Wall clock time and date at job start Tue Mar 31 2020 16:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47223 * 2 1 4 4 C 1.53002 * 109.47160 * 119.99601 * 2 1 3 5 5 N 1.46899 * 109.47493 * 174.56182 * 4 2 1 6 6 C 1.46840 * 111.00346 * 200.04233 * 5 4 2 7 7 C 1.53035 * 109.52296 * 174.16195 * 6 5 4 8 8 C 1.53114 * 109.28291 * 59.17879 * 7 6 5 9 9 C 1.53002 * 109.57794 * 182.40913 * 8 7 6 10 10 C 1.53118 * 109.15833 * 302.34412 * 8 7 6 11 11 C 1.46847 * 110.99813 * 75.82741 * 5 4 2 12 12 N 1.46501 * 109.47365 * 239.99763 * 2 1 3 13 13 C 1.34768 * 120.00092 * 87.11074 * 12 2 1 14 14 O 1.21591 * 120.00110 * 359.97438 * 13 12 2 15 15 C 1.47645 * 120.00410 * 180.02562 * 13 12 2 16 16 C 1.40021 * 119.88810 * 359.72354 * 15 13 12 17 17 C 1.36319 * 120.10041 * 179.75761 * 16 15 13 18 18 C 1.40886 * 119.89252 * 0.52238 * 17 16 15 19 19 C 1.41105 * 120.10267 * 179.71773 * 18 17 16 20 20 H 1.08003 * 120.00296 * 204.49840 * 19 18 17 21 21 C 1.40231 * 120.00287 * 24.49768 * 19 18 17 22 22 N 1.30640 * 119.99673 * 18.64063 * 21 19 18 23 23 Si 1.86801 * 120.00067 * 198.64065 * 21 19 18 24 24 H 1.48500 * 109.46913 * 90.00069 * 23 21 19 25 25 H 1.48505 * 109.46704 * 209.99840 * 23 21 19 26 26 H 1.48494 * 109.47016 * 329.99857 * 23 21 19 27 27 C 1.40888 * 119.79440 * 359.72800 * 18 17 16 28 28 C 1.36316 * 119.89212 * 0.02562 * 27 18 17 29 29 H 1.09000 * 109.46969 * 60.00156 * 1 2 3 30 30 H 1.09000 * 109.46746 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47167 * 300.00174 * 1 2 3 32 32 H 1.08995 * 109.47299 * 294.56269 * 4 2 1 33 33 H 1.08998 * 109.46979 * 54.56317 * 4 2 1 34 34 H 1.09002 * 109.46033 * 294.17295 * 6 5 4 35 35 H 1.09000 * 109.46274 * 54.14536 * 6 5 4 36 36 H 1.09006 * 109.50452 * 299.23323 * 7 6 5 37 37 H 1.09007 * 109.53559 * 179.14434 * 7 6 5 38 38 H 1.08994 * 109.52200 * 62.24624 * 8 7 6 39 39 H 1.08996 * 109.47016 * 179.71229 * 9 8 7 40 40 H 1.09000 * 109.46796 * 299.71693 * 9 8 7 41 41 H 1.09003 * 109.46788 * 59.71650 * 9 8 7 42 42 H 1.08997 * 109.50550 * 297.71303 * 10 8 7 43 43 H 1.09003 * 109.53809 * 177.61144 * 10 8 7 44 44 H 1.08998 * 109.46716 * 305.85629 * 11 5 4 45 45 H 1.09004 * 109.46406 * 65.83697 * 11 5 4 46 46 H 0.97000 * 119.99541 * 267.11081 * 12 2 1 47 47 H 1.07989 * 119.94598 * 0.02562 * 16 15 13 48 48 H 1.08005 * 120.05246 * 180.22999 * 17 16 15 49 49 H 0.97002 * 120.00533 * 179.97438 * 22 21 19 50 50 H 1.08003 * 120.05079 * 179.97438 * 27 18 17 51 51 H 1.08003 * 119.94375 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5032 -0.8359 1.1856 6 6 3.9871 -1.8978 2.0769 7 6 5.4926 -2.0866 1.8771 8 6 6.2123 -0.7702 2.1831 9 6 7.7119 -0.9343 1.9276 10 6 5.6558 0.3297 1.2747 11 6 4.1456 0.4485 1.4920 12 7 2.0184 -0.6907 -1.1961 13 6 2.1876 -0.0087 -2.3462 14 8 1.9345 1.1797 -2.3911 15 6 2.6793 -0.7048 -3.5518 16 6 2.9746 -2.0724 -3.4962 17 6 3.4241 -2.7205 -4.6081 18 6 3.6018 -2.0096 -5.8114 19 6 4.0726 -2.6748 -6.9634 20 1 4.5774 -2.1188 -7.7396 21 6 3.8850 -4.0577 -7.1005 22 7 2.9848 -4.6695 -6.3779 23 14 4.9221 -5.0250 -8.3162 24 1 6.1528 -5.5098 -7.6412 25 1 4.1430 -6.1853 -8.8182 26 1 5.2950 -4.1489 -9.4557 27 6 3.3083 -0.6325 -5.8609 28 6 2.8545 0.0059 -4.7453 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.7584 -0.1542 2.1366 33 1 1.5994 -1.7168 1.2994 34 1 3.7902 -1.6204 3.1125 35 1 3.4705 -2.8294 1.8459 36 1 5.6891 -2.3774 0.8451 37 1 5.8549 -2.8643 2.5495 38 1 6.0479 -0.4991 3.2259 39 1 8.2217 0.0051 2.1411 40 1 8.1070 -1.7175 2.5746 41 1 7.8750 -1.2075 0.8851 42 1 5.8549 0.0770 0.2333 43 1 6.1340 1.2789 1.5167 44 1 3.7441 1.2211 0.8363 45 1 3.9481 0.7148 2.5304 46 1 2.2200 -1.6388 -1.1603 47 1 2.8419 -2.6154 -2.5723 48 1 3.6481 -3.7761 -4.5653 49 1 2.8547 -5.6260 -6.4729 50 1 3.4435 -0.0835 -6.7811 51 1 2.6296 1.0616 -4.7822 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598261397.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:34 Heat of formation + Delta-G solvation = -41.364757 kcal Electronic energy + Delta-G solvation = -28659.969840 eV Core-core repulsion = 24943.437452 eV Total energy + Delta-G solvation = -3716.532387 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.63102 -38.76553 -37.14421 -35.77228 -33.79976 -33.70369 -31.16570 -30.90094 -29.57533 -29.33139 -28.36613 -25.83600 -25.08833 -23.35292 -22.39180 -21.82603 -20.97057 -20.32007 -19.76617 -19.43252 -17.45638 -16.76111 -16.08831 -15.87642 -15.35437 -14.83859 -14.67453 -14.48255 -14.19526 -13.97263 -13.93228 -13.72236 -13.27715 -13.17607 -12.91560 -12.74724 -12.47514 -12.43549 -12.17274 -11.99487 -11.94682 -11.82617 -11.66081 -11.55961 -11.28436 -11.25522 -11.23234 -10.90582 -10.86720 -10.69292 -10.57740 -10.36683 -10.21301 -9.96929 -9.48902 -9.28480 -8.82972 -8.40723 -8.31853 -7.63711 -7.46602 -6.98190 -4.53571 2.33184 2.95571 2.99229 3.01232 3.10987 3.70713 3.78281 3.98415 4.02049 4.60487 4.64705 4.69149 4.69492 4.85719 5.14672 5.17330 5.26220 5.29156 5.38630 5.45383 5.50540 5.53816 5.55766 5.60529 5.64268 5.68084 5.75415 5.77800 5.83529 5.96973 6.02696 6.03306 6.09443 6.13044 6.15669 6.30567 6.37744 6.38940 6.39733 6.83668 6.88950 6.99290 7.06116 7.09187 7.21139 7.25930 7.51008 7.74720 7.88305 7.93390 8.14280 8.44171 8.47088 8.69896 8.82780 9.25415 9.94195 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011043 B = 0.003170 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.845391 B = 8829.367860 C =10159.266039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.151 3.849 3 H 0.081 0.919 4 C 0.047 3.953 5 N -0.530 5.530 6 C 0.058 3.942 7 C -0.112 4.112 8 C -0.092 4.092 9 C -0.146 4.146 10 C -0.112 4.112 11 C 0.058 3.942 12 N -0.718 5.718 13 C 0.574 3.426 14 O -0.583 6.583 15 C -0.279 4.279 16 C -0.059 4.059 17 C -0.179 4.179 18 C 0.129 3.871 19 C -0.447 4.447 20 H 0.084 0.916 21 C 0.076 3.924 22 N -0.773 5.773 23 Si 0.912 3.088 24 H -0.265 1.265 25 H -0.276 1.276 26 H -0.259 1.259 27 C -0.240 4.240 28 C -0.024 4.024 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.045 0.955 33 H 0.076 0.924 34 H 0.027 0.973 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.077 0.923 45 H 0.028 0.972 46 H 0.398 0.602 47 H 0.089 0.911 48 H 0.118 0.882 49 H 0.285 0.715 50 H 0.096 0.904 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.605 1.057 16.686 16.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.045 3.955 3 H 0.100 0.900 4 C -0.081 4.081 5 N -0.254 5.254 6 C -0.070 4.070 7 C -0.150 4.150 8 C -0.111 4.111 9 C -0.204 4.204 10 C -0.150 4.150 11 C -0.070 4.070 12 N -0.369 5.369 13 C 0.369 3.631 14 O -0.466 6.466 15 C -0.283 4.283 16 C -0.078 4.078 17 C -0.199 4.199 18 C 0.126 3.874 19 C -0.474 4.474 20 H 0.102 0.898 21 C -0.145 4.145 22 N -0.396 5.396 23 Si 0.735 3.265 24 H -0.190 1.190 25 H -0.201 1.201 26 H -0.183 1.183 27 C -0.259 4.259 28 C -0.043 4.043 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.095 0.905 34 H 0.046 0.954 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.095 0.905 45 H 0.046 0.954 46 H 0.233 0.767 47 H 0.107 0.893 48 H 0.136 0.864 49 H 0.097 0.903 50 H 0.114 0.886 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.435 1.524 16.234 16.486 hybrid contribution 0.181 -0.826 0.375 0.925 sum 2.616 0.698 16.610 16.829 Atomic orbital electron populations 1.22172 0.95811 1.01932 1.02192 1.20719 0.92924 0.97438 0.84468 0.90049 1.22444 0.87896 1.01017 0.96766 1.61790 1.04780 1.05844 1.52986 1.22088 0.96172 0.94988 0.93769 1.21652 0.93819 0.96773 1.02776 1.21161 0.95148 0.95685 0.99078 1.21811 0.95257 1.01278 1.02028 1.21645 0.94226 0.98089 1.01043 1.22098 0.95007 0.91398 0.98470 1.45660 1.68959 1.12960 1.09363 1.18515 0.75589 0.86055 0.82972 1.90611 1.54432 1.16089 1.85445 1.18936 1.20930 0.94488 0.93967 1.20474 0.97596 0.92815 0.96956 1.20946 1.06846 1.00146 0.91918 1.17765 0.86056 0.91102 0.92504 1.19830 1.31392 0.92368 1.03858 0.89823 1.26069 0.93749 0.98348 0.96341 1.69751 1.24091 1.11733 1.34042 0.86244 0.80405 0.79111 0.80701 1.18971 1.20084 1.18324 1.20704 1.11914 0.95917 0.97396 1.20355 0.94540 0.97646 0.91773 0.91680 0.92606 0.92451 0.93728 0.90509 0.95433 0.90787 0.90625 0.91835 0.92001 0.92890 0.92943 0.92298 0.90613 0.91833 0.90496 0.95428 0.76696 0.89305 0.86407 0.90343 0.88559 0.88272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.50 37.16 0.35 -1.70 16 2 C 0.15 2.10 2.61 -67.93 -0.18 1.92 16 3 H 0.08 1.30 6.40 -51.93 -0.33 0.96 16 4 C 0.05 0.52 4.58 -3.82 -0.02 0.50 16 5 N -0.53 -6.19 4.30 -234.67 -1.01 -7.20 16 6 C 0.06 0.58 5.43 -3.84 -0.02 0.55 16 7 C -0.11 -1.11 5.38 -26.65 -0.14 -1.25 16 8 C -0.09 -0.88 2.79 -90.50 -0.25 -1.14 16 9 C -0.15 -1.31 9.21 37.16 0.34 -0.96 16 10 C -0.11 -1.24 5.38 -26.65 -0.14 -1.38 16 11 C 0.06 0.67 5.29 -3.83 -0.02 0.65 16 12 N -0.72 -12.10 4.72 -54.81 -0.26 -12.36 16 13 C 0.57 12.30 7.75 -12.42 -0.10 12.20 16 14 O -0.58 -13.93 15.95 5.29 0.08 -13.84 16 15 C -0.28 -6.46 5.89 -104.73 -0.62 -7.08 16 16 C -0.06 -1.33 9.47 -39.60 -0.38 -1.71 16 17 C -0.18 -4.45 8.64 -39.27 -0.34 -4.79 16 18 C 0.13 3.33 5.57 -106.81 -0.60 2.73 16 19 C -0.45 -11.28 9.04 -37.75 -0.34 -11.63 16 20 H 0.08 2.03 7.92 -52.48 -0.42 1.61 16 21 C 0.08 1.79 5.12 -17.31 -0.09 1.70 16 22 N -0.77 -18.73 10.99 55.56 0.61 -18.12 16 23 Si 0.91 17.50 29.60 -169.99 -5.03 12.47 16 24 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 25 H -0.28 -5.17 7.11 56.52 0.40 -4.77 16 26 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 27 C -0.24 -5.92 9.73 -39.27 -0.38 -6.30 16 28 C -0.02 -0.58 9.52 -39.61 -0.38 -0.95 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.04 0.44 8.00 -51.93 -0.42 0.02 16 33 H 0.08 0.77 7.79 -51.93 -0.40 0.36 16 34 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.07 0.70 7.93 -51.93 -0.41 0.29 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.08 1.01 6.82 -51.93 -0.35 0.66 16 45 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.40 6.33 6.62 -40.82 -0.27 6.06 16 47 H 0.09 1.73 6.37 -52.49 -0.33 1.40 16 48 H 0.12 2.97 6.17 -52.48 -0.32 2.64 16 49 H 0.29 6.22 8.29 -40.82 -0.34 5.88 16 50 H 0.10 2.23 8.06 -52.48 -0.42 1.80 16 51 H 0.10 2.32 7.63 -52.48 -0.40 1.92 16 LS Contribution 401.62 15.07 6.05 6.05 Total: -1.00 -28.06 401.62 -11.56 -39.62 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: -8.72 Total: 12.00 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -3.29 Total: -18.62 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: -0.66 Total: -37.68 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: 0.08 Total: -13.84 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.03 Total: 12.47 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -28.06 -11.56 -39.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598261397.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.747 kcal (2) G-P(sol) polarization free energy of solvation -28.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds