Wall clock time and date at job start Tue Mar 31 2020 16:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.47083 * 2 1 4 4 C 1.53003 * 109.47043 * 240.00296 * 2 1 3 5 5 N 1.46898 * 109.46896 * 62.24865 * 4 2 1 6 6 C 1.46848 * 111.00085 * 51.20678 * 5 4 2 7 7 C 1.53034 * 109.52408 * 185.83677 * 6 5 4 8 8 C 1.53124 * 109.27766 * 300.82039 * 7 6 5 9 9 C 1.53002 * 109.57146 * 177.59221 * 8 7 6 10 10 C 1.53118 * 109.16134 * 57.65625 * 8 7 6 11 11 C 1.46849 * 111.00099 * 175.41314 * 5 4 2 12 12 N 1.46495 * 109.47086 * 120.00245 * 2 1 3 13 13 C 1.34780 * 120.00343 * 282.86896 * 12 2 1 14 14 O 1.21589 * 119.99355 * 359.97438 * 13 12 2 15 15 C 1.47634 * 120.00117 * 180.02562 * 13 12 2 16 16 C 1.40010 * 119.89612 * 180.02562 * 15 13 12 17 17 C 1.36315 * 120.10908 * 180.23325 * 16 15 13 18 18 C 1.40888 * 119.89062 * 359.51652 * 17 16 15 19 19 C 1.41110 * 120.10444 * 180.23138 * 18 17 16 20 20 H 1.08001 * 120.00402 * 202.31668 * 19 18 17 21 21 C 1.40235 * 119.99902 * 22.32422 * 19 18 17 22 22 N 1.30646 * 119.99989 * 24.00880 * 21 19 18 23 23 Si 1.86795 * 119.99668 * 204.01167 * 21 19 18 24 24 H 1.48504 * 109.46991 * 94.82075 * 23 21 19 25 25 H 1.48501 * 109.46929 * 214.81683 * 23 21 19 26 26 H 1.48499 * 109.47567 * 334.81764 * 23 21 19 27 27 C 1.40885 * 119.79360 * 0.47826 * 18 17 16 28 28 C 1.36320 * 119.89128 * 359.75415 * 27 18 17 29 29 H 1.08999 * 109.47129 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46858 * 299.99686 * 1 2 3 31 31 H 1.09000 * 109.47153 * 59.99678 * 1 2 3 32 32 H 1.08994 * 109.47017 * 182.25102 * 4 2 1 33 33 H 1.09003 * 109.46950 * 302.25096 * 4 2 1 34 34 H 1.09001 * 109.46502 * 305.85361 * 6 5 4 35 35 H 1.09009 * 109.46114 * 65.81984 * 6 5 4 36 36 H 1.09003 * 109.50314 * 180.88351 * 7 6 5 37 37 H 1.09000 * 109.50847 * 60.76256 * 7 6 5 38 38 H 1.09005 * 109.52438 * 297.74730 * 8 7 6 39 39 H 1.08994 * 109.47235 * 300.28279 * 9 8 7 40 40 H 1.08994 * 109.47595 * 60.28968 * 9 8 7 41 41 H 1.09002 * 109.46763 * 180.28321 * 9 8 7 42 42 H 1.09000 * 109.50291 * 182.40546 * 10 8 7 43 43 H 1.08998 * 109.50023 * 62.28657 * 10 8 7 44 44 H 1.08996 * 109.46484 * 294.18451 * 11 5 4 45 45 H 1.09003 * 109.45783 * 54.15820 * 11 5 4 46 46 H 0.97008 * 119.99733 * 102.86955 * 12 2 1 47 47 H 1.08002 * 119.94589 * 359.95197 * 16 15 13 48 48 H 1.08000 * 120.05750 * 179.74198 * 17 16 15 49 49 H 0.97000 * 120.00142 * 179.97438 * 22 21 19 50 50 H 1.08004 * 120.05491 * 179.73426 * 27 18 17 51 51 H 1.08000 * 119.94873 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 1.5953 0.0020 -2.4480 6 6 1.9318 1.4285 -2.3572 7 6 1.3281 2.1735 -3.5499 8 6 1.8817 1.5810 -4.8488 9 6 1.2370 2.2808 -6.0470 10 6 1.5597 0.0848 -4.8960 11 6 2.1568 -0.5995 -3.6643 12 7 2.0184 -0.6906 1.1961 13 6 1.9980 -0.0663 2.3904 14 8 1.5746 1.0704 2.4749 15 6 2.4906 -0.7622 3.5957 16 6 2.4679 -0.1117 4.8353 17 6 2.9261 -0.7484 5.9501 18 6 3.4136 -2.0668 5.8553 19 6 3.8845 -2.7319 7.0073 20 1 4.5701 -3.5607 6.9101 21 6 3.4621 -2.3168 8.2784 22 7 2.3318 -1.6758 8.4142 23 14 4.5156 -2.6803 9.7775 24 1 5.3824 -1.5102 10.0688 25 1 3.6387 -2.9496 10.9453 26 1 5.3633 -3.8699 9.5102 27 6 3.4345 -2.7173 4.6057 28 6 2.9785 -2.0707 3.4956 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.1293 -0.7563 -1.2294 33 1 1.6441 -1.7366 -1.2697 34 1 1.5288 1.8386 -1.4311 35 1 3.0154 1.5473 -2.3655 36 1 1.5913 3.2296 -3.4905 37 1 0.2434 2.0667 -3.5345 38 1 2.9620 1.7224 -4.8824 39 1 0.1566 2.1408 -6.0114 40 1 1.4667 3.3457 -6.0126 41 1 1.6285 1.8544 -6.9706 42 1 1.9884 -0.3514 -5.7983 43 1 0.4787 -0.0548 -4.9018 44 1 3.2392 -0.4714 -3.6665 45 1 1.9169 -1.6626 -3.6876 46 1 2.3565 -1.5974 1.1285 47 1 2.0909 0.8978 4.9076 48 1 2.9120 -0.2444 6.9052 49 1 2.0395 -1.3890 9.2935 50 1 3.8113 -3.7264 4.5274 51 1 2.9945 -2.5683 2.5372 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598261399.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:36 Heat of formation + Delta-G solvation = -52.590812 kcal Electronic energy + Delta-G solvation = -27735.716322 eV Core-core repulsion = 24018.697136 eV Total energy + Delta-G solvation = -3717.019186 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.05372 -40.15705 -38.93878 -37.07893 -35.71965 -34.93266 -32.53500 -31.83683 -31.57521 -30.80717 -29.15156 -27.69601 -26.32723 -24.32849 -23.96545 -23.12336 -22.64973 -21.44088 -21.22321 -20.50348 -19.36206 -18.51157 -17.53870 -17.12253 -16.50085 -16.06254 -15.97707 -15.72454 -15.66955 -15.45758 -15.13949 -15.01410 -14.86354 -14.69243 -14.40971 -14.00429 -13.79729 -13.65436 -13.47635 -13.27864 -13.18995 -13.00514 -12.85261 -12.78861 -12.63344 -12.55326 -12.39610 -12.34307 -12.10891 -11.89910 -11.77669 -11.51722 -11.36339 -11.16077 -11.08516 -11.02610 -10.66961 -10.06477 -9.56978 -9.45551 -9.29730 -8.85440 -6.47051 0.46007 1.15794 1.36470 1.42699 1.53110 2.11453 2.16618 2.24506 2.77047 3.06628 3.64250 3.69647 3.88710 3.88882 3.92679 4.06867 4.23140 4.31268 4.33289 4.37059 4.41162 4.43731 4.50781 4.59258 4.67865 4.70482 4.81043 4.84530 4.87320 4.91873 4.94473 4.95987 5.00816 5.04278 5.10000 5.16339 5.20176 5.24196 5.26802 5.30678 5.34009 5.36703 5.56442 5.57872 5.64274 5.79649 5.95140 6.02108 6.06229 6.14271 6.19412 6.54571 6.75296 6.75455 6.89833 7.48415 8.10968 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.037694 B = 0.001905 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.640085 B =14692.766438 C =15028.248581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.145 3.855 3 H 0.063 0.937 4 C 0.059 3.941 5 N -0.531 5.531 6 C 0.044 3.956 7 C -0.107 4.107 8 C -0.094 4.094 9 C -0.142 4.142 10 C -0.106 4.106 11 C 0.054 3.946 12 N -0.720 5.720 13 C 0.574 3.426 14 O -0.606 6.606 15 C -0.298 4.298 16 C -0.048 4.048 17 C -0.209 4.209 18 C 0.099 3.901 19 C -0.471 4.471 20 H 0.094 0.906 21 C 0.037 3.963 22 N -0.795 5.795 23 Si 0.986 3.014 24 H -0.263 1.263 25 H -0.266 1.266 26 H -0.250 1.250 27 C -0.248 4.248 28 C -0.035 4.035 29 H 0.061 0.939 30 H 0.026 0.974 31 H 0.082 0.918 32 H 0.041 0.959 33 H 0.097 0.903 34 H 0.068 0.932 35 H 0.027 0.973 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.061 0.939 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.031 0.969 45 H 0.085 0.915 46 H 0.408 0.592 47 H 0.089 0.911 48 H 0.099 0.901 49 H 0.297 0.703 50 H 0.116 0.884 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.177 0.393 -22.419 22.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.041 3.959 3 H 0.081 0.919 4 C -0.069 4.069 5 N -0.257 5.257 6 C -0.084 4.084 7 C -0.145 4.145 8 C -0.113 4.113 9 C -0.200 4.200 10 C -0.144 4.144 11 C -0.074 4.074 12 N -0.373 5.373 13 C 0.367 3.633 14 O -0.491 6.491 15 C -0.302 4.302 16 C -0.068 4.068 17 C -0.228 4.228 18 C 0.096 3.904 19 C -0.497 4.497 20 H 0.112 0.888 21 C -0.183 4.183 22 N -0.417 5.417 23 Si 0.806 3.194 24 H -0.188 1.188 25 H -0.190 1.190 26 H -0.173 1.173 27 C -0.268 4.268 28 C -0.054 4.054 29 H 0.081 0.919 30 H 0.045 0.955 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.115 0.885 34 H 0.086 0.914 35 H 0.045 0.955 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.098 0.902 43 H 0.087 0.913 44 H 0.049 0.951 45 H 0.103 0.897 46 H 0.245 0.755 47 H 0.107 0.893 48 H 0.117 0.883 49 H 0.108 0.892 50 H 0.134 0.866 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.817 1.231 -22.276 22.325 hybrid contribution 1.146 -0.065 1.244 1.693 sum 0.329 1.166 -21.032 21.067 Atomic orbital electron populations 1.21958 0.94692 1.02195 1.01319 1.20944 0.94986 0.96253 0.83749 0.91944 1.22195 0.98007 0.98586 0.88105 1.61948 1.59697 1.02298 1.01727 1.22244 0.97863 0.88626 0.99627 1.21621 1.00921 0.98740 0.93212 1.21192 0.99785 0.95467 0.94832 1.21770 1.00760 1.00209 0.97219 1.21618 1.01623 0.94444 0.96675 1.22171 0.96486 0.99444 0.89251 1.45752 1.66030 1.18857 1.06644 1.18370 0.76286 0.84869 0.83745 1.90614 1.50895 1.20627 1.86937 1.19151 1.20212 0.98131 0.92735 1.20523 0.95936 0.97685 0.92617 1.20841 1.08972 0.96024 0.97009 1.18136 0.87362 0.91179 0.93702 1.20163 1.23734 1.14915 0.90929 0.88845 1.27042 0.94827 0.92156 1.04277 1.69823 1.17649 1.26144 1.28122 0.85120 0.78650 0.80189 0.75467 1.18788 1.19004 1.17265 1.20902 1.12281 1.00365 0.93211 1.20696 0.94291 0.92316 0.98067 0.91946 0.95499 0.89910 0.94093 0.88467 0.91401 0.95467 0.91252 0.91388 0.91882 0.92603 0.92663 0.92019 0.90199 0.91340 0.95058 0.89682 0.75529 0.89269 0.88286 0.89191 0.86598 0.84779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.92 9.12 71.99 0.66 -3.26 16 2 C 0.15 3.94 2.10 45.00 0.09 4.03 16 3 H 0.06 1.97 5.74 -2.39 -0.01 1.95 16 4 C 0.06 1.18 4.71 86.30 0.41 1.58 16 5 N -0.53 -9.73 4.10 -896.36 -3.68 -13.41 16 6 C 0.04 0.86 4.91 86.32 0.42 1.29 16 7 C -0.11 -1.70 5.38 30.65 0.16 -1.54 16 8 C -0.09 -1.23 2.79 -10.71 -0.03 -1.26 16 9 C -0.14 -1.54 9.21 71.98 0.66 -0.87 16 10 C -0.11 -1.31 5.38 30.64 0.16 -1.14 16 11 C 0.05 0.78 5.46 86.32 0.47 1.25 16 12 N -0.72 -22.65 5.11 -445.58 -2.28 -24.92 16 13 C 0.57 24.40 7.59 86.72 0.66 25.06 16 14 O -0.61 -29.85 15.53 -4.00 -0.06 -29.91 16 15 C -0.30 -13.71 5.89 -19.94 -0.12 -13.82 16 16 C -0.05 -2.48 9.52 22.25 0.21 -2.27 16 17 C -0.21 -11.21 8.67 22.47 0.19 -11.02 16 18 C 0.10 5.17 5.58 -21.28 -0.12 5.05 16 19 C -0.47 -23.63 9.01 23.46 0.21 -23.42 16 20 H 0.09 4.38 7.95 -2.91 -0.02 4.36 16 21 C 0.04 1.76 5.01 85.35 0.43 2.19 16 22 N -0.79 -39.77 11.19 21.87 0.24 -39.52 16 23 Si 0.99 35.22 29.62 68.60 2.03 37.25 16 24 H -0.26 -9.29 7.11 99.48 0.71 -8.59 16 25 H -0.27 -9.02 7.11 99.48 0.71 -8.31 16 26 H -0.25 -8.49 7.11 99.48 0.71 -7.78 16 27 C -0.25 -11.29 9.73 22.47 0.22 -11.07 16 28 C -0.04 -1.44 9.47 22.25 0.21 -1.23 16 29 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.03 0.90 7.52 -2.39 -0.02 0.88 16 31 H 0.08 2.01 7.48 -2.39 -0.02 2.00 16 32 H 0.04 0.81 8.13 -2.39 -0.02 0.79 16 33 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.07 1.57 5.62 -2.39 -0.01 1.55 16 35 H 0.03 0.55 8.14 -2.38 -0.02 0.53 16 36 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 39 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 45 H 0.08 1.08 8.12 -2.39 -0.02 1.06 16 46 H 0.41 10.54 6.54 -92.70 -0.61 9.93 16 47 H 0.09 4.64 7.63 -2.91 -0.02 4.61 16 48 H 0.10 5.50 6.22 -2.91 -0.02 5.49 16 49 H 0.30 13.27 8.29 -92.71 -0.77 12.50 16 50 H 0.12 4.72 8.06 -2.91 -0.02 4.70 16 51 H 0.13 4.16 6.37 -2.91 -0.02 4.14 16 Total: -1.00 -62.66 397.79 1.48 -61.19 By element: Atomic # 1 Polarization: 39.47 SS G_CDS: 0.31 Total: 39.78 kcal Atomic # 6 Polarization: -35.37 SS G_CDS: 4.91 Total: -30.45 kcal Atomic # 7 Polarization: -72.14 SS G_CDS: -5.71 Total: -77.85 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: -0.06 Total: -29.91 kcal Atomic # 14 Polarization: 35.22 SS G_CDS: 2.03 Total: 37.25 kcal Total: -62.66 1.48 -61.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598261399.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.597 kcal (2) G-P(sol) polarization free energy of solvation -62.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds