Wall clock time and date at job start Tue Mar 31 2020 16:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.51190 * 2 1 4 4 C 1.53235 * 109.49390 * 239.93398 * 2 1 3 5 5 N 1.47083 * 108.52001 * 293.86918 * 4 2 1 6 6 C 1.34771 * 120.88393 * 128.83686 * 5 4 2 7 7 O 1.21693 * 120.00272 * 174.35108 * 6 5 4 8 8 C 1.46375 * 119.99966 * 354.35199 * 6 5 4 9 9 H 1.07999 * 120.00366 * 335.80599 * 8 6 5 10 10 C 1.40057 * 120.00230 * 155.80725 * 8 6 5 11 11 N 1.30663 * 119.99996 * 182.92585 * 10 8 6 12 12 Si 1.86799 * 119.99658 * 2.92292 * 10 8 6 13 13 H 1.48504 * 109.47243 * 84.81133 * 12 10 8 14 14 H 1.48498 * 109.46963 * 204.81184 * 12 10 8 15 15 H 1.48498 * 109.47409 * 324.81589 * 12 10 8 16 16 C 1.47083 * 118.23443 * 308.81495 * 5 4 2 17 17 C 1.53006 * 109.62637 * 170.89601 * 16 5 4 18 18 C 1.52998 * 109.62661 * 291.47140 * 16 5 4 19 19 C 1.53241 * 108.52195 * 51.18604 * 16 5 4 20 20 N 1.46900 * 109.33764 * 306.16678 * 19 16 5 21 21 C 1.46895 * 110.99623 * 187.25247 * 20 19 16 22 22 C 1.50697 * 109.47413 * 45.70358 * 21 20 19 23 23 C 1.38231 * 120.00179 * 89.99457 * 22 21 20 24 24 C 1.38241 * 120.00125 * 179.97438 * 23 22 21 25 25 C 1.38232 * 119.99856 * 0.06507 * 24 23 22 26 26 C 1.38232 * 120.00022 * 359.91520 * 25 24 23 27 27 C 1.38235 * 120.00307 * 0.03955 * 26 25 24 28 28 H 1.09004 * 109.47160 * 299.93171 * 1 2 3 29 29 H 1.09003 * 109.47545 * 59.93193 * 1 2 3 30 30 H 1.08998 * 109.47373 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46948 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47196 * 300.06295 * 3 2 1 33 33 H 1.08999 * 109.47553 * 60.06689 * 3 2 1 34 34 H 1.09005 * 109.63021 * 53.57384 * 4 2 1 35 35 H 1.08996 * 109.63476 * 173.96303 * 4 2 1 36 36 H 0.97000 * 120.00260 * 179.97438 * 11 10 8 37 37 H 1.09000 * 109.47243 * 69.03971 * 17 16 5 38 38 H 1.08996 * 109.46718 * 189.04241 * 17 16 5 39 39 H 1.08997 * 109.46731 * 309.03842 * 17 16 5 40 40 H 1.08999 * 109.46878 * 60.00596 * 18 16 5 41 41 H 1.09003 * 109.47102 * 179.97438 * 18 16 5 42 42 H 1.09000 * 109.47792 * 300.00195 * 18 16 5 43 43 H 1.09001 * 109.48926 * 186.21299 * 19 16 5 44 44 H 1.08999 * 109.48949 * 66.12984 * 19 16 5 45 45 H 1.08997 * 109.47526 * 285.70172 * 21 20 19 46 46 H 1.09005 * 109.46718 * 165.69947 * 21 20 19 47 47 H 1.08001 * 120.00312 * 359.70029 * 23 22 21 48 48 H 1.08000 * 119.99882 * 179.97438 * 24 23 22 49 49 H 1.08006 * 119.99976 * 180.02562 * 25 24 23 50 50 H 1.08004 * 119.99646 * 180.02562 * 26 25 24 51 51 H 1.08001 * 120.00584 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4421 0.0000 4 6 2.0413 -0.7237 -1.2502 5 7 1.6652 -2.1425 -1.1553 6 6 1.0291 -2.7589 -2.1710 7 8 0.8169 -3.9560 -2.1190 8 6 0.5934 -1.9884 -3.3368 9 1 0.4142 -0.9272 -3.2466 10 6 0.4088 -2.6273 -4.5694 11 7 0.0754 -1.9303 -5.6231 12 14 0.6394 -4.4759 -4.7069 13 1 -0.6194 -5.1620 -4.3194 14 1 0.9846 -4.8288 -6.1074 15 1 1.7361 -4.9066 -3.8031 16 6 2.0023 -2.8708 0.0773 17 6 1.3310 -4.2456 0.0617 18 6 3.5199 -3.0366 0.1775 19 6 1.4924 -2.0625 1.2752 20 7 2.0202 -0.6937 1.1985 21 6 1.6968 0.0640 2.4146 22 6 1.9901 -0.7821 3.6267 23 6 3.2417 -0.7409 4.2120 24 6 3.5105 -1.5167 5.3241 25 6 2.5282 -2.3348 5.8501 26 6 1.2765 -2.3757 5.2650 27 6 1.0073 -1.5992 4.1534 28 1 -0.3634 0.5128 0.8906 29 1 -0.3634 0.5149 -0.8894 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1310 1.4413 -0.0005 32 1 1.6771 1.9566 -0.8894 33 1 1.6790 1.9559 0.8905 34 1 1.5888 -0.2836 -2.1389 35 1 3.1259 -0.6326 -1.3082 36 1 -0.0521 -2.3727 -6.4769 37 1 1.7969 -4.8689 -0.7015 38 1 1.4473 -4.7177 1.0372 39 1 0.2704 -4.1295 -0.1616 40 1 3.9922 -2.0545 0.1969 41 1 3.7669 -3.5762 1.0919 42 1 3.8820 -3.5970 -0.6845 43 1 1.8294 -2.5309 2.1999 44 1 0.4030 -2.0339 1.2574 45 1 0.6403 0.3320 2.4057 46 1 2.3013 0.9704 2.4495 47 1 4.0109 -0.1059 3.7979 48 1 4.4885 -1.4848 5.7812 49 1 2.7381 -2.9406 6.7192 50 1 0.5088 -3.0146 5.6762 51 1 0.0294 -1.6315 3.6960 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598912640.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:21 Heat of formation + Delta-G solvation = 9.959601 kcal Electronic energy + Delta-G solvation = -30858.745520 eV Core-core repulsion = 27144.438724 eV Total energy + Delta-G solvation = -3714.306796 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.54276 -39.11394 -37.45087 -34.76377 -33.88552 -32.71994 -31.48426 -30.98289 -29.78753 -27.55591 -26.98785 -26.55034 -26.16340 -24.82588 -23.85938 -22.62150 -21.09974 -21.05291 -19.08845 -17.52823 -16.85111 -16.66706 -15.95453 -15.61974 -15.43495 -15.27317 -14.76510 -14.49512 -14.24396 -14.13989 -13.92287 -13.49290 -13.47338 -12.90742 -12.76288 -12.65392 -12.39047 -12.32890 -12.09295 -12.04188 -11.72746 -11.55398 -11.38354 -11.33371 -11.30239 -11.17541 -11.08067 -10.93386 -10.79468 -10.66368 -10.55157 -10.32058 -10.21654 -10.14323 -9.39157 -8.98018 -8.97113 -8.83338 -8.06584 -7.48301 -7.26879 -6.56318 -4.76027 1.24741 1.33116 3.47158 3.50077 3.62451 3.77164 4.10436 4.22795 4.29812 4.55830 4.68382 4.77263 4.91354 5.02442 5.05738 5.20422 5.25441 5.30940 5.40456 5.42053 5.43759 5.58628 5.59564 5.65593 5.75506 5.79723 5.88955 5.93766 5.95103 6.00540 6.04650 6.08382 6.18027 6.25486 6.28194 6.33560 6.38828 6.42418 6.44030 6.48087 6.52089 6.56410 6.64124 6.66790 6.90784 6.93807 7.08026 7.17706 7.32876 7.36786 7.74455 7.95995 8.38182 8.79740 9.20063 10.08803 10.45372 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.018676 B = 0.004044 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.856170 B = 6921.684088 C = 7725.954605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.091 3.909 3 C -0.138 4.138 4 C 0.138 3.862 5 N -0.620 5.620 6 C 0.559 3.441 7 O -0.603 6.603 8 C -0.534 4.534 9 H 0.088 0.912 10 C 0.101 3.899 11 N -0.837 5.837 12 Si 0.954 3.046 13 H -0.280 1.280 14 H -0.323 1.323 15 H -0.253 1.253 16 C 0.178 3.822 17 C -0.122 4.122 18 C -0.142 4.142 19 C 0.048 3.952 20 N -0.515 5.515 21 C 0.087 3.913 22 C -0.075 4.075 23 C -0.100 4.100 24 C -0.123 4.123 25 C -0.124 4.124 26 C -0.122 4.122 27 C -0.113 4.113 28 H 0.045 0.955 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.100 0.900 35 H 0.054 0.946 36 H 0.280 0.720 37 H 0.080 0.920 38 H 0.023 0.977 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.048 0.952 42 H 0.049 0.951 43 H 0.080 0.920 44 H 0.038 0.962 45 H 0.044 0.956 46 H 0.083 0.917 47 H 0.122 0.878 48 H 0.119 0.881 49 H 0.118 0.882 50 H 0.119 0.881 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.155 5.246 19.027 20.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.001 3.999 3 C -0.196 4.196 4 C 0.014 3.986 5 N -0.354 5.354 6 C 0.368 3.632 7 O -0.495 6.495 8 C -0.570 4.570 9 H 0.106 0.894 10 C -0.115 4.115 11 N -0.468 5.468 12 Si 0.787 3.213 13 H -0.206 1.206 14 H -0.255 1.255 15 H -0.178 1.178 16 C 0.092 3.908 17 C -0.179 4.179 18 C -0.200 4.200 19 C -0.081 4.081 20 N -0.239 5.239 21 C -0.040 4.040 22 C -0.076 4.076 23 C -0.119 4.119 24 C -0.141 4.141 25 C -0.143 4.143 26 C -0.140 4.140 27 C -0.132 4.132 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.118 0.882 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.041 0.959 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.099 0.901 44 H 0.056 0.944 45 H 0.062 0.938 46 H 0.102 0.898 47 H 0.140 0.860 48 H 0.137 0.863 49 H 0.136 0.864 50 H 0.137 0.863 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.497 4.684 18.817 20.155 hybrid contribution -0.902 -0.532 -0.015 1.047 sum 4.595 4.153 18.802 19.796 Atomic orbital electron populations 1.22357 0.96600 1.02847 1.01423 1.21537 0.93153 0.93962 0.91227 1.21860 1.01687 0.94342 1.01747 1.21568 0.98875 0.81932 0.96235 1.47892 1.61493 1.09819 1.16175 1.18305 0.76425 0.86301 0.82210 1.90334 1.63672 1.16791 1.78659 1.20737 1.46460 0.97331 0.92499 0.89414 1.25684 0.89829 1.01584 0.94439 1.69537 1.37777 1.38690 1.00766 0.85480 0.81227 0.81654 0.72962 1.20625 1.25497 1.17835 1.20400 0.94273 0.92028 0.84075 1.22092 1.02137 0.94872 0.98805 1.21992 0.95861 1.01715 1.00431 1.22713 0.97493 0.88863 0.99027 1.62348 1.58872 1.02020 1.00612 1.21184 0.99623 0.95922 0.87301 1.19833 0.93991 0.97512 0.96218 1.21022 0.96126 0.99267 0.95438 1.21135 0.99129 0.97035 0.96768 1.21114 0.93667 0.99307 1.00165 1.21101 0.97078 0.99437 0.96349 1.21112 0.99195 0.96554 0.96299 0.93561 0.91639 0.91630 0.91830 0.91805 0.92802 0.88161 0.92785 0.91019 0.90120 0.95866 0.91823 0.91872 0.93301 0.93175 0.90148 0.94435 0.93793 0.89849 0.85961 0.86293 0.86424 0.86289 0.86451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.68 7.70 37.16 0.29 -2.39 16 2 C 0.09 1.34 0.69 -131.48 -0.09 1.25 16 3 C -0.14 -1.65 8.02 37.16 0.30 -1.35 16 4 C 0.14 2.50 4.79 -3.60 -0.02 2.48 16 5 N -0.62 -12.96 2.17 -159.32 -0.35 -13.30 16 6 C 0.56 14.27 7.00 -12.99 -0.09 14.18 16 7 O -0.60 -16.44 8.01 5.20 0.04 -16.40 16 8 C -0.53 -14.61 9.11 -35.63 -0.32 -14.93 16 9 H 0.09 2.41 6.44 -52.49 -0.34 2.07 16 10 C 0.10 2.84 5.52 -17.37 -0.10 2.75 16 11 N -0.84 -23.66 13.92 55.55 0.77 -22.89 16 12 Si 0.95 24.97 26.17 -169.99 -4.45 20.52 16 13 H -0.28 -7.49 7.11 56.52 0.40 -7.09 16 14 H -0.32 -8.17 7.11 56.52 0.40 -7.77 16 15 H -0.25 -6.93 6.26 56.52 0.35 -6.57 16 16 C 0.18 3.27 1.03 -131.37 -0.14 3.14 16 17 C -0.12 -2.40 6.94 37.16 0.26 -2.15 16 18 C -0.14 -2.40 8.50 37.16 0.32 -2.08 16 19 C 0.05 0.74 3.09 -3.70 -0.01 0.73 16 20 N -0.51 -7.12 4.05 -220.12 -0.89 -8.02 16 21 C 0.09 1.01 4.35 -4.98 -0.02 0.99 16 22 C -0.08 -0.86 4.12 -104.63 -0.43 -1.29 16 23 C -0.10 -1.06 9.70 -39.58 -0.38 -1.45 16 24 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 25 C -0.12 -1.19 10.05 -39.59 -0.40 -1.59 16 26 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 27 C -0.11 -1.27 7.77 -39.58 -0.31 -1.58 16 28 H 0.05 0.62 6.41 -51.93 -0.33 0.29 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.06 1.19 5.92 -51.93 -0.31 0.88 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.56 6.55 -51.93 -0.34 0.22 16 34 H 0.10 1.99 5.56 -51.93 -0.29 1.70 16 35 H 0.05 0.95 7.64 -51.93 -0.40 0.55 16 36 H 0.28 7.35 8.29 -40.82 -0.34 7.01 16 37 H 0.08 1.80 6.64 -51.93 -0.34 1.45 16 38 H 0.02 0.39 8.13 -51.93 -0.42 -0.03 16 39 H 0.06 1.39 6.91 -51.93 -0.36 1.03 16 40 H 0.06 1.04 7.08 -51.93 -0.37 0.67 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.08 1.21 5.54 -51.93 -0.29 0.92 16 44 H 0.04 0.63 6.10 -51.93 -0.32 0.31 16 45 H 0.04 0.52 6.09 -51.93 -0.32 0.21 16 46 H 0.08 0.88 6.79 -51.93 -0.35 0.53 16 47 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 48 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 49 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 50 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 51 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 LS Contribution 374.38 15.07 5.64 5.64 Total: -1.00 -29.97 374.38 -9.36 -39.33 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -8.18 Total: 1.64 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -1.95 Total: -6.53 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: -0.46 Total: -44.20 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: 0.04 Total: -16.40 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -4.45 Total: 20.52 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.97 -9.36 -39.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598912640.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.289 kcal (2) G-P(sol) polarization free energy of solvation -29.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds