595 1.19128 1.21490 0.89802 1.00416 0.85927 0.93186 0.90273 0.93864 0.84403 0.82982 0.83361 0.91857 0.91321 0.91231 0.92346 0.95920 0.91131 0.90909 0.74753 0.90090 0.88650 0.87653 0.93194 0.92380 0.92961 0.93237 0.90611 0.94912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.07 8.25 71.24 0.59 -2.49 16 2 C -0.09 -2.92 5.49 -19.74 -0.11 -3.03 16 3 C -0.13 -3.21 9.72 22.25 0.22 -2.99 16 4 C -0.12 -2.48 10.04 22.29 0.22 -2.26 16 5 C -0.11 -2.45 8.71 22.25 0.19 -2.25 16 6 C -0.09 -2.31 4.80 -19.74 -0.09 -2.41 16 7 C -0.06 -1.23 3.05 -11.54 -0.04 -1.27 16 8 C -0.13 -1.99 9.01 71.98 0.65 -1.35 16 9 C -0.14 -3.14 9.01 71.98 0.65 -2.49 16 10 C 0.13 4.20 5.78 38.15 0.22 4.42 16 11 N -0.68 -21.68 3.59 -317.19 -1.14 -22.82 16 12 C 0.70 29.46 6.85 179.05 1.23 30.68 16 13 O -0.62 -32.29 12.86 -3.98 -0.05 -32.34 16 14 N -0.62 -25.43 2.98 -837.74 -2.50 -27.92 16 15 C 0.11 3.06 6.43 86.36 0.56 3.62 16 16 C -0.12 -3.60 6.08 30.67 0.19 -3.41 16 17 C -0.10 -3.99 5.11 30.62 0.16 -3.83 16 18 C 0.04 2.00 2.24 -11.61 -0.03 1.97 16 19 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 20 C -0.54 -29.85 8.56 25.60 0.22 -29.63 16 21 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 22 C 0.01 0.62 5.30 84.65 0.45 1.07 16 23 N -0.91 -56.66 11.39 21.44 0.24 -56.41 16 24 Si 0.96 44.78 29.54 68.60 2.03 46.81 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 26 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 27 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 28 C 0.15 7.44 5.36 86.22 0.46 7.90 16 29 H 0.05 2.00 7.11 -2.39 -0.02 1.99 16 30 H 0.08 2.08 8.13 -2.39 -0.02 2.06 16 31 H 0.04 1.50 6.42 -2.39 -0.02 1.49 16 32 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 33 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 34 H 0.15 2.30 7.10 -2.91 -0.02 2.28 16 35 H 0.06 1.54 6.61 -2.39 -0.02 1.52 16 36 H 0.07 0.87 7.39 -2.39 -0.02 0.86 16 37 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.02 0.65 8.14 -2.39 -0.02 0.64 16 40 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.07 1.35 7.39 -2.38 -0.02 1.33 16 42 H 0.41 10.17 5.82 -92.71 -0.54 9.63 16 43 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 44 H 0.10 2.00 5.57 -2.39 -0.01 1.98 16 45 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 46 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16 47 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 48 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 49 H 0.26 15.54 8.31 -92.70 -0.77 14.77 16 50 H 0.08 4.64 5.15 -2.38 -0.01 4.63 16 51 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -75.61 389.90 4.69 -70.92 By element: Atomic # 1 Polarization: 29.14 SS G_CDS: 0.38 Total: 29.52 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: 5.73 Total: -7.75 kcal Atomic # 7 Polarization: -103.76 SS G_CDS: -3.39 Total: -107.16 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -0.05 Total: -32.34 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -75.61 4.69 -70.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596632348.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.763 kcal (2) G-P(sol) polarization free energy of solvation -75.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds