Wall clock time and date at job start Tue Mar 31 2020 16:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47789 * 2 1 4 4 C 1.53003 * 109.46979 * 119.99612 * 2 1 3 5 5 N 1.46898 * 109.47228 * 174.99562 * 4 2 1 6 6 C 1.46851 * 110.99992 * 45.79302 * 5 4 2 7 7 C 1.53033 * 109.52218 * 185.84038 * 6 5 4 8 8 C 1.53119 * 109.28117 * 300.81321 * 7 6 5 9 9 C 1.52997 * 109.57560 * 177.59011 * 8 7 6 10 10 C 1.53123 * 109.15624 * 57.65893 * 8 7 6 11 11 C 1.46846 * 111.00343 * 169.99787 * 5 4 2 12 12 N 1.46498 * 109.46923 * 239.99129 * 2 1 3 13 13 C 1.34774 * 119.99669 * 85.00526 * 12 2 1 14 14 O 1.21550 * 120.00221 * 359.97438 * 13 12 2 15 15 C 1.47886 * 120.00168 * 180.27493 * 13 12 2 16 16 C 1.39920 * 120.02326 * 359.44637 * 15 13 12 17 17 C 1.38327 * 120.36048 * 179.71545 * 16 15 13 18 18 C 1.37753 * 120.40898 * 0.56504 * 17 16 15 19 19 C 1.40746 * 120.04035 * 359.71592 * 18 17 16 20 20 C 1.41437 * 120.17923 * 180.02562 * 19 18 17 21 21 H 1.08009 * 119.99845 * 334.92899 * 20 19 18 22 22 C 1.39936 * 120.00340 * 154.93332 * 20 19 18 23 23 N 1.30823 * 119.99598 * 342.58086 * 22 20 19 24 24 Si 1.86795 * 120.00306 * 162.58558 * 22 20 19 25 25 H 1.48494 * 109.47345 * 89.99634 * 24 22 20 26 26 H 1.48501 * 109.47433 * 209.99919 * 24 22 20 27 27 H 1.48504 * 109.47118 * 329.99571 * 24 22 20 28 28 C 1.38993 * 120.02928 * 179.72332 * 15 13 12 29 29 H 1.09005 * 109.46925 * 300.00948 * 1 2 3 30 30 H 1.08998 * 109.47064 * 59.99839 * 1 2 3 31 31 H 1.08994 * 109.47555 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47295 * 294.99662 * 4 2 1 33 33 H 1.08998 * 109.47371 * 54.99909 * 4 2 1 34 34 H 1.09002 * 109.46110 * 305.85366 * 6 5 4 35 35 H 1.08997 * 109.46173 * 65.82308 * 6 5 4 36 36 H 1.09003 * 109.50259 * 180.87892 * 7 6 5 37 37 H 1.09001 * 109.50874 * 60.76291 * 7 6 5 38 38 H 1.08995 * 109.52120 * 297.75667 * 8 7 6 39 39 H 1.08992 * 109.47666 * 300.29148 * 9 8 7 40 40 H 1.09000 * 109.46969 * 60.29424 * 9 8 7 41 41 H 1.09004 * 109.47041 * 180.28769 * 9 8 7 42 42 H 1.09000 * 109.50005 * 182.40652 * 10 8 7 43 43 H 1.08997 * 109.50425 * 62.28395 * 10 8 7 44 44 H 1.08998 * 109.46391 * 294.17987 * 11 5 4 45 45 H 1.09003 * 109.45891 * 54.15509 * 11 5 4 46 46 H 0.97005 * 120.00200 * 265.00204 * 12 2 1 47 47 H 1.08006 * 119.82294 * 359.97438 * 16 15 13 48 48 H 1.08002 * 119.79624 * 180.26411 * 17 16 15 49 49 H 1.08003 * 119.98315 * 179.74613 * 18 17 16 50 50 H 0.97002 * 120.00192 * 180.02562 * 23 22 20 51 51 H 1.07998 * 120.20203 * 359.97438 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5039 -0.8267 1.1905 6 6 4.1081 0.4512 0.7927 7 6 5.6151 0.2667 0.6008 8 6 6.2351 -0.2262 1.9113 9 6 7.7320 -0.4704 1.7103 10 6 5.5549 -1.5330 2.3287 11 6 4.0496 -1.2963 2.4704 12 7 2.0182 -0.6908 -1.1961 13 6 2.1470 -0.0185 -2.3571 14 8 1.8576 1.1607 -2.4119 15 6 2.6341 -0.7172 -3.5660 16 6 2.9725 -2.0734 -3.5023 17 6 3.4233 -2.7353 -4.6302 18 6 3.5553 -2.0645 -5.8261 19 6 3.2254 -0.6988 -5.9082 20 6 3.3594 -0.0074 -7.1347 21 1 4.0598 -0.3579 -7.8785 22 6 2.5846 1.1309 -7.3846 23 7 1.5166 1.3657 -6.6665 24 14 3.0753 2.3148 -8.7436 25 1 2.4318 1.9016 -10.0164 26 1 2.6331 3.6872 -8.3881 27 1 4.5513 2.2971 -8.9065 28 6 2.7617 -0.0259 -4.7650 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.7516 -0.1582 2.1370 33 1 1.6053 -1.7197 1.2953 34 1 3.6616 0.7885 -0.1427 35 1 3.9293 1.1948 1.5693 36 1 6.0656 1.2189 0.3208 37 1 5.7949 -0.4667 -0.1853 38 1 6.0894 0.5245 2.6881 39 1 7.8767 -1.2194 0.9319 40 1 8.2153 0.4604 1.4133 41 1 8.1705 -0.8260 2.6427 42 1 5.9623 -1.8666 3.2830 43 1 5.7336 -2.2948 1.5698 44 1 3.8710 -0.5445 3.2391 45 1 3.5606 -2.2285 2.7535 46 1 2.2489 -1.6320 -1.1524 47 1 2.8772 -2.6075 -2.5683 48 1 3.6778 -3.7832 -4.5717 49 1 3.9118 -2.5871 -6.7015 50 1 0.9793 2.1544 -6.8399 51 1 2.5055 1.0219 -4.8179 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598260323.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:27 Heat of formation + Delta-G solvation = -49.771946 kcal Electronic energy + Delta-G solvation = -29003.552458 eV Core-core repulsion = 25286.655507 eV Total energy + Delta-G solvation = -3716.896951 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.19080 -40.05540 -38.81548 -37.10143 -35.60245 -34.77398 -32.71833 -31.75985 -31.32540 -31.00600 -29.23003 -27.19088 -26.08847 -24.74486 -24.14416 -22.93163 -22.74519 -21.44396 -21.16365 -20.49597 -19.49319 -17.91064 -17.34293 -17.09662 -16.76065 -16.38823 -15.88092 -15.71439 -15.64555 -15.36354 -15.20718 -15.01294 -14.89151 -14.46981 -14.24722 -14.19710 -13.91022 -13.59272 -13.45353 -13.28293 -13.08946 -12.89348 -12.77031 -12.76026 -12.68891 -12.55857 -12.40744 -12.19767 -12.13013 -11.91728 -11.84012 -11.54186 -11.48293 -11.15046 -11.05448 -11.02996 -10.70095 -10.03498 -9.42699 -9.35277 -9.23329 -8.65051 -6.36738 0.43501 1.03143 1.35807 1.46524 1.52218 2.15573 2.20873 2.32396 2.81427 2.94413 3.65188 3.72854 3.86182 3.88607 3.92780 4.10647 4.14917 4.29944 4.33538 4.40762 4.45551 4.49671 4.56348 4.62121 4.64814 4.74114 4.74709 4.75758 4.80037 4.87591 4.90734 4.96542 5.02748 5.06314 5.10984 5.15911 5.21802 5.22393 5.27455 5.30068 5.33885 5.34653 5.54193 5.55508 5.63581 5.90199 5.96114 6.07441 6.10497 6.21206 6.31237 6.56165 6.78339 6.89703 6.97071 7.42826 8.31722 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013111 B = 0.003177 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.079798 B = 8810.814826 C = 9423.046228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.138 3.862 3 H 0.060 0.940 4 C 0.057 3.943 5 N -0.540 5.540 6 C 0.055 3.945 7 C -0.111 4.111 8 C -0.089 4.089 9 C -0.144 4.144 10 C -0.107 4.107 11 C 0.056 3.944 12 N -0.693 5.693 13 C 0.562 3.438 14 O -0.594 6.594 15 C -0.137 4.137 16 C -0.192 4.192 17 C -0.097 4.097 18 C -0.218 4.218 19 C 0.068 3.932 20 C -0.500 4.500 21 H 0.083 0.917 22 C 0.030 3.970 23 N -0.826 5.826 24 Si 0.981 3.019 25 H -0.257 1.257 26 H -0.273 1.273 27 H -0.255 1.255 28 C -0.131 4.131 29 H 0.086 0.914 30 H 0.029 0.971 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.052 0.948 35 H 0.031 0.969 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.068 0.932 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.063 0.937 44 H 0.036 0.964 45 H 0.090 0.910 46 H 0.412 0.588 47 H 0.133 0.867 48 H 0.137 0.863 49 H 0.107 0.893 50 H 0.285 0.715 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.455 -6.085 20.122 21.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.033 3.967 3 H 0.079 0.921 4 C -0.071 4.071 5 N -0.265 5.265 6 C -0.073 4.073 7 C -0.149 4.149 8 C -0.107 4.107 9 C -0.201 4.201 10 C -0.145 4.145 11 C -0.071 4.071 12 N -0.345 5.345 13 C 0.352 3.648 14 O -0.476 6.476 15 C -0.140 4.140 16 C -0.212 4.212 17 C -0.115 4.115 18 C -0.238 4.238 19 C 0.066 3.934 20 C -0.530 4.530 21 H 0.101 0.899 22 C -0.185 4.185 23 N -0.452 5.452 24 Si 0.802 3.198 25 H -0.181 1.181 26 H -0.198 1.198 27 H -0.179 1.179 28 C -0.151 4.151 29 H 0.105 0.895 30 H 0.048 0.952 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.121 0.879 34 H 0.070 0.930 35 H 0.049 0.951 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.102 0.898 43 H 0.081 0.919 44 H 0.054 0.946 45 H 0.109 0.891 46 H 0.250 0.750 47 H 0.151 0.849 48 H 0.155 0.845 49 H 0.125 0.875 50 H 0.096 0.904 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.162 -5.465 19.808 20.965 hybrid contribution -0.228 1.247 -0.537 1.376 sum 3.935 -4.218 19.271 20.116 Atomic orbital electron populations 1.22103 0.94275 1.03133 1.02024 1.21111 0.94504 0.96607 0.84451 0.92138 1.22429 0.87670 1.01991 0.95015 1.61952 1.04580 1.28454 1.31561 1.22047 0.95525 0.90339 0.99349 1.21606 0.94028 1.00778 0.98440 1.21152 0.95496 0.97860 0.96239 1.21786 0.94794 1.01476 1.02060 1.21626 0.93847 0.96920 1.02080 1.22164 0.95876 1.00460 0.88585 1.45648 1.66491 1.14403 1.07949 1.18647 0.76218 0.85754 0.84155 1.90659 1.52890 1.18082 1.86006 1.19816 1.05401 0.95718 0.93063 1.20826 1.08510 0.92726 0.99151 1.20907 0.98787 0.99523 0.92241 1.21396 1.10319 0.93733 0.98316 1.17925 0.90443 0.92134 0.92924 1.19850 1.21093 1.10210 1.01824 0.89912 1.26836 0.92859 0.99133 0.99652 1.69896 1.11579 1.25872 1.37847 0.85219 0.80047 0.76818 0.77756 1.18118 1.19761 1.17871 1.21411 1.02895 0.99300 0.91506 0.89486 0.95188 0.90617 0.91805 0.87902 0.92997 0.95052 0.92491 0.92690 0.91381 0.93118 0.93068 0.91361 0.89776 0.91866 0.94592 0.89139 0.75007 0.84894 0.84541 0.87483 0.90421 0.88566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.79 9.48 71.98 0.68 -3.11 16 2 C 0.14 3.65 1.88 44.99 0.08 3.74 16 3 H 0.06 1.95 5.98 -2.39 -0.01 1.93 16 4 C 0.06 1.04 4.83 86.30 0.42 1.46 16 5 N -0.54 -11.06 4.54 -896.36 -4.07 -15.14 16 6 C 0.06 1.39 4.80 86.32 0.41 1.80 16 7 C -0.11 -2.63 5.38 30.64 0.16 -2.47 16 8 C -0.09 -1.57 2.79 -10.71 -0.03 -1.60 16 9 C -0.14 -2.32 9.20 71.98 0.66 -1.65 16 10 C -0.11 -1.63 5.38 30.65 0.16 -1.47 16 11 C 0.06 0.86 5.42 86.33 0.47 1.33 16 12 N -0.69 -22.24 4.22 -445.38 -1.88 -24.12 16 13 C 0.56 25.11 7.49 86.80 0.65 25.76 16 14 O -0.59 -31.34 16.00 -3.87 -0.06 -31.40 16 15 C -0.14 -6.63 5.87 -20.13 -0.12 -6.74 16 16 C -0.19 -7.79 9.55 22.70 0.22 -7.57 16 17 C -0.10 -3.93 10.01 22.18 0.22 -3.71 16 18 C -0.22 -10.43 9.78 22.77 0.22 -10.20 16 19 C 0.07 3.78 5.57 -21.32 -0.12 3.66 16 20 C -0.50 -27.88 9.05 23.47 0.21 -27.67 16 21 H 0.08 4.35 7.90 -2.91 -0.02 4.33 16 22 C 0.03 1.60 5.14 85.25 0.44 2.03 16 23 N -0.83 -47.11 10.97 21.82 0.24 -46.87 16 24 Si 0.98 40.50 29.59 68.60 2.03 42.53 16 25 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 26 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 27 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 28 C -0.13 -7.42 8.23 23.01 0.19 -7.23 16 29 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 30 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.06 0.98 8.08 -2.39 -0.02 0.96 16 33 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.05 1.69 5.31 -2.39 -0.01 1.68 16 35 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.06 1.39 8.14 -2.39 -0.02 1.38 16 37 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.04 0.52 8.14 -2.39 -0.02 0.51 16 45 H 0.09 1.11 8.12 -2.39 -0.02 1.09 16 46 H 0.41 11.45 6.62 -92.70 -0.61 10.83 16 47 H 0.13 4.22 6.38 -2.91 -0.02 4.20 16 48 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 49 H 0.11 4.74 8.06 -2.91 -0.02 4.71 16 50 H 0.29 15.01 8.30 -92.71 -0.77 14.24 16 51 H 0.10 6.11 5.76 -2.91 -0.02 6.09 16 Total: -1.00 -69.43 399.05 1.49 -67.94 By element: Atomic # 1 Polarization: 40.41 SS G_CDS: 0.29 Total: 40.71 kcal Atomic # 6 Polarization: -38.60 SS G_CDS: 4.94 Total: -33.65 kcal Atomic # 7 Polarization: -80.41 SS G_CDS: -5.71 Total: -86.13 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -0.06 Total: -31.40 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Total: -69.43 1.49 -67.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598260323.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.167 kcal (2) G-P(sol) polarization free energy of solvation -69.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds