Wall clock time and date at job start Tue Mar 31 2020 16:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.47083 * 2 1 4 4 C 1.53003 * 109.47043 * 240.00296 * 2 1 3 5 5 N 1.46898 * 109.46896 * 62.24865 * 4 2 1 6 6 C 1.46848 * 111.00085 * 51.20678 * 5 4 2 7 7 C 1.53034 * 109.52408 * 185.83677 * 6 5 4 8 8 C 1.53124 * 109.27766 * 300.82039 * 7 6 5 9 9 C 1.53002 * 109.57146 * 177.59221 * 8 7 6 10 10 C 1.53118 * 109.16134 * 57.65625 * 8 7 6 11 11 C 1.46849 * 111.00099 * 175.41314 * 5 4 2 12 12 N 1.46495 * 109.47086 * 120.00245 * 2 1 3 13 13 C 1.34780 * 120.00343 * 282.86896 * 12 2 1 14 14 O 1.21589 * 119.99355 * 359.97438 * 13 12 2 15 15 C 1.47634 * 120.00117 * 180.02562 * 13 12 2 16 16 C 1.40010 * 119.89612 * 180.02562 * 15 13 12 17 17 C 1.36315 * 120.10908 * 180.23325 * 16 15 13 18 18 C 1.40888 * 119.89062 * 359.51652 * 17 16 15 19 19 C 1.41110 * 120.10444 * 180.23138 * 18 17 16 20 20 H 1.08001 * 120.00402 * 202.31668 * 19 18 17 21 21 C 1.40235 * 119.99902 * 22.32422 * 19 18 17 22 22 N 1.30646 * 119.99989 * 24.00880 * 21 19 18 23 23 Si 1.86795 * 119.99668 * 204.01167 * 21 19 18 24 24 H 1.48504 * 109.46991 * 94.82075 * 23 21 19 25 25 H 1.48501 * 109.46929 * 214.81683 * 23 21 19 26 26 H 1.48499 * 109.47567 * 334.81764 * 23 21 19 27 27 C 1.40885 * 119.79360 * 0.47826 * 18 17 16 28 28 C 1.36320 * 119.89128 * 359.75415 * 27 18 17 29 29 H 1.08999 * 109.47129 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46858 * 299.99686 * 1 2 3 31 31 H 1.09000 * 109.47153 * 59.99678 * 1 2 3 32 32 H 1.08994 * 109.47017 * 182.25102 * 4 2 1 33 33 H 1.09003 * 109.46950 * 302.25096 * 4 2 1 34 34 H 1.09001 * 109.46502 * 305.85361 * 6 5 4 35 35 H 1.09009 * 109.46114 * 65.81984 * 6 5 4 36 36 H 1.09003 * 109.50314 * 180.88351 * 7 6 5 37 37 H 1.09000 * 109.50847 * 60.76256 * 7 6 5 38 38 H 1.09005 * 109.52438 * 297.74730 * 8 7 6 39 39 H 1.08994 * 109.47235 * 300.28279 * 9 8 7 40 40 H 1.08994 * 109.47595 * 60.28968 * 9 8 7 41 41 H 1.09002 * 109.46763 * 180.28321 * 9 8 7 42 42 H 1.09000 * 109.50291 * 182.40546 * 10 8 7 43 43 H 1.08998 * 109.50023 * 62.28657 * 10 8 7 44 44 H 1.08996 * 109.46484 * 294.18451 * 11 5 4 45 45 H 1.09003 * 109.45783 * 54.15820 * 11 5 4 46 46 H 0.97008 * 119.99733 * 102.86955 * 12 2 1 47 47 H 1.08002 * 119.94589 * 359.95197 * 16 15 13 48 48 H 1.08000 * 120.05750 * 179.74198 * 17 16 15 49 49 H 0.97000 * 120.00142 * 179.97438 * 22 21 19 50 50 H 1.08004 * 120.05491 * 179.73426 * 27 18 17 51 51 H 1.08000 * 119.94873 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 1.5953 0.0020 -2.4480 6 6 1.9318 1.4285 -2.3572 7 6 1.3281 2.1735 -3.5499 8 6 1.8817 1.5810 -4.8488 9 6 1.2370 2.2808 -6.0470 10 6 1.5597 0.0848 -4.8960 11 6 2.1568 -0.5995 -3.6643 12 7 2.0184 -0.6906 1.1961 13 6 1.9980 -0.0663 2.3904 14 8 1.5746 1.0704 2.4749 15 6 2.4906 -0.7622 3.5957 16 6 2.4679 -0.1117 4.8353 17 6 2.9261 -0.7484 5.9501 18 6 3.4136 -2.0668 5.8553 19 6 3.8845 -2.7319 7.0073 20 1 4.5701 -3.5607 6.9101 21 6 3.4621 -2.3168 8.2784 22 7 2.3318 -1.6758 8.4142 23 14 4.5156 -2.6803 9.7775 24 1 5.3824 -1.5102 10.0688 25 1 3.6387 -2.9496 10.9453 26 1 5.3633 -3.8699 9.5102 27 6 3.4345 -2.7173 4.6057 28 6 2.9785 -2.0707 3.4956 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.1293 -0.7563 -1.2294 33 1 1.6441 -1.7366 -1.2697 34 1 1.5288 1.8386 -1.4311 35 1 3.0154 1.5473 -2.3655 36 1 1.5913 3.2296 -3.4905 37 1 0.2434 2.0667 -3.5345 38 1 2.9620 1.7224 -4.8824 39 1 0.1566 2.1408 -6.0114 40 1 1.4667 3.3457 -6.0126 41 1 1.6285 1.8544 -6.9706 42 1 1.9884 -0.3514 -5.7983 43 1 0.4787 -0.0548 -4.9018 44 1 3.2392 -0.4714 -3.6665 45 1 1.9169 -1.6626 -3.6876 46 1 2.3565 -1.5974 1.1285 47 1 2.0909 0.8978 4.9076 48 1 2.9120 -0.2444 6.9052 49 1 2.0395 -1.3890 9.2935 50 1 3.8113 -3.7264 4.5274 51 1 2.9945 -2.5683 2.5372 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598261399.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:37 Heat of formation + Delta-G solvation = -37.953786 kcal Electronic energy + Delta-G solvation = -27735.081613 eV Core-core repulsion = 24018.697136 eV Total energy + Delta-G solvation = -3716.384477 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.83713 -38.93447 -37.22737 -35.92634 -33.92774 -33.83901 -31.32107 -30.74416 -29.88408 -29.24578 -28.31704 -25.98519 -25.33373 -23.55475 -22.63004 -21.87841 -21.06350 -20.25529 -19.76900 -19.59946 -17.53963 -16.91657 -16.41302 -15.59039 -15.39598 -14.98573 -14.90939 -14.60619 -14.33898 -14.29887 -14.00630 -13.75558 -13.56202 -13.28355 -12.89616 -12.76034 -12.63588 -12.41307 -12.23778 -12.19612 -11.97274 -11.93180 -11.72623 -11.44739 -11.39810 -11.27328 -11.23526 -10.99008 -10.94034 -10.84681 -10.64758 -10.53483 -10.23784 -10.06186 -9.54486 -9.28172 -8.93691 -8.58397 -8.48615 -7.69360 -7.60699 -7.08232 -4.58897 2.25774 2.90452 2.95940 2.98435 3.04277 3.43617 3.73135 3.88109 4.07789 4.46112 4.53001 4.54125 4.55934 4.72958 5.02416 5.04458 5.12959 5.17072 5.28099 5.34315 5.37434 5.40443 5.46399 5.57727 5.61372 5.63641 5.70536 5.77840 5.80249 5.85978 5.91182 5.92571 5.94679 6.00486 6.11080 6.17944 6.27909 6.33691 6.51499 6.78852 6.82448 6.84840 6.90861 7.03048 7.08187 7.12370 7.43515 7.63212 7.78237 7.88595 8.04669 8.27960 8.42002 8.62237 8.75994 9.12006 9.84635 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.037694 B = 0.001905 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.640085 B =14692.766438 C =15028.248581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.145 3.855 3 H 0.080 0.920 4 C 0.049 3.951 5 N -0.528 5.528 6 C 0.044 3.956 7 C -0.110 4.110 8 C -0.096 4.096 9 C -0.145 4.145 10 C -0.110 4.110 11 C 0.055 3.945 12 N -0.740 5.740 13 C 0.574 3.426 14 O -0.573 6.573 15 C -0.287 4.287 16 C -0.033 4.033 17 C -0.189 4.189 18 C 0.128 3.872 19 C -0.444 4.444 20 H 0.086 0.914 21 C 0.077 3.923 22 N -0.760 5.760 23 Si 0.911 3.089 24 H -0.264 1.264 25 H -0.275 1.275 26 H -0.258 1.258 27 C -0.238 4.238 28 C -0.047 4.047 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.038 0.962 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.032 0.968 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.032 0.968 45 H 0.074 0.926 46 H 0.394 0.606 47 H 0.099 0.901 48 H 0.116 0.884 49 H 0.288 0.712 50 H 0.096 0.904 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.541 2.142 -20.466 20.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.040 3.960 3 H 0.098 0.902 4 C -0.079 4.079 5 N -0.254 5.254 6 C -0.084 4.084 7 C -0.148 4.148 8 C -0.114 4.114 9 C -0.203 4.203 10 C -0.148 4.148 11 C -0.072 4.072 12 N -0.393 5.393 13 C 0.369 3.631 14 O -0.454 6.454 15 C -0.292 4.292 16 C -0.052 4.052 17 C -0.208 4.208 18 C 0.125 3.875 19 C -0.471 4.471 20 H 0.104 0.896 21 C -0.146 4.146 22 N -0.382 5.382 23 Si 0.734 3.266 24 H -0.189 1.189 25 H -0.200 1.200 26 H -0.182 1.182 27 C -0.257 4.257 28 C -0.066 4.066 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.050 0.950 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.050 0.950 45 H 0.093 0.907 46 H 0.229 0.771 47 H 0.118 0.882 48 H 0.134 0.866 49 H 0.099 0.901 50 H 0.114 0.886 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.533 3.009 -20.271 20.550 hybrid contribution 1.424 -0.651 0.735 1.730 sum -0.108 2.358 -19.535 19.678 Atomic orbital electron populations 1.22059 0.94899 1.01887 1.02282 1.20824 0.94920 0.96786 0.83449 0.90199 1.22311 0.97925 0.98322 0.89342 1.61908 1.59509 1.02466 1.01480 1.22280 0.98209 0.88228 0.99666 1.21644 1.01314 0.98617 0.93236 1.21203 0.99909 0.95210 0.95100 1.21804 1.00871 1.00179 0.97423 1.21632 1.01852 0.94682 0.96593 1.22082 0.96511 0.98849 0.89802 1.45953 1.67477 1.18506 1.07390 1.18549 0.76449 0.85331 0.82792 1.90630 1.49378 1.19152 1.86278 1.18881 1.20346 0.97217 0.92727 1.20451 0.95412 0.97826 0.91560 1.20917 1.07163 0.95297 0.97399 1.17761 0.86702 0.91059 0.92022 1.19850 1.23017 1.14109 0.90094 0.89614 1.26127 0.94075 0.92859 1.01531 1.69784 1.16145 1.25482 1.26794 0.86250 0.80604 0.80294 0.79468 1.18893 1.19967 1.18181 1.20621 1.12104 0.99434 0.93552 1.20354 0.96430 0.93284 0.96529 0.92995 0.92215 0.91323 0.94383 0.90120 0.89589 0.94952 0.91604 0.90970 0.91692 0.92567 0.92785 0.92883 0.91722 0.90986 0.95005 0.90723 0.77116 0.88239 0.86621 0.90051 0.88566 0.89355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.12 37.16 0.34 -1.82 16 2 C 0.15 2.05 2.10 -67.93 -0.14 1.91 16 3 H 0.08 1.26 5.74 -51.93 -0.30 0.96 16 4 C 0.05 0.55 4.71 -3.82 -0.02 0.53 16 5 N -0.53 -5.36 4.10 -234.67 -0.96 -6.33 16 6 C 0.04 0.45 4.91 -3.83 -0.02 0.43 16 7 C -0.11 -0.94 5.38 -26.65 -0.14 -1.08 16 8 C -0.10 -0.72 2.79 -90.49 -0.25 -0.97 16 9 C -0.15 -0.93 9.21 37.16 0.34 -0.59 16 10 C -0.11 -0.82 5.38 -26.65 -0.14 -0.96 16 11 C 0.06 0.48 5.46 -3.83 -0.02 0.46 16 12 N -0.74 -12.18 5.11 -54.81 -0.28 -12.46 16 13 C 0.57 12.21 7.59 -12.42 -0.09 12.11 16 14 O -0.57 -13.73 15.53 5.29 0.08 -13.64 16 15 C -0.29 -6.59 5.89 -104.73 -0.62 -7.20 16 16 C -0.03 -0.82 9.52 -39.61 -0.38 -1.19 16 17 C -0.19 -4.84 8.67 -39.27 -0.34 -5.18 16 18 C 0.13 3.26 5.58 -106.80 -0.60 2.66 16 19 C -0.44 -11.02 9.01 -37.74 -0.34 -11.36 16 20 H 0.09 2.02 7.95 -52.49 -0.42 1.60 16 21 C 0.08 1.81 5.01 -17.31 -0.09 1.73 16 22 N -0.76 -18.55 11.19 55.56 0.62 -17.93 16 23 Si 0.91 17.30 29.62 -169.99 -5.04 12.27 16 24 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 25 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 26 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 27 C -0.24 -5.50 9.73 -39.27 -0.38 -5.88 16 28 C -0.05 -1.00 9.47 -39.61 -0.38 -1.37 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 1.00 7.52 -51.93 -0.39 0.61 16 31 H 0.07 0.87 7.48 -51.93 -0.39 0.48 16 32 H 0.04 0.43 8.13 -51.93 -0.42 0.00 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 0.99 5.62 -51.93 -0.29 0.70 16 35 H 0.03 0.34 8.14 -51.92 -0.42 -0.08 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 46 H 0.39 5.69 6.54 -40.82 -0.27 5.42 16 47 H 0.10 2.43 7.63 -52.49 -0.40 2.03 16 48 H 0.12 3.03 6.22 -52.49 -0.33 2.70 16 49 H 0.29 6.31 8.29 -40.82 -0.34 5.97 16 50 H 0.10 2.04 8.06 -52.48 -0.42 1.62 16 51 H 0.09 1.53 6.37 -52.49 -0.33 1.20 16 LS Contribution 397.79 15.07 5.99 5.99 Total: -1.00 -27.97 397.79 -11.44 -39.41 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -8.59 Total: 10.48 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: -3.27 Total: -17.78 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: -0.62 Total: -36.72 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: 0.08 Total: -13.64 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.04 Total: 12.27 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -27.97 -11.44 -39.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598261399.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.455 kcal (2) G-P(sol) polarization free energy of solvation -27.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds