Wall clock time and date at job start Tue Mar 31 2020 16:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47042 * 2 1 4 4 C 1.52993 * 109.47118 * 239.99783 * 2 1 3 5 5 N 1.46909 * 109.46999 * 184.07829 * 4 2 1 6 6 C 1.46853 * 110.99617 * 293.18094 * 5 4 2 7 7 C 1.53035 * 109.51967 * 174.16199 * 6 5 4 8 8 C 1.53119 * 109.28105 * 59.18020 * 7 6 5 9 9 C 1.53001 * 109.52098 * 182.38037 * 8 7 6 10 10 C 1.53120 * 109.15677 * 302.34416 * 8 7 6 11 11 C 1.46845 * 111.00161 * 168.97258 * 5 4 2 12 12 N 1.46504 * 109.46458 * 119.99698 * 2 1 3 13 13 C 1.34769 * 120.00129 * 272.25276 * 12 2 1 14 14 O 1.21549 * 120.00332 * 0.02562 * 13 12 2 15 15 C 1.47891 * 120.00277 * 180.02562 * 13 12 2 16 16 C 1.39923 * 120.02226 * 359.73239 * 15 13 12 17 17 C 1.38322 * 120.35616 * 179.71454 * 16 15 13 18 18 C 1.37757 * 120.41471 * 0.55717 * 17 16 15 19 19 C 1.40744 * 120.03358 * 359.72262 * 18 17 16 20 20 C 1.41449 * 120.17329 * 180.02562 * 19 18 17 21 21 H 1.07994 * 119.99704 * 151.50197 * 20 19 18 22 22 C 1.39940 * 119.99604 * 331.50208 * 20 19 18 23 23 N 1.30826 * 119.99250 * 161.71126 * 22 20 19 24 24 Si 1.86799 * 120.00410 * 341.70648 * 22 20 19 25 25 H 1.48498 * 109.46951 * 94.57169 * 24 22 20 26 26 H 1.48493 * 109.47241 * 214.57078 * 24 22 20 27 27 H 1.48503 * 109.46926 * 334.57289 * 24 22 20 28 28 C 1.38986 * 120.02831 * 180.02562 * 15 13 12 29 29 H 1.08996 * 109.47063 * 300.00304 * 1 2 3 30 30 H 1.09002 * 109.46726 * 60.00004 * 1 2 3 31 31 H 1.08996 * 109.47042 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47251 * 64.07745 * 4 2 1 33 33 H 1.08996 * 109.47562 * 304.07253 * 4 2 1 34 34 H 1.08994 * 109.46290 * 54.14523 * 6 5 4 35 35 H 1.09000 * 109.44834 * 294.16955 * 6 5 4 36 36 H 1.09000 * 109.50454 * 299.23468 * 7 6 5 37 37 H 1.08998 * 109.53308 * 179.13817 * 7 6 5 38 38 H 1.08994 * 109.52571 * 62.25002 * 8 7 6 39 39 H 1.08995 * 109.47661 * 59.87039 * 9 8 7 40 40 H 1.09000 * 109.46606 * 179.87517 * 9 8 7 41 41 H 1.08998 * 109.46567 * 299.86512 * 9 8 7 42 42 H 1.09005 * 109.50044 * 177.60072 * 10 8 7 43 43 H 1.09003 * 109.50790 * 297.71094 * 10 8 7 44 44 H 1.09006 * 109.45843 * 305.85468 * 11 5 4 45 45 H 1.08999 * 109.46440 * 65.83050 * 11 5 4 46 46 H 0.96996 * 119.99739 * 92.26486 * 12 2 1 47 47 H 1.08004 * 119.81912 * 359.97438 * 16 15 13 48 48 H 1.08002 * 119.79462 * 180.25642 * 17 16 15 49 49 H 1.07998 * 119.98078 * 179.73751 * 18 17 16 50 50 H 0.97010 * 119.99559 * 179.97438 * 23 22 20 51 51 H 1.08002 * 120.20506 * 359.97356 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5058 -0.8071 -1.2009 6 6 4.1149 0.5244 -1.3127 7 6 5.6281 0.4130 -1.1132 8 6 6.2101 -0.5257 -2.1738 9 6 7.7139 -0.6879 -1.9431 10 6 5.5246 -1.8907 -2.0672 11 6 4.0144 -1.7126 -2.2391 12 7 2.0183 -0.6906 1.1963 13 6 2.1995 -0.0059 2.3428 14 8 1.9576 1.1846 2.3846 15 6 2.6929 -0.7029 3.5503 16 6 2.9663 -2.0744 3.5044 17 6 3.4335 -2.7320 4.6280 18 6 3.6243 -2.0472 5.8080 19 6 3.3492 -0.6685 5.8748 20 6 3.5446 0.0376 7.0847 21 1 3.7876 1.0896 7.0627 22 6 3.4230 -0.6271 8.3102 23 7 3.9380 -0.1028 9.3925 24 14 2.5253 -2.2627 8.4006 25 1 3.5058 -3.3723 8.2891 26 1 1.8093 -2.3634 9.6977 27 1 1.5471 -2.3527 7.2869 28 6 2.8795 0.0027 4.7332 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.7376 -0.1671 -2.1376 33 1 1.6184 -1.7257 -1.2864 34 1 3.6954 1.1808 -0.5504 35 1 3.9081 0.9363 -2.3005 36 1 5.8359 0.0138 -0.1204 37 1 6.0822 1.3990 -1.2113 38 1 6.0367 -0.1073 -3.1652 39 1 7.8864 -1.1063 -0.9515 40 1 8.1269 -1.3579 -2.6971 41 1 8.1997 0.2851 -2.0165 42 1 5.9044 -2.5505 -2.8474 43 1 5.7307 -2.3262 -1.0895 44 1 3.5219 -2.6809 -2.1495 45 1 3.8083 -1.2898 -3.2224 46 1 2.2111 -1.6406 1.1630 47 1 2.8156 -2.6216 2.5855 48 1 3.6456 -3.7900 4.5813 49 1 3.9854 -2.5685 6.6822 50 1 3.8534 -0.5633 10.2421 51 1 2.6657 1.0605 4.7744 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598260324.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:31 Heat of formation + Delta-G solvation = -35.475037 kcal Electronic energy + Delta-G solvation = -28713.484895 eV Core-core repulsion = 24997.207905 eV Total energy + Delta-G solvation = -3716.276990 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.86110 -39.00638 -37.35562 -35.97605 -33.89746 -33.62819 -31.44704 -30.98967 -30.16930 -29.64889 -28.45840 -25.35098 -25.10398 -23.55539 -23.19082 -22.05090 -20.83400 -20.46038 -19.95254 -19.70851 -17.84612 -16.40281 -16.18603 -16.07274 -15.48588 -14.97579 -14.74544 -14.61272 -14.56466 -14.29042 -14.14702 -13.77390 -13.59857 -13.31028 -13.11089 -12.72305 -12.69266 -12.56329 -12.55283 -12.24334 -12.01816 -11.97939 -11.82080 -11.65373 -11.54182 -11.33147 -11.03659 -10.98012 -10.78471 -10.72515 -10.48967 -10.44429 -10.25874 -9.94206 -9.65805 -9.35595 -9.06057 -8.67476 -8.44992 -7.80047 -7.70558 -6.97509 -4.51050 2.00879 2.57397 3.07899 3.20120 3.28652 3.53310 3.72788 3.77392 3.96046 4.50894 4.54341 4.61798 4.63005 4.71654 5.03632 5.08246 5.16050 5.21723 5.26964 5.34844 5.36452 5.39399 5.45538 5.48197 5.50668 5.55575 5.57521 5.67692 5.70982 5.77124 5.88814 5.91802 5.96778 6.02215 6.05897 6.09147 6.11432 6.19941 6.31403 6.44178 6.72645 6.74445 6.82779 6.95067 6.97988 7.04630 7.27221 7.48295 7.56729 7.80230 7.91483 8.14255 8.32171 8.58466 8.74884 8.86552 10.04820 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014125 B = 0.003030 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.877467 B = 9240.195464 C =10081.664840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.146 3.854 3 H 0.086 0.914 4 C 0.047 3.953 5 N -0.531 5.531 6 C 0.055 3.945 7 C -0.112 4.112 8 C -0.093 4.093 9 C -0.147 4.147 10 C -0.112 4.112 11 C 0.057 3.943 12 N -0.711 5.711 13 C 0.565 3.435 14 O -0.555 6.555 15 C -0.105 4.105 16 C -0.212 4.212 17 C -0.084 4.084 18 C -0.225 4.225 19 C 0.082 3.918 20 C -0.443 4.443 21 H 0.093 0.907 22 C 0.083 3.917 23 N -0.805 5.805 24 Si 0.913 3.087 25 H -0.270 1.270 26 H -0.291 1.291 27 H -0.244 1.244 28 C -0.138 4.138 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.045 0.955 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.028 0.972 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.051 0.949 41 H 0.053 0.947 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.029 0.971 46 H 0.401 0.599 47 H 0.097 0.903 48 H 0.097 0.903 49 H 0.102 0.898 50 H 0.286 0.714 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.080 -5.006 -22.325 22.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.040 3.960 3 H 0.104 0.896 4 C -0.081 4.081 5 N -0.255 5.255 6 C -0.072 4.072 7 C -0.150 4.150 8 C -0.111 4.111 9 C -0.204 4.204 10 C -0.149 4.149 11 C -0.070 4.070 12 N -0.363 5.363 13 C 0.355 3.645 14 O -0.435 6.435 15 C -0.108 4.108 16 C -0.232 4.232 17 C -0.102 4.102 18 C -0.245 4.245 19 C 0.079 3.921 20 C -0.471 4.471 21 H 0.111 0.889 22 C -0.136 4.136 23 N -0.429 5.429 24 Si 0.739 3.261 25 H -0.196 1.196 26 H -0.218 1.218 27 H -0.167 1.167 28 C -0.158 4.158 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.047 0.953 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.047 0.953 46 H 0.237 0.763 47 H 0.115 0.885 48 H 0.116 0.884 49 H 0.120 0.880 50 H 0.096 0.904 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.051 -4.283 -21.574 21.995 hybrid contribution -0.422 -0.865 -0.589 1.128 sum -0.473 -5.148 -22.163 22.758 Atomic orbital electron populations 1.22168 0.95385 1.02113 1.02490 1.20846 0.93324 0.97630 0.84206 0.89591 1.22431 0.87961 1.01111 0.96599 1.61845 1.04919 1.10879 1.47882 1.22125 0.95297 0.90046 0.99777 1.21642 0.94099 0.99252 1.00013 1.21170 0.95192 0.95941 0.98818 1.21810 0.95201 1.01488 1.01888 1.21645 0.93855 0.96805 1.02629 1.22072 0.95995 0.96723 0.92252 1.45724 1.68130 1.12957 1.09537 1.18722 0.76081 0.86389 0.83261 1.90678 1.52252 1.15520 1.85017 1.19444 1.04306 0.94116 0.92930 1.20392 1.11631 0.93287 0.97891 1.20499 0.98639 0.97782 0.93288 1.21159 1.10116 0.95820 0.97358 1.17689 0.89561 0.91489 0.93333 1.19525 1.40108 0.98847 0.88624 0.88925 1.26171 0.93047 0.99212 0.95173 1.69699 1.33039 1.39339 1.00829 0.86303 0.80927 0.80877 0.77965 1.19611 1.21833 1.16711 1.21246 1.03105 0.99490 0.91987 0.91578 0.92135 0.92458 0.93722 0.90279 0.90236 0.95332 0.90633 0.91702 0.91947 0.92331 0.92949 0.92801 0.91826 0.90740 0.90848 0.95324 0.76267 0.88544 0.88443 0.87997 0.90373 0.86823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.51 37.16 0.35 -1.45 16 2 C 0.15 1.79 2.44 -67.93 -0.17 1.62 16 3 H 0.09 1.23 6.00 -51.93 -0.31 0.92 16 4 C 0.05 0.45 4.53 -3.82 -0.02 0.43 16 5 N -0.53 -5.52 4.39 -234.67 -1.03 -6.55 16 6 C 0.06 0.60 5.30 -3.83 -0.02 0.58 16 7 C -0.11 -1.18 5.38 -26.65 -0.14 -1.33 16 8 C -0.09 -0.82 2.79 -90.50 -0.25 -1.07 16 9 C -0.15 -1.21 9.20 37.16 0.34 -0.87 16 10 C -0.11 -0.96 5.38 -26.65 -0.14 -1.11 16 11 C 0.06 0.50 5.46 -3.84 -0.02 0.48 16 12 N -0.71 -10.54 4.75 -54.74 -0.26 -10.80 16 13 C 0.57 11.10 7.76 -12.31 -0.10 11.01 16 14 O -0.56 -12.48 15.95 5.32 0.08 -12.40 16 15 C -0.10 -2.26 5.87 -105.04 -0.62 -2.88 16 16 C -0.21 -4.16 9.55 -38.92 -0.37 -4.53 16 17 C -0.08 -1.74 10.01 -39.73 -0.40 -2.13 16 18 C -0.23 -5.32 7.17 -38.81 -0.28 -5.60 16 19 C 0.08 2.10 5.14 -106.87 -0.55 1.55 16 20 C -0.44 -12.07 9.57 -37.72 -0.36 -12.43 16 21 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 22 C 0.08 2.18 5.41 -17.34 -0.09 2.08 16 23 N -0.81 -21.45 13.93 55.55 0.77 -20.67 16 24 Si 0.91 20.63 24.48 -169.99 -4.16 16.47 16 25 H -0.27 -5.86 6.65 56.52 0.38 -5.48 16 26 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 27 H -0.24 -5.65 6.86 56.52 0.39 -5.26 16 28 C -0.14 -3.37 9.34 -38.45 -0.36 -3.73 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.04 0.38 8.11 -51.93 -0.42 -0.04 16 33 H 0.08 0.67 7.97 -51.93 -0.41 0.25 16 34 H 0.08 1.02 6.34 -51.93 -0.33 0.69 16 35 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.07 0.58 8.00 -51.93 -0.42 0.17 16 45 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 46 H 0.40 5.40 6.65 -40.82 -0.27 5.13 16 47 H 0.10 1.56 6.38 -52.48 -0.33 1.22 16 48 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 49 H 0.10 2.39 4.52 -52.49 -0.24 2.16 16 50 H 0.29 6.87 8.30 -40.82 -0.34 6.53 16 51 H 0.11 2.84 7.64 -52.49 -0.40 2.44 16 LS Contribution 395.77 15.07 5.96 5.96 Total: -1.00 -28.85 395.77 -10.47 -39.32 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -8.65 Total: 8.04 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: -3.19 Total: -19.38 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: -0.52 Total: -38.02 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.08 Total: -12.40 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.16 Total: 16.47 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -28.85 -10.47 -39.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598260324.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.844 kcal (2) G-P(sol) polarization free energy of solvation -28.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds