Wall clock time and date at job start Tue Mar 31 2020 16:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47592 * 2 1 4 4 C 1.52997 * 109.46991 * 239.99657 * 2 1 3 5 5 C 1.50696 * 109.47055 * 60.00330 * 4 2 1 6 6 H 1.08000 * 120.00290 * 0.02562 * 5 4 2 7 7 C 1.37887 * 120.00079 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99685 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00129 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.46672 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46691 * 119.99941 * 9 7 5 12 12 H 1.48497 * 109.47025 * 240.00323 * 9 7 5 13 13 C 1.53006 * 109.46626 * 120.00035 * 2 1 3 14 14 N 1.46496 * 109.46995 * 299.99666 * 13 2 1 15 15 C 1.34775 * 119.99642 * 180.02562 * 14 13 2 16 16 O 1.21582 * 120.00311 * 359.97438 * 15 14 13 17 17 N 1.34783 * 119.99947 * 180.02562 * 15 14 13 18 18 C 1.47068 * 136.05618 * 359.62445 * 17 15 14 19 19 C 1.53747 * 87.88876 * 152.96677 * 18 17 15 20 20 C 1.53004 * 114.39457 * 272.67947 * 19 18 17 21 21 C 1.50703 * 114.09222 * 139.78115 * 19 18 17 22 22 C 1.38234 * 119.99760 * 266.29113 * 21 19 18 23 23 C 1.38232 * 119.99816 * 179.73773 * 22 21 19 24 24 C 1.38241 * 119.99822 * 0.52934 * 23 22 21 25 25 C 1.38231 * 119.99951 * 359.74925 * 24 23 22 26 26 C 1.38229 * 119.99820 * 86.55691 * 21 19 18 27 27 C 1.47067 * 136.05697 * 180.02562 * 17 15 14 28 28 H 1.09000 * 109.47160 * 300.00333 * 1 2 3 29 29 H 1.09002 * 109.46719 * 60.00054 * 1 2 3 30 30 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46777 * 300.00227 * 3 2 1 33 33 H 1.09000 * 109.47140 * 59.99654 * 3 2 1 34 34 H 1.09001 * 109.47289 * 180.02562 * 4 2 1 35 35 H 1.09004 * 109.47261 * 300.00382 * 4 2 1 36 36 H 0.96999 * 119.99910 * 179.97438 * 8 7 5 37 37 H 1.09001 * 109.46801 * 59.99811 * 13 2 1 38 38 H 1.09001 * 109.46998 * 179.97438 * 13 2 1 39 39 H 0.96998 * 120.00192 * 359.97438 * 14 13 2 40 40 H 1.08997 * 113.46957 * 267.69866 * 18 17 15 41 41 H 1.08997 * 113.46722 * 38.13822 * 18 17 15 42 42 H 1.09008 * 109.47388 * 153.58541 * 20 19 18 43 43 H 1.09002 * 109.47020 * 273.58446 * 20 19 18 44 44 H 1.08994 * 109.47605 * 33.58384 * 20 19 18 45 45 H 1.07997 * 120.00280 * 359.97438 * 22 21 19 46 46 H 1.07999 * 120.00238 * 180.29524 * 23 22 21 47 47 H 1.08002 * 119.99573 * 179.76412 * 24 23 22 48 48 H 1.07996 * 119.99978 * 180.02562 * 25 24 23 49 49 H 1.07997 * 120.00057 * 0.02562 * 26 21 19 50 50 H 1.08993 * 113.46849 * 321.85679 * 27 17 15 51 51 H 1.09000 * 113.46954 * 92.30369 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4796 6 1 0.9172 0.8674 -2.3806 7 6 1.8712 -0.4818 -3.7320 8 7 2.6272 -1.5511 -3.8526 9 14 1.2492 0.3992 -5.2572 10 1 0.4246 1.5663 -4.8530 11 1 2.4046 0.8659 -6.0649 12 1 0.4243 -0.5339 -6.0660 13 6 2.0399 -0.7213 1.2493 14 7 1.5516 -0.0306 2.4454 15 6 1.8775 -0.4908 3.6695 16 8 2.5764 -1.4794 3.7811 17 7 1.4278 0.1443 4.7700 18 6 0.5984 1.3271 5.0454 19 6 0.2012 0.6682 6.3765 20 6 -1.0064 -0.2667 6.2832 21 6 0.1297 1.6245 7.5390 22 6 1.2282 1.7977 8.3601 23 6 1.1645 2.6789 9.4232 24 6 -0.0014 3.3788 9.6718 25 6 -1.1018 3.2013 8.8542 26 6 -1.0361 2.3244 7.7876 27 6 1.5565 -0.0365 6.2238 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 3.1300 -0.7217 -1.2490 35 1 1.6765 -1.7490 -1.2492 36 1 2.8615 -1.8826 -4.7335 37 1 1.6764 -1.7489 1.2493 38 1 3.1299 -0.7217 1.2492 39 1 0.9943 0.7583 2.3564 40 1 1.1761 2.2430 5.1698 41 1 -0.2343 1.4444 4.3519 42 1 -0.9462 -1.0177 7.0710 43 1 -1.9232 0.3111 6.4013 44 1 -1.0103 -0.7594 5.3111 45 1 2.1376 1.2473 8.1687 46 1 2.0243 2.8177 10.0618 47 1 -0.0524 4.0644 10.5047 48 1 -2.0125 3.7484 9.0481 49 1 -1.8959 2.1856 7.1489 50 1 1.5401 -1.0811 6.5345 51 1 2.3866 0.5201 6.6587 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598656542.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:02 Heat of formation + Delta-G solvation = 3.553231 kcal Electronic energy + Delta-G solvation = -28066.218222 eV Core-core repulsion = 24351.633625 eV Total energy + Delta-G solvation = -3714.584597 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.10645 -40.46623 -39.16306 -38.34033 -35.23526 -34.06887 -33.32216 -31.81718 -30.27304 -29.19664 -28.48266 -27.97408 -27.23574 -26.80526 -24.77870 -23.77405 -23.11847 -21.37541 -20.16189 -19.62387 -18.90775 -18.36759 -17.96414 -17.31260 -16.86781 -16.48354 -16.03731 -15.90622 -15.68368 -15.39356 -15.13107 -14.96410 -14.64149 -14.44282 -14.35610 -14.19013 -13.94877 -13.86779 -13.81989 -13.39100 -12.96734 -12.87747 -12.74950 -12.71332 -12.67771 -12.59701 -12.35343 -12.23337 -11.96978 -11.93363 -11.84601 -11.55150 -11.35786 -11.32304 -10.98610 -10.85048 -10.51907 -10.27223 -9.73908 -9.59466 -9.50671 -8.13549 -6.21381 0.48564 0.58564 1.41057 1.42401 1.43900 1.55245 2.09817 2.44468 2.85349 2.92684 3.20861 3.27046 3.72641 3.79049 3.94852 3.97787 4.07773 4.19617 4.21385 4.25525 4.35079 4.41468 4.49557 4.54194 4.67561 4.68074 4.69361 4.71425 4.73057 4.80761 4.89023 4.94760 4.95199 5.00575 5.09898 5.11457 5.19066 5.24777 5.30941 5.38384 5.47751 5.49368 5.52703 5.58184 5.67163 5.72361 5.74470 5.79789 5.90120 6.17576 6.21468 6.31168 6.93386 6.99875 7.46159 7.53443 8.99215 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.025003 B = 0.002092 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.583020 B =13384.236379 C =13852.946726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.063 4.063 3 C -0.120 4.120 4 C 0.040 3.960 5 C -0.511 4.511 6 H 0.074 0.926 7 C -0.008 4.008 8 N -0.939 5.939 9 Si 0.961 3.039 10 H -0.256 1.256 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.162 3.838 14 N -0.720 5.720 15 C 0.727 3.273 16 O -0.642 6.642 17 N -0.667 5.667 18 C 0.113 3.887 19 C -0.041 4.041 20 C -0.121 4.121 21 C -0.070 4.070 22 C -0.130 4.130 23 C -0.127 4.127 24 C -0.130 4.130 25 C -0.125 4.125 26 C -0.115 4.115 27 C 0.122 3.878 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.037 0.963 31 H 0.036 0.964 32 H 0.058 0.942 33 H 0.066 0.934 34 H -0.014 1.014 35 H -0.014 1.014 36 H 0.259 0.741 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.408 0.592 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.065 0.935 43 H 0.084 0.916 44 H 0.048 0.952 45 H 0.129 0.871 46 H 0.134 0.866 47 H 0.136 0.864 48 H 0.139 0.861 49 H 0.137 0.863 50 H 0.069 0.931 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.131 13.163 29.004 33.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.063 4.063 3 C -0.177 4.177 4 C 0.002 3.998 5 C -0.549 4.549 6 H 0.092 0.908 7 C -0.205 4.205 8 N -0.580 5.580 9 Si 0.786 3.214 10 H -0.179 1.179 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.037 3.963 14 N -0.376 5.376 15 C 0.430 3.570 16 O -0.524 6.524 17 N -0.406 5.406 18 C -0.009 4.009 19 C -0.042 4.042 20 C -0.178 4.178 21 C -0.071 4.071 22 C -0.147 4.147 23 C -0.145 4.145 24 C -0.148 4.148 25 C -0.143 4.143 26 C -0.133 4.133 27 C -0.001 4.001 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.004 0.996 35 H 0.005 0.995 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.245 0.755 40 H 0.115 0.885 41 H 0.112 0.888 42 H 0.084 0.916 43 H 0.102 0.898 44 H 0.068 0.932 45 H 0.147 0.853 46 H 0.152 0.848 47 H 0.154 0.846 48 H 0.157 0.843 49 H 0.155 0.845 50 H 0.088 0.912 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.474 12.228 28.732 32.631 hybrid contribution 0.270 -0.065 -1.299 1.329 sum -9.204 12.163 27.433 31.388 Atomic orbital electron populations 1.21672 0.93472 1.00969 1.01555 1.20707 0.96799 0.96282 0.92549 1.21675 0.99873 0.94610 1.01534 1.18973 0.94297 0.94242 0.92275 1.21610 1.30317 1.12030 0.90943 0.90792 1.25989 0.95724 0.95926 1.02830 1.70137 1.38827 1.25019 1.24018 0.85456 0.78007 0.78808 0.79120 1.17914 1.21130 1.21090 1.21085 0.97397 0.94969 0.82826 1.44941 1.56220 1.33246 1.03185 1.15432 0.79261 0.82111 0.80160 1.90883 1.45173 1.30179 1.86183 1.48527 1.55477 1.31492 1.05119 1.23360 0.93878 0.88907 0.94775 1.20949 0.95297 0.95106 0.92810 1.21530 0.95894 0.98414 1.01930 1.19357 0.94700 0.97381 0.95640 1.21313 0.98611 0.99221 0.95602 1.21392 0.98836 0.96510 0.97733 1.21477 0.93321 0.99846 1.00135 1.21434 0.99371 0.98435 0.95066 1.21199 0.97602 0.96374 0.98103 1.23267 0.97699 1.01602 0.77487 0.91462 0.92333 0.94426 0.94505 0.92312 0.91525 0.99597 0.99539 0.93204 0.93920 0.94000 0.75518 0.88467 0.88770 0.91634 0.89756 0.93242 0.85341 0.84769 0.84579 0.84318 0.84529 0.91234 0.88423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.06 8.05 71.98 0.58 -3.48 16 2 C -0.06 -2.43 0.54 -52.18 -0.03 -2.45 16 3 C -0.12 -4.09 8.05 71.98 0.58 -3.51 16 4 C 0.04 2.05 4.04 29.85 0.12 2.17 16 5 C -0.51 -27.47 7.65 25.60 0.20 -27.27 16 6 H 0.07 3.70 5.68 -2.91 -0.02 3.69 16 7 C -0.01 -0.45 5.46 84.66 0.46 0.01 16 8 N -0.94 -57.51 13.29 21.45 0.28 -57.23 16 9 Si 0.96 43.71 29.54 68.60 2.03 45.74 16 10 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 11 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 C 0.16 6.14 4.56 86.38 0.39 6.53 16 14 N -0.72 -21.93 4.96 -478.53 -2.37 -24.30 16 15 C 0.73 24.14 8.79 179.05 1.57 25.72 16 16 O -0.64 -27.84 17.12 -3.97 -0.07 -27.91 16 17 N -0.67 -15.70 3.49 -875.80 -3.06 -18.76 16 18 C 0.11 1.66 7.40 83.27 0.62 2.28 16 19 C -0.04 -0.55 1.34 -52.50 -0.07 -0.62 16 20 C -0.12 -1.58 9.11 71.98 0.66 -0.92 16 21 C -0.07 -0.85 5.10 -19.87 -0.10 -0.95 16 22 C -0.13 -1.59 9.22 22.27 0.21 -1.38 16 23 C -0.13 -1.38 10.05 22.27 0.22 -1.16 16 24 C -0.13 -1.28 10.05 22.27 0.22 -1.06 16 25 C -0.13 -1.20 10.05 22.27 0.22 -0.98 16 26 C -0.11 -1.20 9.23 22.27 0.21 -0.99 16 27 C 0.12 2.27 7.25 83.19 0.60 2.87 16 28 H 0.07 1.74 6.86 -2.39 -0.02 1.73 16 29 H 0.06 2.10 6.62 -2.39 -0.02 2.08 16 30 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.04 1.32 8.14 -2.39 -0.02 1.31 16 32 H 0.06 2.12 6.62 -2.39 -0.02 2.10 16 33 H 0.07 1.75 6.86 -2.39 -0.02 1.73 16 34 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 35 H -0.01 -0.79 8.14 -2.38 -0.02 -0.81 16 36 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 37 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.41 9.85 5.88 -92.71 -0.55 9.31 16 40 H 0.10 1.24 8.10 -2.39 -0.02 1.22 16 41 H 0.09 1.13 8.12 -2.39 -0.02 1.11 16 42 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 43 H 0.08 0.78 6.70 -2.39 -0.02 0.76 16 44 H 0.05 0.83 7.93 -2.39 -0.02 0.81 16 45 H 0.13 1.41 5.81 -2.91 -0.02 1.39 16 46 H 0.13 1.03 8.06 -2.91 -0.02 1.00 16 47 H 0.14 0.82 8.06 -2.91 -0.02 0.80 16 48 H 0.14 0.79 8.06 -2.91 -0.02 0.77 16 49 H 0.14 1.00 6.97 -2.91 -0.02 0.98 16 50 H 0.07 1.44 8.12 -2.39 -0.02 1.42 16 51 H 0.10 1.54 5.98 -2.39 -0.01 1.53 16 Total: -1.00 -73.93 401.36 3.85 -70.08 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 0.37 Total: 17.58 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: 6.66 Total: -5.20 kcal Atomic # 7 Polarization: -95.14 SS G_CDS: -5.15 Total: -100.29 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.07 Total: -27.91 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -73.93 3.85 -70.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598656542.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.634 kcal (2) G-P(sol) polarization free energy of solvation -73.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds