Wall clock time and date at job start Tue Mar 31 2020 16:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47042 * 2 1 4 4 C 1.52993 * 109.47118 * 239.99783 * 2 1 3 5 5 N 1.46909 * 109.46999 * 184.07829 * 4 2 1 6 6 C 1.46853 * 110.99617 * 293.18094 * 5 4 2 7 7 C 1.53035 * 109.51967 * 174.16199 * 6 5 4 8 8 C 1.53119 * 109.28105 * 59.18020 * 7 6 5 9 9 C 1.53001 * 109.52098 * 182.38037 * 8 7 6 10 10 C 1.53120 * 109.15677 * 302.34416 * 8 7 6 11 11 C 1.46845 * 111.00161 * 168.97258 * 5 4 2 12 12 N 1.46504 * 109.46458 * 119.99698 * 2 1 3 13 13 C 1.34769 * 120.00129 * 272.25276 * 12 2 1 14 14 O 1.21549 * 120.00332 * 0.02562 * 13 12 2 15 15 C 1.47891 * 120.00277 * 180.02562 * 13 12 2 16 16 C 1.39923 * 120.02226 * 359.73239 * 15 13 12 17 17 C 1.38322 * 120.35616 * 179.71454 * 16 15 13 18 18 C 1.37757 * 120.41471 * 0.55717 * 17 16 15 19 19 C 1.40744 * 120.03358 * 359.72262 * 18 17 16 20 20 C 1.41449 * 120.17329 * 180.02562 * 19 18 17 21 21 H 1.07994 * 119.99704 * 151.50197 * 20 19 18 22 22 C 1.39940 * 119.99604 * 331.50208 * 20 19 18 23 23 N 1.30826 * 119.99250 * 161.71126 * 22 20 19 24 24 Si 1.86799 * 120.00410 * 341.70648 * 22 20 19 25 25 H 1.48498 * 109.46951 * 94.57169 * 24 22 20 26 26 H 1.48493 * 109.47241 * 214.57078 * 24 22 20 27 27 H 1.48503 * 109.46926 * 334.57289 * 24 22 20 28 28 C 1.38986 * 120.02831 * 180.02562 * 15 13 12 29 29 H 1.08996 * 109.47063 * 300.00304 * 1 2 3 30 30 H 1.09002 * 109.46726 * 60.00004 * 1 2 3 31 31 H 1.08996 * 109.47042 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47251 * 64.07745 * 4 2 1 33 33 H 1.08996 * 109.47562 * 304.07253 * 4 2 1 34 34 H 1.08994 * 109.46290 * 54.14523 * 6 5 4 35 35 H 1.09000 * 109.44834 * 294.16955 * 6 5 4 36 36 H 1.09000 * 109.50454 * 299.23468 * 7 6 5 37 37 H 1.08998 * 109.53308 * 179.13817 * 7 6 5 38 38 H 1.08994 * 109.52571 * 62.25002 * 8 7 6 39 39 H 1.08995 * 109.47661 * 59.87039 * 9 8 7 40 40 H 1.09000 * 109.46606 * 179.87517 * 9 8 7 41 41 H 1.08998 * 109.46567 * 299.86512 * 9 8 7 42 42 H 1.09005 * 109.50044 * 177.60072 * 10 8 7 43 43 H 1.09003 * 109.50790 * 297.71094 * 10 8 7 44 44 H 1.09006 * 109.45843 * 305.85468 * 11 5 4 45 45 H 1.08999 * 109.46440 * 65.83050 * 11 5 4 46 46 H 0.96996 * 119.99739 * 92.26486 * 12 2 1 47 47 H 1.08004 * 119.81912 * 359.97438 * 16 15 13 48 48 H 1.08002 * 119.79462 * 180.25642 * 17 16 15 49 49 H 1.07998 * 119.98078 * 179.73751 * 18 17 16 50 50 H 0.97010 * 119.99559 * 179.97438 * 23 22 20 51 51 H 1.08002 * 120.20506 * 359.97356 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5058 -0.8071 -1.2009 6 6 4.1149 0.5244 -1.3127 7 6 5.6281 0.4130 -1.1132 8 6 6.2101 -0.5257 -2.1738 9 6 7.7139 -0.6879 -1.9431 10 6 5.5246 -1.8907 -2.0672 11 6 4.0144 -1.7126 -2.2391 12 7 2.0183 -0.6906 1.1963 13 6 2.1995 -0.0059 2.3428 14 8 1.9576 1.1846 2.3846 15 6 2.6929 -0.7029 3.5503 16 6 2.9663 -2.0744 3.5044 17 6 3.4335 -2.7320 4.6280 18 6 3.6243 -2.0472 5.8080 19 6 3.3492 -0.6685 5.8748 20 6 3.5446 0.0376 7.0847 21 1 3.7876 1.0896 7.0627 22 6 3.4230 -0.6271 8.3102 23 7 3.9380 -0.1028 9.3925 24 14 2.5253 -2.2627 8.4006 25 1 3.5058 -3.3723 8.2891 26 1 1.8093 -2.3634 9.6977 27 1 1.5471 -2.3527 7.2869 28 6 2.8795 0.0027 4.7332 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.7376 -0.1671 -2.1376 33 1 1.6184 -1.7257 -1.2864 34 1 3.6954 1.1808 -0.5504 35 1 3.9081 0.9363 -2.3005 36 1 5.8359 0.0138 -0.1204 37 1 6.0822 1.3990 -1.2113 38 1 6.0367 -0.1073 -3.1652 39 1 7.8864 -1.1063 -0.9515 40 1 8.1269 -1.3579 -2.6971 41 1 8.1997 0.2851 -2.0165 42 1 5.9044 -2.5505 -2.8474 43 1 5.7307 -2.3262 -1.0895 44 1 3.5219 -2.6809 -2.1495 45 1 3.8083 -1.2898 -3.2224 46 1 2.2111 -1.6406 1.1630 47 1 2.8156 -2.6216 2.5855 48 1 3.6456 -3.7900 4.5813 49 1 3.9854 -2.5685 6.6822 50 1 3.8534 -0.5633 10.2421 51 1 2.6657 1.0605 4.7744 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598260324.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:30 Heat of formation + Delta-G solvation = -53.129136 kcal Electronic energy + Delta-G solvation = -28714.250435 eV Core-core repulsion = 24997.207905 eV Total energy + Delta-G solvation = -3717.042529 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.13850 -40.09684 -39.03587 -37.09296 -35.58537 -34.84709 -32.95640 -31.90616 -31.75094 -31.17114 -29.22142 -27.10556 -26.09654 -24.88282 -24.20676 -22.88328 -22.47410 -21.84634 -21.28974 -20.53528 -19.57698 -18.08251 -17.43794 -17.24306 -16.87853 -16.43838 -15.92197 -15.75525 -15.61597 -15.39735 -15.25449 -15.20256 -14.87265 -14.55823 -14.41020 -14.20782 -14.01448 -13.79932 -13.56940 -13.30090 -13.25904 -13.05528 -12.81431 -12.72396 -12.67398 -12.66559 -12.50335 -12.28666 -12.10334 -11.85642 -11.71828 -11.54963 -11.52230 -11.16194 -11.14291 -11.04785 -10.75562 -10.03957 -9.61038 -9.50956 -9.20990 -8.91761 -6.54739 0.23822 0.76554 1.25357 1.42153 1.49011 2.01960 2.14205 2.30175 2.68515 2.92553 3.48980 3.71791 3.86213 3.88852 3.95376 4.00472 4.20349 4.28135 4.32783 4.34971 4.41766 4.44570 4.51337 4.58342 4.60305 4.65984 4.72010 4.76919 4.78692 4.80699 4.88150 4.91637 4.93519 4.95517 5.02994 5.07650 5.16317 5.19219 5.24492 5.28436 5.31148 5.34478 5.44708 5.56464 5.61972 5.69335 5.75265 5.85710 6.13322 6.14823 6.22825 6.31157 6.66912 6.73329 6.74812 7.37913 8.17495 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014125 B = 0.003030 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.877467 B = 9240.195464 C =10081.664840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.142 3.858 3 H 0.060 0.940 4 C 0.056 3.944 5 N -0.546 5.546 6 C 0.059 3.941 7 C -0.112 4.112 8 C -0.088 4.088 9 C -0.145 4.145 10 C -0.110 4.110 11 C 0.059 3.941 12 N -0.687 5.687 13 C 0.562 3.438 14 O -0.594 6.594 15 C -0.110 4.110 16 C -0.179 4.179 17 C -0.082 4.082 18 C -0.229 4.229 19 C 0.067 3.933 20 C -0.490 4.490 21 H 0.048 0.952 22 C 0.045 3.955 23 N -0.850 5.850 24 Si 0.970 3.030 25 H -0.246 1.246 26 H -0.278 1.278 27 H -0.251 1.251 28 C -0.170 4.170 29 H 0.033 0.967 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.103 0.897 34 H 0.050 0.950 35 H 0.041 0.959 36 H 0.048 0.952 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.046 0.954 40 H 0.066 0.934 41 H 0.053 0.947 42 H 0.082 0.918 43 H 0.058 0.942 44 H 0.089 0.911 45 H 0.039 0.961 46 H 0.413 0.587 47 H 0.147 0.853 48 H 0.146 0.854 49 H 0.106 0.894 50 H 0.295 0.705 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.917 -9.488 -26.253 27.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.037 3.963 3 H 0.078 0.922 4 C -0.072 4.072 5 N -0.271 5.271 6 C -0.069 4.069 7 C -0.150 4.150 8 C -0.107 4.107 9 C -0.203 4.203 10 C -0.147 4.147 11 C -0.068 4.068 12 N -0.338 5.338 13 C 0.351 3.649 14 O -0.476 6.476 15 C -0.113 4.113 16 C -0.199 4.199 17 C -0.100 4.100 18 C -0.248 4.248 19 C 0.064 3.936 20 C -0.519 4.519 21 H 0.066 0.934 22 C -0.170 4.170 23 N -0.476 5.476 24 Si 0.793 3.207 25 H -0.171 1.171 26 H -0.204 1.204 27 H -0.175 1.175 28 C -0.191 4.191 29 H 0.052 0.948 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.121 0.879 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.100 0.900 43 H 0.077 0.923 44 H 0.107 0.893 45 H 0.057 0.943 46 H 0.251 0.749 47 H 0.164 0.836 48 H 0.164 0.836 49 H 0.124 0.876 50 H 0.106 0.894 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.880 -8.795 -25.545 27.031 hybrid contribution -0.149 0.551 0.347 0.668 sum -1.029 -8.244 -25.198 26.532 Atomic orbital electron populations 1.22108 0.94033 1.03250 1.02156 1.21062 0.94316 0.96634 0.84267 0.92181 1.22392 0.87492 1.02193 0.95161 1.61828 1.05455 1.10583 1.49213 1.22005 0.95172 0.90341 0.99369 1.21617 0.94369 0.99684 0.99313 1.21146 0.95332 0.95858 0.98361 1.21798 0.95053 1.01767 1.01645 1.21639 0.94153 0.96555 1.02393 1.22127 0.95798 0.96890 0.92035 1.45564 1.66188 1.13229 1.08796 1.18526 0.76317 0.85933 0.84095 1.90668 1.54071 1.17216 1.85645 1.19752 1.03482 0.95325 0.92712 1.20969 1.07324 0.92073 0.99493 1.21025 0.97016 1.00058 0.91873 1.21366 1.09649 0.94742 0.99064 1.17757 0.90183 0.92882 0.92741 1.19473 1.44218 0.97377 0.90838 0.93418 1.26926 0.93211 1.02627 0.94209 1.69731 1.34895 1.41377 1.01608 0.85440 0.79912 0.77297 0.78099 1.17094 1.20439 1.17513 1.21163 1.05487 0.98741 0.93690 0.94806 0.89667 0.90487 0.91938 0.87858 0.93103 0.94130 0.93308 0.91802 0.90978 0.93514 0.91545 0.92829 0.89990 0.92309 0.89315 0.94320 0.74938 0.83571 0.83606 0.87633 0.89430 0.89662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 9.51 71.98 0.68 -2.40 16 2 C 0.14 3.19 2.44 44.99 0.11 3.30 16 3 H 0.06 1.71 6.00 -2.39 -0.01 1.70 16 4 C 0.06 0.84 4.53 86.30 0.39 1.23 16 5 N -0.55 -9.67 4.39 -896.37 -3.94 -13.61 16 6 C 0.06 1.22 5.30 86.32 0.46 1.67 16 7 C -0.11 -2.30 5.38 30.65 0.16 -2.14 16 8 C -0.09 -1.38 2.79 -10.71 -0.03 -1.41 16 9 C -0.15 -2.18 9.20 71.98 0.66 -1.52 16 10 C -0.11 -1.54 5.38 30.64 0.16 -1.38 16 11 C 0.06 0.77 5.46 86.32 0.47 1.25 16 12 N -0.69 -18.78 4.75 -445.37 -2.11 -20.89 16 13 C 0.56 22.02 7.76 86.80 0.67 22.70 16 14 O -0.59 -27.90 15.95 -3.87 -0.06 -27.97 16 15 C -0.11 -4.68 5.87 -20.13 -0.12 -4.80 16 16 C -0.18 -6.30 9.55 22.70 0.22 -6.09 16 17 C -0.08 -3.04 10.01 22.18 0.22 -2.81 16 18 C -0.23 -10.51 7.17 22.77 0.16 -10.35 16 19 C 0.07 3.55 5.14 -21.32 -0.11 3.44 16 20 C -0.49 -28.89 9.57 23.47 0.22 -28.67 16 21 H 0.05 3.09 8.06 -2.91 -0.02 3.06 16 22 C 0.04 2.45 5.41 85.26 0.46 2.91 16 23 N -0.85 -47.79 13.93 21.83 0.30 -47.49 16 24 Si 0.97 42.51 24.48 68.60 1.68 44.19 16 25 H -0.25 -9.78 6.65 99.48 0.66 -9.12 16 26 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 27 H -0.25 -11.20 6.86 99.48 0.68 -10.51 16 28 C -0.17 -8.78 9.34 23.00 0.21 -8.57 16 29 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.06 0.79 8.11 -2.39 -0.02 0.77 16 33 H 0.10 1.13 7.97 -2.39 -0.02 1.11 16 34 H 0.05 1.33 6.34 -2.39 -0.02 1.32 16 35 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 43 H 0.06 1.02 8.14 -2.39 -0.02 1.01 16 44 H 0.09 0.94 8.00 -2.38 -0.02 0.92 16 45 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 46 H 0.41 9.26 6.65 -92.71 -0.62 8.64 16 47 H 0.15 3.73 6.38 -2.91 -0.02 3.72 16 48 H 0.15 4.12 8.06 -2.91 -0.02 4.10 16 49 H 0.11 4.75 4.52 -2.91 -0.01 4.74 16 50 H 0.30 14.76 8.30 -92.70 -0.77 13.99 16 51 H 0.09 4.75 7.64 -2.91 -0.02 4.72 16 Total: -1.00 -69.95 395.77 1.12 -68.83 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: 0.23 Total: 30.56 kcal Atomic # 6 Polarization: -38.65 SS G_CDS: 5.02 Total: -33.62 kcal Atomic # 7 Polarization: -76.24 SS G_CDS: -5.75 Total: -81.99 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -0.06 Total: -27.97 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 1.68 Total: 44.19 kcal Total: -69.95 1.12 -68.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598260324.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.700 kcal (2) G-P(sol) polarization free energy of solvation -69.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds