Wall clock time and date at job start Tue Mar 31 2020 16:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47592 * 2 1 4 4 C 1.52997 * 109.46991 * 239.99657 * 2 1 3 5 5 C 1.50696 * 109.47055 * 60.00330 * 4 2 1 6 6 H 1.08000 * 120.00290 * 0.02562 * 5 4 2 7 7 C 1.37887 * 120.00079 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99685 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00129 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.46672 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46691 * 119.99941 * 9 7 5 12 12 H 1.48497 * 109.47025 * 240.00323 * 9 7 5 13 13 C 1.53006 * 109.46626 * 120.00035 * 2 1 3 14 14 N 1.46496 * 109.46995 * 299.99666 * 13 2 1 15 15 C 1.34775 * 119.99642 * 180.02562 * 14 13 2 16 16 O 1.21582 * 120.00311 * 359.97438 * 15 14 13 17 17 N 1.34783 * 119.99947 * 180.02562 * 15 14 13 18 18 C 1.47068 * 136.05618 * 359.62445 * 17 15 14 19 19 C 1.53747 * 87.88876 * 152.96677 * 18 17 15 20 20 C 1.53004 * 114.39457 * 272.67947 * 19 18 17 21 21 C 1.50703 * 114.09222 * 139.78115 * 19 18 17 22 22 C 1.38234 * 119.99760 * 266.29113 * 21 19 18 23 23 C 1.38232 * 119.99816 * 179.73773 * 22 21 19 24 24 C 1.38241 * 119.99822 * 0.52934 * 23 22 21 25 25 C 1.38231 * 119.99951 * 359.74925 * 24 23 22 26 26 C 1.38229 * 119.99820 * 86.55691 * 21 19 18 27 27 C 1.47067 * 136.05697 * 180.02562 * 17 15 14 28 28 H 1.09000 * 109.47160 * 300.00333 * 1 2 3 29 29 H 1.09002 * 109.46719 * 60.00054 * 1 2 3 30 30 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46777 * 300.00227 * 3 2 1 33 33 H 1.09000 * 109.47140 * 59.99654 * 3 2 1 34 34 H 1.09001 * 109.47289 * 180.02562 * 4 2 1 35 35 H 1.09004 * 109.47261 * 300.00382 * 4 2 1 36 36 H 0.96999 * 119.99910 * 179.97438 * 8 7 5 37 37 H 1.09001 * 109.46801 * 59.99811 * 13 2 1 38 38 H 1.09001 * 109.46998 * 179.97438 * 13 2 1 39 39 H 0.96998 * 120.00192 * 359.97438 * 14 13 2 40 40 H 1.08997 * 113.46957 * 267.69866 * 18 17 15 41 41 H 1.08997 * 113.46722 * 38.13822 * 18 17 15 42 42 H 1.09008 * 109.47388 * 153.58541 * 20 19 18 43 43 H 1.09002 * 109.47020 * 273.58446 * 20 19 18 44 44 H 1.08994 * 109.47605 * 33.58384 * 20 19 18 45 45 H 1.07997 * 120.00280 * 359.97438 * 22 21 19 46 46 H 1.07999 * 120.00238 * 180.29524 * 23 22 21 47 47 H 1.08002 * 119.99573 * 179.76412 * 24 23 22 48 48 H 1.07996 * 119.99978 * 180.02562 * 25 24 23 49 49 H 1.07997 * 120.00057 * 0.02562 * 26 21 19 50 50 H 1.08993 * 113.46849 * 321.85679 * 27 17 15 51 51 H 1.09000 * 113.46954 * 92.30369 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4796 6 1 0.9172 0.8674 -2.3806 7 6 1.8712 -0.4818 -3.7320 8 7 2.6272 -1.5511 -3.8526 9 14 1.2492 0.3992 -5.2572 10 1 0.4246 1.5663 -4.8530 11 1 2.4046 0.8659 -6.0649 12 1 0.4243 -0.5339 -6.0660 13 6 2.0399 -0.7213 1.2493 14 7 1.5516 -0.0306 2.4454 15 6 1.8775 -0.4908 3.6695 16 8 2.5764 -1.4794 3.7811 17 7 1.4278 0.1443 4.7700 18 6 0.5984 1.3271 5.0454 19 6 0.2012 0.6682 6.3765 20 6 -1.0064 -0.2667 6.2832 21 6 0.1297 1.6245 7.5390 22 6 1.2282 1.7977 8.3601 23 6 1.1645 2.6789 9.4232 24 6 -0.0014 3.3788 9.6718 25 6 -1.1018 3.2013 8.8542 26 6 -1.0361 2.3244 7.7876 27 6 1.5565 -0.0365 6.2238 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 3.1300 -0.7217 -1.2490 35 1 1.6765 -1.7490 -1.2492 36 1 2.8615 -1.8826 -4.7335 37 1 1.6764 -1.7489 1.2493 38 1 3.1299 -0.7217 1.2492 39 1 0.9943 0.7583 2.3564 40 1 1.1761 2.2430 5.1698 41 1 -0.2343 1.4444 4.3519 42 1 -0.9462 -1.0177 7.0710 43 1 -1.9232 0.3111 6.4013 44 1 -1.0103 -0.7594 5.3111 45 1 2.1376 1.2473 8.1687 46 1 2.0243 2.8177 10.0618 47 1 -0.0524 4.0644 10.5047 48 1 -2.0125 3.7484 9.0481 49 1 -1.8959 2.1856 7.1489 50 1 1.5401 -1.0811 6.5345 51 1 2.3866 0.5201 6.6587 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598656542.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:03 Heat of formation + Delta-G solvation = 21.424760 kcal Electronic energy + Delta-G solvation = -28065.443254 eV Core-core repulsion = 24351.633625 eV Total energy + Delta-G solvation = -3713.809630 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.27786 -39.42299 -38.25553 -36.87412 -33.55745 -32.79120 -31.97604 -31.34931 -29.62556 -27.73834 -26.96977 -26.50198 -26.44014 -25.49263 -23.40141 -22.78376 -22.46332 -20.25206 -19.13017 -18.57549 -17.72303 -17.18285 -16.37283 -16.10164 -15.97785 -15.31779 -15.11969 -14.65268 -14.55906 -14.29959 -14.07279 -13.89886 -13.56033 -13.54132 -13.29805 -12.94606 -12.82320 -12.72556 -12.41852 -12.19677 -12.06251 -12.05528 -11.98012 -11.41295 -11.20884 -11.14012 -11.01860 -10.83097 -10.72318 -10.63696 -10.38672 -10.22938 -10.00567 -9.86716 -9.27753 -9.19906 -9.06726 -8.93148 -8.90682 -8.44412 -8.35508 -5.99327 -4.00481 0.96889 1.04588 2.51682 3.30382 3.35730 3.38392 3.39446 3.40751 3.86036 4.05848 4.34782 4.45631 4.49350 4.54049 4.64350 4.75737 4.83293 5.09203 5.13787 5.16652 5.20489 5.31626 5.36170 5.47743 5.48463 5.51833 5.58680 5.61140 5.65722 5.68395 5.72291 5.76566 5.89504 6.13710 6.17048 6.18968 6.23937 6.24973 6.31049 6.42532 6.61351 6.63163 6.63872 6.82540 7.07534 7.08397 7.14739 7.31509 7.65624 7.77755 7.99534 8.17990 8.41431 8.80000 9.04508 9.62470 11.12141 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.025003 B = 0.002092 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.583020 B =13384.236379 C =13852.946726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.072 4.072 3 C -0.126 4.126 4 C 0.036 3.964 5 C -0.510 4.510 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.147 3.853 14 N -0.733 5.733 15 C 0.732 3.268 16 O -0.590 6.590 17 N -0.666 5.666 18 C 0.113 3.887 19 C -0.061 4.061 20 C -0.121 4.121 21 C -0.063 4.063 22 C -0.118 4.118 23 C -0.117 4.117 24 C -0.124 4.124 25 C -0.118 4.118 26 C -0.110 4.110 27 C 0.132 3.868 28 H 0.027 0.973 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.067 0.933 33 H 0.027 0.973 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.259 0.741 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.393 0.607 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.126 0.874 46 H 0.122 0.878 47 H 0.120 0.880 48 H 0.121 0.879 49 H 0.124 0.876 50 H 0.080 0.920 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.893 10.064 27.451 30.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.072 4.072 3 C -0.183 4.183 4 C -0.002 4.002 5 C -0.548 4.548 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 C 0.024 3.976 14 N -0.388 5.388 15 C 0.435 3.565 16 O -0.468 6.468 17 N -0.407 5.407 18 C -0.010 4.010 19 C -0.062 4.062 20 C -0.178 4.178 21 C -0.063 4.063 22 C -0.136 4.136 23 C -0.135 4.135 24 C -0.142 4.142 25 C -0.136 4.136 26 C -0.128 4.128 27 C 0.008 3.992 28 H 0.046 0.954 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.046 0.954 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.228 0.772 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.144 0.856 46 H 0.140 0.860 47 H 0.138 0.862 48 H 0.139 0.861 49 H 0.142 0.858 50 H 0.099 0.901 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.188 9.061 27.129 29.491 hybrid contribution -0.435 0.898 -0.968 1.391 sum -7.623 9.959 26.160 29.011 Atomic orbital electron populations 1.21747 0.95313 1.01142 1.00091 1.20912 0.95462 0.95858 0.95003 1.21749 1.00543 0.95920 1.00096 1.19094 0.96401 0.95254 0.89417 1.21216 1.31079 1.12018 0.90489 0.92215 1.25030 0.95357 0.95117 0.99113 1.69979 1.36993 1.23047 1.23314 0.86585 0.78582 0.79657 0.83444 1.19821 1.21154 1.21147 1.21514 0.98669 0.95656 0.81781 1.45307 1.56142 1.33116 1.04186 1.15295 0.79546 0.82352 0.79285 1.90923 1.42816 1.27731 1.85288 1.48513 1.56177 1.30691 1.05276 1.23082 0.93941 0.89863 0.94142 1.21156 0.96639 0.95556 0.92852 1.21521 0.95127 0.98256 1.02928 1.19437 0.94139 0.97051 0.95706 1.21181 0.98404 0.98810 0.95181 1.21159 0.98055 0.96621 0.97673 1.21182 0.93466 0.99839 0.99698 1.21155 0.98634 0.98512 0.95342 1.21011 0.97513 0.96539 0.97741 1.22972 0.95588 1.01543 0.79088 0.95411 0.91459 0.93346 0.93362 0.91451 0.95411 0.96296 0.96286 0.93104 0.91990 0.92006 0.77199 0.89857 0.90340 0.91675 0.91691 0.91514 0.85581 0.86022 0.86209 0.86053 0.85834 0.90147 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 2 C -0.07 -1.39 0.54 -154.51 -0.08 -1.47 16 3 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 4 C 0.04 0.89 4.04 -27.89 -0.11 0.77 16 5 C -0.51 -13.58 7.65 -34.44 -0.26 -13.84 16 6 H 0.06 1.53 5.68 -52.49 -0.30 1.23 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 9 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 10 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.15 2.72 4.56 -4.04 -0.02 2.70 16 14 N -0.73 -11.51 4.96 -65.22 -0.32 -11.84 16 15 C 0.73 12.22 8.79 -86.91 -0.76 11.46 16 16 O -0.59 -12.39 17.12 5.29 0.09 -12.30 16 17 N -0.67 -8.25 3.49 -190.79 -0.67 -8.92 16 18 C 0.11 0.99 7.40 -8.37 -0.06 0.93 16 19 C -0.06 -0.48 1.34 -155.00 -0.21 -0.68 16 20 C -0.12 -0.91 9.11 37.16 0.34 -0.57 16 21 C -0.06 -0.46 5.10 -104.63 -0.53 -0.99 16 22 C -0.12 -0.83 9.22 -39.58 -0.36 -1.20 16 23 C -0.12 -0.76 10.05 -39.58 -0.40 -1.16 16 24 C -0.12 -0.77 10.05 -39.58 -0.40 -1.17 16 25 C -0.12 -0.74 10.05 -39.58 -0.40 -1.14 16 26 C -0.11 -0.74 9.23 -39.58 -0.37 -1.10 16 27 C 0.13 1.29 7.25 -8.49 -0.06 1.23 16 28 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 29 H 0.07 1.28 6.62 -51.93 -0.34 0.93 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 33 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.39 5.33 5.88 -40.82 -0.24 5.09 16 40 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 41 H 0.08 0.62 8.12 -51.93 -0.42 0.20 16 42 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 43 H 0.06 0.40 6.70 -51.93 -0.35 0.05 16 44 H 0.07 0.61 7.93 -51.93 -0.41 0.20 16 45 H 0.13 0.78 5.81 -52.49 -0.30 0.48 16 46 H 0.12 0.59 8.06 -52.49 -0.42 0.16 16 47 H 0.12 0.53 8.06 -52.49 -0.42 0.11 16 48 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 49 H 0.12 0.67 6.97 -52.49 -0.37 0.31 16 50 H 0.08 0.83 8.12 -51.93 -0.42 0.41 16 51 H 0.08 0.71 5.98 -51.93 -0.31 0.40 16 LS Contribution 401.36 15.07 6.05 6.05 Total: -1.00 -32.71 401.36 -10.63 -43.34 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -8.31 Total: 1.89 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -3.19 Total: -8.68 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: -0.25 Total: -46.54 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.09 Total: -12.30 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.71 -10.63 -43.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598656542.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.770 kcal (2) G-P(sol) polarization free energy of solvation -32.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds