Wall clock time and date at job start Tue Mar 31 2020 16:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47223 * 2 1 4 4 C 1.53002 * 109.47160 * 119.99601 * 2 1 3 5 5 N 1.46899 * 109.47493 * 174.56182 * 4 2 1 6 6 C 1.46840 * 111.00346 * 200.04233 * 5 4 2 7 7 C 1.53035 * 109.52296 * 174.16195 * 6 5 4 8 8 C 1.53114 * 109.28291 * 59.17879 * 7 6 5 9 9 C 1.53002 * 109.57794 * 182.40913 * 8 7 6 10 10 C 1.53118 * 109.15833 * 302.34412 * 8 7 6 11 11 C 1.46847 * 110.99813 * 75.82741 * 5 4 2 12 12 N 1.46501 * 109.47365 * 239.99763 * 2 1 3 13 13 C 1.34768 * 120.00092 * 87.11074 * 12 2 1 14 14 O 1.21591 * 120.00110 * 359.97438 * 13 12 2 15 15 C 1.47645 * 120.00410 * 180.02562 * 13 12 2 16 16 C 1.40021 * 119.88810 * 359.72354 * 15 13 12 17 17 C 1.36319 * 120.10041 * 179.75761 * 16 15 13 18 18 C 1.40886 * 119.89252 * 0.52238 * 17 16 15 19 19 C 1.41105 * 120.10267 * 179.71773 * 18 17 16 20 20 H 1.08003 * 120.00296 * 204.49840 * 19 18 17 21 21 C 1.40231 * 120.00287 * 24.49768 * 19 18 17 22 22 N 1.30640 * 119.99673 * 18.64063 * 21 19 18 23 23 Si 1.86801 * 120.00067 * 198.64065 * 21 19 18 24 24 H 1.48500 * 109.46913 * 90.00069 * 23 21 19 25 25 H 1.48505 * 109.46704 * 209.99840 * 23 21 19 26 26 H 1.48494 * 109.47016 * 329.99857 * 23 21 19 27 27 C 1.40888 * 119.79440 * 359.72800 * 18 17 16 28 28 C 1.36316 * 119.89212 * 0.02562 * 27 18 17 29 29 H 1.09000 * 109.46969 * 60.00156 * 1 2 3 30 30 H 1.09000 * 109.46746 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47167 * 300.00174 * 1 2 3 32 32 H 1.08995 * 109.47299 * 294.56269 * 4 2 1 33 33 H 1.08998 * 109.46979 * 54.56317 * 4 2 1 34 34 H 1.09002 * 109.46033 * 294.17295 * 6 5 4 35 35 H 1.09000 * 109.46274 * 54.14536 * 6 5 4 36 36 H 1.09006 * 109.50452 * 299.23323 * 7 6 5 37 37 H 1.09007 * 109.53559 * 179.14434 * 7 6 5 38 38 H 1.08994 * 109.52200 * 62.24624 * 8 7 6 39 39 H 1.08996 * 109.47016 * 179.71229 * 9 8 7 40 40 H 1.09000 * 109.46796 * 299.71693 * 9 8 7 41 41 H 1.09003 * 109.46788 * 59.71650 * 9 8 7 42 42 H 1.08997 * 109.50550 * 297.71303 * 10 8 7 43 43 H 1.09003 * 109.53809 * 177.61144 * 10 8 7 44 44 H 1.08998 * 109.46716 * 305.85629 * 11 5 4 45 45 H 1.09004 * 109.46406 * 65.83697 * 11 5 4 46 46 H 0.97000 * 119.99541 * 267.11081 * 12 2 1 47 47 H 1.07989 * 119.94598 * 0.02562 * 16 15 13 48 48 H 1.08005 * 120.05246 * 180.22999 * 17 16 15 49 49 H 0.97002 * 120.00533 * 179.97438 * 22 21 19 50 50 H 1.08003 * 120.05079 * 179.97438 * 27 18 17 51 51 H 1.08003 * 119.94375 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5032 -0.8359 1.1856 6 6 3.9871 -1.8978 2.0769 7 6 5.4926 -2.0866 1.8771 8 6 6.2123 -0.7702 2.1831 9 6 7.7119 -0.9343 1.9276 10 6 5.6558 0.3297 1.2747 11 6 4.1456 0.4485 1.4920 12 7 2.0184 -0.6907 -1.1961 13 6 2.1876 -0.0087 -2.3462 14 8 1.9345 1.1797 -2.3911 15 6 2.6793 -0.7048 -3.5518 16 6 2.9746 -2.0724 -3.4962 17 6 3.4241 -2.7205 -4.6081 18 6 3.6018 -2.0096 -5.8114 19 6 4.0726 -2.6748 -6.9634 20 1 4.5774 -2.1188 -7.7396 21 6 3.8850 -4.0577 -7.1005 22 7 2.9848 -4.6695 -6.3779 23 14 4.9221 -5.0250 -8.3162 24 1 6.1528 -5.5098 -7.6412 25 1 4.1430 -6.1853 -8.8182 26 1 5.2950 -4.1489 -9.4557 27 6 3.3083 -0.6325 -5.8609 28 6 2.8545 0.0059 -4.7453 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.7584 -0.1542 2.1366 33 1 1.5994 -1.7168 1.2994 34 1 3.7902 -1.6204 3.1125 35 1 3.4705 -2.8294 1.8459 36 1 5.6891 -2.3774 0.8451 37 1 5.8549 -2.8643 2.5495 38 1 6.0479 -0.4991 3.2259 39 1 8.2217 0.0051 2.1411 40 1 8.1070 -1.7175 2.5746 41 1 7.8750 -1.2075 0.8851 42 1 5.8549 0.0770 0.2333 43 1 6.1340 1.2789 1.5167 44 1 3.7441 1.2211 0.8363 45 1 3.9481 0.7148 2.5304 46 1 2.2200 -1.6388 -1.1603 47 1 2.8419 -2.6154 -2.5723 48 1 3.6481 -3.7761 -4.5653 49 1 2.8547 -5.6260 -6.4729 50 1 3.4435 -0.0835 -6.7811 51 1 2.6296 1.0616 -4.7822 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598261397.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:33 Heat of formation + Delta-G solvation = -55.863345 kcal Electronic energy + Delta-G solvation = -28660.598546 eV Core-core repulsion = 24943.437452 eV Total energy + Delta-G solvation = -3717.161093 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.92315 -40.03146 -38.88893 -36.99473 -35.63377 -34.80468 -32.67297 -31.76370 -31.31590 -31.08679 -29.22182 -27.63056 -26.03220 -24.24675 -23.93027 -22.88109 -22.71405 -21.67414 -21.08093 -20.53656 -19.33451 -18.37156 -17.38582 -17.04860 -16.85543 -15.92804 -15.75200 -15.65600 -15.50167 -15.29753 -15.28600 -14.99121 -14.86127 -14.45003 -14.19136 -14.02169 -13.90695 -13.64636 -13.45781 -13.29346 -13.16958 -12.99945 -12.85738 -12.72680 -12.66187 -12.57458 -12.47928 -12.33880 -12.11320 -11.84431 -11.73401 -11.53380 -11.33753 -11.14986 -11.09792 -11.06850 -10.59266 -9.89806 -9.53318 -9.36000 -9.18413 -8.77271 -6.45244 0.50675 1.17785 1.39602 1.44965 1.53749 2.17025 2.22529 2.51297 2.83691 2.94860 3.72981 3.75209 3.86566 3.88503 3.96826 4.21090 4.29460 4.34739 4.35453 4.42311 4.43963 4.48151 4.50839 4.58153 4.64163 4.69572 4.77242 4.80368 4.81484 4.87234 4.93761 4.94797 5.02112 5.04939 5.10396 5.16032 5.19987 5.24616 5.28009 5.30955 5.33579 5.34058 5.56480 5.61319 5.77791 5.87099 5.98717 6.03004 6.18422 6.23739 6.25817 6.56918 6.79826 6.86572 6.93659 7.59688 8.18421 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011043 B = 0.003170 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.845391 B = 8829.367860 C =10159.266039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.147 3.853 3 H 0.058 0.942 4 C 0.056 3.944 5 N -0.550 5.550 6 C 0.059 3.941 7 C -0.112 4.112 8 C -0.088 4.088 9 C -0.145 4.145 10 C -0.111 4.111 11 C 0.061 3.939 12 N -0.700 5.700 13 C 0.573 3.427 14 O -0.613 6.613 15 C -0.288 4.288 16 C -0.049 4.049 17 C -0.197 4.197 18 C 0.102 3.898 19 C -0.478 4.478 20 H 0.083 0.917 21 C 0.040 3.960 22 N -0.798 5.798 23 Si 0.986 3.014 24 H -0.259 1.259 25 H -0.264 1.264 26 H -0.258 1.258 27 C -0.254 4.254 28 C -0.035 4.035 29 H 0.033 0.967 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.042 0.958 35 H 0.081 0.919 36 H 0.052 0.948 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.043 0.957 42 H 0.045 0.955 43 H 0.070 0.930 44 H 0.053 0.947 45 H 0.044 0.956 46 H 0.405 0.595 47 H 0.120 0.880 48 H 0.112 0.888 49 H 0.297 0.703 50 H 0.101 0.899 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.712 -0.624 18.824 19.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.042 3.958 3 H 0.077 0.923 4 C -0.072 4.072 5 N -0.275 5.275 6 C -0.068 4.068 7 C -0.149 4.149 8 C -0.106 4.106 9 C -0.202 4.202 10 C -0.149 4.149 11 C -0.067 4.067 12 N -0.350 5.350 13 C 0.366 3.634 14 O -0.498 6.498 15 C -0.293 4.293 16 C -0.068 4.068 17 C -0.217 4.217 18 C 0.099 3.901 19 C -0.506 4.506 20 H 0.101 0.899 21 C -0.179 4.179 22 N -0.422 5.422 23 Si 0.806 3.194 24 H -0.183 1.183 25 H -0.188 1.188 26 H -0.182 1.182 27 C -0.274 4.274 28 C -0.054 4.054 29 H 0.052 0.948 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.084 0.916 33 H 0.113 0.887 34 H 0.060 0.940 35 H 0.100 0.900 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.062 0.938 46 H 0.241 0.759 47 H 0.138 0.862 48 H 0.130 0.870 49 H 0.108 0.892 50 H 0.120 0.880 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.527 -0.171 18.417 18.591 hybrid contribution 0.106 -0.254 -0.218 0.351 sum 2.633 -0.425 18.200 18.394 Atomic orbital electron populations 1.22105 0.94456 1.02806 1.02094 1.20951 0.93931 0.96460 0.84451 0.92331 1.22373 0.87581 1.01826 0.95455 1.61742 1.05250 1.06252 1.54277 1.22120 0.95982 0.94577 0.94120 1.21649 0.94166 0.97315 1.01803 1.21138 0.95303 0.94936 0.99227 1.21796 0.95061 1.02003 1.01356 1.21621 0.94441 0.99184 0.99662 1.22020 0.94941 0.90968 0.98747 1.45544 1.67314 1.13102 1.09030 1.18311 0.75670 0.85650 0.83749 1.90591 1.55899 1.17283 1.86044 1.19244 1.20500 0.94956 0.94587 1.20682 0.96029 0.92568 0.97564 1.20974 1.08269 0.99990 0.92445 1.18104 0.86824 0.91704 0.93446 1.20090 1.32531 0.93856 1.04074 0.89884 1.26894 0.94380 0.98509 0.98127 1.69766 1.24710 1.12668 1.35037 0.85132 0.78598 0.77582 0.78074 1.18321 1.18839 1.18211 1.20837 1.12597 0.96014 0.97946 1.20491 0.94801 0.97839 0.92313 0.94777 0.91187 0.89573 0.91606 0.88708 0.93953 0.90047 0.92928 0.90057 0.90612 0.92366 0.91663 0.93810 0.93649 0.91115 0.92890 0.93756 0.75903 0.86201 0.87007 0.89225 0.88041 0.88259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.68 9.50 71.98 0.68 -2.99 16 2 C 0.15 3.92 2.61 44.99 0.12 4.04 16 3 H 0.06 1.87 6.40 -2.39 -0.02 1.85 16 4 C 0.06 1.07 4.58 86.30 0.40 1.46 16 5 N -0.55 -11.83 4.30 -896.37 -3.85 -15.68 16 6 C 0.06 1.01 5.43 86.33 0.47 1.48 16 7 C -0.11 -1.98 5.38 30.64 0.16 -1.82 16 8 C -0.09 -1.53 2.79 -10.72 -0.03 -1.56 16 9 C -0.14 -2.41 9.21 71.98 0.66 -1.74 16 10 C -0.11 -2.41 5.38 30.65 0.16 -2.25 16 11 C 0.06 1.34 5.29 86.33 0.46 1.80 16 12 N -0.70 -23.12 4.72 -445.59 -2.10 -25.22 16 13 C 0.57 24.87 7.75 86.73 0.67 25.54 16 14 O -0.61 -30.05 15.95 -4.00 -0.06 -30.11 16 15 C -0.29 -13.63 5.89 -19.93 -0.12 -13.75 16 16 C -0.05 -2.24 9.47 22.25 0.21 -2.03 16 17 C -0.20 -10.00 8.64 22.47 0.19 -9.80 16 18 C 0.10 5.45 5.57 -21.28 -0.12 5.34 16 19 C -0.48 -24.72 9.04 23.46 0.21 -24.51 16 20 H 0.08 4.14 7.92 -2.91 -0.02 4.12 16 21 C 0.04 1.88 5.12 85.35 0.44 2.32 16 22 N -0.80 -38.69 10.99 21.87 0.24 -38.45 16 23 Si 0.99 35.38 29.60 68.60 2.03 37.41 16 24 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 25 H -0.26 -8.91 7.11 99.48 0.71 -8.21 16 26 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 27 C -0.25 -13.06 9.73 22.47 0.22 -12.84 16 28 C -0.04 -1.76 9.52 22.25 0.21 -1.55 16 29 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.07 1.04 8.00 -2.39 -0.02 1.02 16 33 H 0.09 1.52 7.79 -2.39 -0.02 1.50 16 34 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.08 1.28 7.93 -2.39 -0.02 1.26 16 36 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 37 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.05 1.41 6.82 -2.39 -0.02 1.39 16 45 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 46 H 0.40 12.25 6.62 -92.71 -0.61 11.64 16 47 H 0.12 4.54 6.37 -2.92 -0.02 4.52 16 48 H 0.11 5.73 6.17 -2.91 -0.02 5.71 16 49 H 0.30 12.74 8.29 -92.71 -0.77 11.97 16 50 H 0.10 4.91 8.06 -2.91 -0.02 4.89 16 51 H 0.10 4.85 7.63 -2.91 -0.02 4.83 16 Total: -1.00 -62.72 401.62 1.55 -61.17 By element: Atomic # 1 Polarization: 43.46 SS G_CDS: 0.29 Total: 43.75 kcal Atomic # 6 Polarization: -37.86 SS G_CDS: 5.00 Total: -32.86 kcal Atomic # 7 Polarization: -73.65 SS G_CDS: -5.71 Total: -79.36 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -0.06 Total: -30.11 kcal Atomic # 14 Polarization: 35.38 SS G_CDS: 2.03 Total: 37.41 kcal Total: -62.72 1.55 -61.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598261397.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.310 kcal (2) G-P(sol) polarization free energy of solvation -62.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds