Wall clock time and date at job start Tue Mar 31 2020 16:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47789 * 2 1 4 4 C 1.53003 * 109.46979 * 119.99612 * 2 1 3 5 5 N 1.46898 * 109.47228 * 174.99562 * 4 2 1 6 6 C 1.46851 * 110.99992 * 45.79302 * 5 4 2 7 7 C 1.53033 * 109.52218 * 185.84038 * 6 5 4 8 8 C 1.53119 * 109.28117 * 300.81321 * 7 6 5 9 9 C 1.52997 * 109.57560 * 177.59011 * 8 7 6 10 10 C 1.53123 * 109.15624 * 57.65893 * 8 7 6 11 11 C 1.46846 * 111.00343 * 169.99787 * 5 4 2 12 12 N 1.46498 * 109.46923 * 239.99129 * 2 1 3 13 13 C 1.34774 * 119.99669 * 85.00526 * 12 2 1 14 14 O 1.21550 * 120.00221 * 359.97438 * 13 12 2 15 15 C 1.47886 * 120.00168 * 180.27493 * 13 12 2 16 16 C 1.39920 * 120.02326 * 359.44637 * 15 13 12 17 17 C 1.38327 * 120.36048 * 179.71545 * 16 15 13 18 18 C 1.37753 * 120.40898 * 0.56504 * 17 16 15 19 19 C 1.40746 * 120.04035 * 359.71592 * 18 17 16 20 20 C 1.41437 * 120.17923 * 180.02562 * 19 18 17 21 21 H 1.08009 * 119.99845 * 334.92899 * 20 19 18 22 22 C 1.39936 * 120.00340 * 154.93332 * 20 19 18 23 23 N 1.30823 * 119.99598 * 342.58086 * 22 20 19 24 24 Si 1.86795 * 120.00306 * 162.58558 * 22 20 19 25 25 H 1.48494 * 109.47345 * 89.99634 * 24 22 20 26 26 H 1.48501 * 109.47433 * 209.99919 * 24 22 20 27 27 H 1.48504 * 109.47118 * 329.99571 * 24 22 20 28 28 C 1.38993 * 120.02928 * 179.72332 * 15 13 12 29 29 H 1.09005 * 109.46925 * 300.00948 * 1 2 3 30 30 H 1.08998 * 109.47064 * 59.99839 * 1 2 3 31 31 H 1.08994 * 109.47555 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47295 * 294.99662 * 4 2 1 33 33 H 1.08998 * 109.47371 * 54.99909 * 4 2 1 34 34 H 1.09002 * 109.46110 * 305.85366 * 6 5 4 35 35 H 1.08997 * 109.46173 * 65.82308 * 6 5 4 36 36 H 1.09003 * 109.50259 * 180.87892 * 7 6 5 37 37 H 1.09001 * 109.50874 * 60.76291 * 7 6 5 38 38 H 1.08995 * 109.52120 * 297.75667 * 8 7 6 39 39 H 1.08992 * 109.47666 * 300.29148 * 9 8 7 40 40 H 1.09000 * 109.46969 * 60.29424 * 9 8 7 41 41 H 1.09004 * 109.47041 * 180.28769 * 9 8 7 42 42 H 1.09000 * 109.50005 * 182.40652 * 10 8 7 43 43 H 1.08997 * 109.50425 * 62.28395 * 10 8 7 44 44 H 1.08998 * 109.46391 * 294.17987 * 11 5 4 45 45 H 1.09003 * 109.45891 * 54.15509 * 11 5 4 46 46 H 0.97005 * 120.00200 * 265.00204 * 12 2 1 47 47 H 1.08006 * 119.82294 * 359.97438 * 16 15 13 48 48 H 1.08002 * 119.79624 * 180.26411 * 17 16 15 49 49 H 1.08003 * 119.98315 * 179.74613 * 18 17 16 50 50 H 0.97002 * 120.00192 * 180.02562 * 23 22 20 51 51 H 1.07998 * 120.20203 * 359.97438 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5039 -0.8267 1.1905 6 6 4.1081 0.4512 0.7927 7 6 5.6151 0.2667 0.6008 8 6 6.2351 -0.2262 1.9113 9 6 7.7320 -0.4704 1.7103 10 6 5.5549 -1.5330 2.3287 11 6 4.0496 -1.2963 2.4704 12 7 2.0182 -0.6908 -1.1961 13 6 2.1470 -0.0185 -2.3571 14 8 1.8576 1.1607 -2.4119 15 6 2.6341 -0.7172 -3.5660 16 6 2.9725 -2.0734 -3.5023 17 6 3.4233 -2.7353 -4.6302 18 6 3.5553 -2.0645 -5.8261 19 6 3.2254 -0.6988 -5.9082 20 6 3.3594 -0.0074 -7.1347 21 1 4.0598 -0.3579 -7.8785 22 6 2.5846 1.1309 -7.3846 23 7 1.5166 1.3657 -6.6665 24 14 3.0753 2.3148 -8.7436 25 1 2.4318 1.9016 -10.0164 26 1 2.6331 3.6872 -8.3881 27 1 4.5513 2.2971 -8.9065 28 6 2.7617 -0.0259 -4.7650 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.7516 -0.1582 2.1370 33 1 1.6053 -1.7197 1.2953 34 1 3.6616 0.7885 -0.1427 35 1 3.9293 1.1948 1.5693 36 1 6.0656 1.2189 0.3208 37 1 5.7949 -0.4667 -0.1853 38 1 6.0894 0.5245 2.6881 39 1 7.8767 -1.2194 0.9319 40 1 8.2153 0.4604 1.4133 41 1 8.1705 -0.8260 2.6427 42 1 5.9623 -1.8666 3.2830 43 1 5.7336 -2.2948 1.5698 44 1 3.8710 -0.5445 3.2391 45 1 3.5606 -2.2285 2.7535 46 1 2.2489 -1.6320 -1.1524 47 1 2.8772 -2.6075 -2.5683 48 1 3.6778 -3.7832 -4.5717 49 1 3.9118 -2.5871 -6.7015 50 1 0.9793 2.1544 -6.8399 51 1 2.5055 1.0219 -4.8179 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598260323.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:28 Heat of formation + Delta-G solvation = -33.434719 kcal Electronic energy + Delta-G solvation = -29002.844023 eV Core-core repulsion = 25286.655507 eV Total energy + Delta-G solvation = -3716.188515 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.87398 -38.79024 -37.08550 -35.85825 -33.79742 -33.57972 -31.19961 -30.88481 -29.55520 -29.30677 -28.36395 -25.31165 -25.10644 -23.58395 -22.79972 -21.95975 -20.94853 -20.25512 -19.73262 -19.38802 -17.69449 -16.37254 -15.95111 -15.86614 -15.13495 -14.85290 -14.72579 -14.61875 -14.45646 -14.11800 -14.00968 -13.69897 -13.27294 -13.18373 -12.92575 -12.72356 -12.48535 -12.44922 -12.42633 -12.04301 -11.89981 -11.84449 -11.64111 -11.43560 -11.25938 -11.11152 -11.02286 -10.93201 -10.71828 -10.68117 -10.45552 -10.36504 -10.11379 -9.96987 -9.63229 -9.16958 -8.93126 -8.53807 -8.35981 -7.56205 -7.45760 -6.75455 -4.36694 2.28694 2.85863 3.10122 3.13296 3.19769 3.65241 3.89553 3.94110 3.98187 4.58488 4.69204 4.69462 4.71553 4.77608 5.13649 5.16335 5.23944 5.32442 5.36375 5.43885 5.44441 5.54659 5.56619 5.63110 5.65572 5.67058 5.71208 5.75668 5.87007 5.87643 5.95303 6.04104 6.10903 6.11636 6.17227 6.22661 6.33187 6.36247 6.39069 6.77420 6.93724 7.03026 7.05146 7.06451 7.11791 7.26590 7.44146 7.77011 7.83477 7.98756 8.19561 8.28263 8.56128 8.85350 8.88982 9.06708 10.19353 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013111 B = 0.003177 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.079798 B = 8810.814826 C = 9423.046228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.085 0.915 4 C 0.048 3.952 5 N -0.530 5.530 6 C 0.050 3.950 7 C -0.111 4.111 8 C -0.093 4.093 9 C -0.146 4.146 10 C -0.110 4.110 11 C 0.057 3.943 12 N -0.718 5.718 13 C 0.565 3.435 14 O -0.552 6.552 15 C -0.127 4.127 16 C -0.212 4.212 17 C -0.100 4.100 18 C -0.212 4.212 19 C 0.099 3.901 20 C -0.462 4.462 21 H 0.080 0.920 22 C 0.074 3.926 23 N -0.785 5.785 24 Si 0.908 3.092 25 H -0.270 1.270 26 H -0.275 1.275 27 H -0.260 1.260 28 C -0.092 4.092 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.027 0.973 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.051 0.949 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.029 0.971 45 H 0.072 0.928 46 H 0.403 0.597 47 H 0.091 0.909 48 H 0.092 0.908 49 H 0.094 0.906 50 H 0.283 0.717 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.944 -3.643 17.522 18.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.035 3.965 3 H 0.103 0.897 4 C -0.080 4.080 5 N -0.255 5.255 6 C -0.078 4.078 7 C -0.149 4.149 8 C -0.112 4.112 9 C -0.203 4.203 10 C -0.148 4.148 11 C -0.071 4.071 12 N -0.372 5.372 13 C 0.356 3.644 14 O -0.431 6.431 15 C -0.130 4.130 16 C -0.232 4.232 17 C -0.118 4.118 18 C -0.232 4.232 19 C 0.096 3.904 20 C -0.491 4.491 21 H 0.098 0.902 22 C -0.145 4.145 23 N -0.409 5.409 24 Si 0.732 3.268 25 H -0.195 1.195 26 H -0.200 1.200 27 H -0.184 1.184 28 C -0.113 4.113 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.045 0.955 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.047 0.953 45 H 0.091 0.909 46 H 0.239 0.761 47 H 0.109 0.891 48 H 0.110 0.890 49 H 0.112 0.888 50 H 0.095 0.905 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.648 -2.966 17.165 17.797 hybrid contribution -0.083 0.622 0.098 0.635 sum 3.565 -2.344 17.263 17.782 Atomic orbital electron populations 1.22160 0.95367 1.02124 1.02475 1.20906 0.93720 0.97492 0.84356 0.89689 1.22452 0.88019 1.01013 0.96529 1.61931 1.04209 1.29513 1.29873 1.22225 0.95325 0.89323 1.00926 1.21635 0.94130 1.01635 0.97503 1.21183 0.95083 0.97220 0.97718 1.21806 0.95314 1.01740 1.01458 1.21633 0.93914 0.97885 1.01367 1.22076 0.95747 0.99607 0.89707 1.45849 1.68349 1.14300 1.08661 1.18815 0.76187 0.86253 0.83179 1.90684 1.50890 1.16277 1.85276 1.19481 1.05965 0.94394 0.93134 1.20369 1.11430 0.93988 0.97402 1.20433 1.00389 0.97520 0.93448 1.21096 1.10933 0.94576 0.96552 1.17584 0.89423 0.90605 0.92760 1.19562 1.19907 1.08432 1.01238 0.90207 1.25938 0.93442 0.97845 0.97256 1.69792 1.10261 1.25139 1.35738 0.86314 0.80313 0.79447 0.80704 1.19500 1.20000 1.18415 1.21618 0.99658 1.00368 0.89616 0.92289 0.91444 0.92441 0.93830 0.90144 0.89355 0.95511 0.91704 0.90668 0.91958 0.92404 0.92778 0.93020 0.91906 0.90867 0.95305 0.90934 0.76139 0.89100 0.89025 0.88752 0.90548 0.84981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 9.48 37.16 0.35 -1.72 16 2 C 0.14 1.93 1.88 -67.93 -0.13 1.80 16 3 H 0.09 1.33 5.98 -51.93 -0.31 1.02 16 4 C 0.05 0.52 4.83 -3.82 -0.02 0.50 16 5 N -0.53 -6.08 4.54 -234.67 -1.07 -7.15 16 6 C 0.05 0.63 4.80 -3.83 -0.02 0.61 16 7 C -0.11 -1.33 5.38 -26.65 -0.14 -1.47 16 8 C -0.09 -0.91 2.79 -90.50 -0.25 -1.16 16 9 C -0.15 -1.29 9.20 37.16 0.34 -0.95 16 10 C -0.11 -1.01 5.38 -26.65 -0.14 -1.15 16 11 C 0.06 0.54 5.42 -3.83 -0.02 0.52 16 12 N -0.72 -11.76 4.22 -54.74 -0.23 -11.99 16 13 C 0.56 12.19 7.49 -12.31 -0.09 12.10 16 14 O -0.55 -13.63 16.00 5.32 0.09 -13.54 16 15 C -0.13 -2.99 5.87 -105.04 -0.62 -3.61 16 16 C -0.21 -4.49 9.55 -38.92 -0.37 -4.86 16 17 C -0.10 -2.15 10.01 -39.73 -0.40 -2.55 16 18 C -0.21 -5.08 9.78 -38.81 -0.38 -5.46 16 19 C 0.10 2.63 5.57 -106.87 -0.59 2.04 16 20 C -0.46 -12.27 9.05 -37.73 -0.34 -12.61 16 21 H 0.08 2.01 7.90 -52.48 -0.41 1.60 16 22 C 0.07 1.89 5.14 -17.35 -0.09 1.80 16 23 N -0.78 -20.97 10.97 55.55 0.61 -20.36 16 24 Si 0.91 18.96 29.59 -169.99 -5.03 13.93 16 25 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 26 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 27 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 28 C -0.09 -2.48 8.23 -38.44 -0.32 -2.79 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.04 0.42 8.08 -51.93 -0.42 0.00 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.09 1.38 5.31 -51.93 -0.28 1.11 16 35 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 46 H 0.40 6.10 6.62 -40.82 -0.27 5.83 16 47 H 0.09 1.63 6.38 -52.48 -0.33 1.30 16 48 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 49 H 0.09 2.11 8.06 -52.48 -0.42 1.69 16 50 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 51 H 0.13 3.84 5.76 -52.49 -0.30 3.54 16 LS Contribution 399.05 15.07 6.01 6.01 Total: -1.00 -28.92 399.05 -11.50 -40.42 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -8.65 Total: 11.66 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -3.23 Total: -18.97 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: -0.69 Total: -39.51 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: 0.09 Total: -13.54 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -28.92 -11.50 -40.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598260323.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.987 kcal (2) G-P(sol) polarization free energy of solvation -28.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds