Wall clock time and date at job start Tue Mar 31 2020 16:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.51190 * 2 1 4 4 C 1.53235 * 109.49390 * 239.93398 * 2 1 3 5 5 N 1.47083 * 108.52001 * 293.86918 * 4 2 1 6 6 C 1.34771 * 120.88393 * 128.83686 * 5 4 2 7 7 O 1.21693 * 120.00272 * 174.35108 * 6 5 4 8 8 C 1.46375 * 119.99966 * 354.35199 * 6 5 4 9 9 H 1.07999 * 120.00366 * 335.80599 * 8 6 5 10 10 C 1.40057 * 120.00230 * 155.80725 * 8 6 5 11 11 N 1.30663 * 119.99996 * 182.92585 * 10 8 6 12 12 Si 1.86799 * 119.99658 * 2.92292 * 10 8 6 13 13 H 1.48504 * 109.47243 * 84.81133 * 12 10 8 14 14 H 1.48498 * 109.46963 * 204.81184 * 12 10 8 15 15 H 1.48498 * 109.47409 * 324.81589 * 12 10 8 16 16 C 1.47083 * 118.23443 * 308.81495 * 5 4 2 17 17 C 1.53006 * 109.62637 * 170.89601 * 16 5 4 18 18 C 1.52998 * 109.62661 * 291.47140 * 16 5 4 19 19 C 1.53241 * 108.52195 * 51.18604 * 16 5 4 20 20 N 1.46900 * 109.33764 * 306.16678 * 19 16 5 21 21 C 1.46895 * 110.99623 * 187.25247 * 20 19 16 22 22 C 1.50697 * 109.47413 * 45.70358 * 21 20 19 23 23 C 1.38231 * 120.00179 * 89.99457 * 22 21 20 24 24 C 1.38241 * 120.00125 * 179.97438 * 23 22 21 25 25 C 1.38232 * 119.99856 * 0.06507 * 24 23 22 26 26 C 1.38232 * 120.00022 * 359.91520 * 25 24 23 27 27 C 1.38235 * 120.00307 * 0.03955 * 26 25 24 28 28 H 1.09004 * 109.47160 * 299.93171 * 1 2 3 29 29 H 1.09003 * 109.47545 * 59.93193 * 1 2 3 30 30 H 1.08998 * 109.47373 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46948 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47196 * 300.06295 * 3 2 1 33 33 H 1.08999 * 109.47553 * 60.06689 * 3 2 1 34 34 H 1.09005 * 109.63021 * 53.57384 * 4 2 1 35 35 H 1.08996 * 109.63476 * 173.96303 * 4 2 1 36 36 H 0.97000 * 120.00260 * 179.97438 * 11 10 8 37 37 H 1.09000 * 109.47243 * 69.03971 * 17 16 5 38 38 H 1.08996 * 109.46718 * 189.04241 * 17 16 5 39 39 H 1.08997 * 109.46731 * 309.03842 * 17 16 5 40 40 H 1.08999 * 109.46878 * 60.00596 * 18 16 5 41 41 H 1.09003 * 109.47102 * 179.97438 * 18 16 5 42 42 H 1.09000 * 109.47792 * 300.00195 * 18 16 5 43 43 H 1.09001 * 109.48926 * 186.21299 * 19 16 5 44 44 H 1.08999 * 109.48949 * 66.12984 * 19 16 5 45 45 H 1.08997 * 109.47526 * 285.70172 * 21 20 19 46 46 H 1.09005 * 109.46718 * 165.69947 * 21 20 19 47 47 H 1.08001 * 120.00312 * 359.70029 * 23 22 21 48 48 H 1.08000 * 119.99882 * 179.97438 * 24 23 22 49 49 H 1.08006 * 119.99976 * 180.02562 * 25 24 23 50 50 H 1.08004 * 119.99646 * 180.02562 * 26 25 24 51 51 H 1.08001 * 120.00584 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4421 0.0000 4 6 2.0413 -0.7237 -1.2502 5 7 1.6652 -2.1425 -1.1553 6 6 1.0291 -2.7589 -2.1710 7 8 0.8169 -3.9560 -2.1190 8 6 0.5934 -1.9884 -3.3368 9 1 0.4142 -0.9272 -3.2466 10 6 0.4088 -2.6273 -4.5694 11 7 0.0754 -1.9303 -5.6231 12 14 0.6394 -4.4759 -4.7069 13 1 -0.6194 -5.1620 -4.3194 14 1 0.9846 -4.8288 -6.1074 15 1 1.7361 -4.9066 -3.8031 16 6 2.0023 -2.8708 0.0773 17 6 1.3310 -4.2456 0.0617 18 6 3.5199 -3.0366 0.1775 19 6 1.4924 -2.0625 1.2752 20 7 2.0202 -0.6937 1.1985 21 6 1.6968 0.0640 2.4146 22 6 1.9901 -0.7821 3.6267 23 6 3.2417 -0.7409 4.2120 24 6 3.5105 -1.5167 5.3241 25 6 2.5282 -2.3348 5.8501 26 6 1.2765 -2.3757 5.2650 27 6 1.0073 -1.5992 4.1534 28 1 -0.3634 0.5128 0.8906 29 1 -0.3634 0.5149 -0.8894 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1310 1.4413 -0.0005 32 1 1.6771 1.9566 -0.8894 33 1 1.6790 1.9559 0.8905 34 1 1.5888 -0.2836 -2.1389 35 1 3.1259 -0.6326 -1.3082 36 1 -0.0521 -2.3727 -6.4769 37 1 1.7969 -4.8689 -0.7015 38 1 1.4473 -4.7177 1.0372 39 1 0.2704 -4.1295 -0.1616 40 1 3.9922 -2.0545 0.1969 41 1 3.7669 -3.5762 1.0919 42 1 3.8820 -3.5970 -0.6845 43 1 1.8294 -2.5309 2.1999 44 1 0.4030 -2.0339 1.2574 45 1 0.6403 0.3320 2.4057 46 1 2.3013 0.9704 2.4495 47 1 4.0109 -0.1059 3.7979 48 1 4.4885 -1.4848 5.7812 49 1 2.7381 -2.9406 6.7192 50 1 0.5088 -3.0146 5.6762 51 1 0.0294 -1.6315 3.6960 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598912640.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:20 Heat of formation + Delta-G solvation = -6.729731 kcal Electronic energy + Delta-G solvation = -30859.469224 eV Core-core repulsion = 27144.438724 eV Total energy + Delta-G solvation = -3715.030500 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.86190 -40.17345 -38.98598 -36.35909 -35.21007 -34.78077 -32.77023 -31.73773 -30.92862 -28.70950 -28.53458 -28.43082 -27.47834 -26.23949 -24.95603 -23.41593 -22.81190 -21.93336 -20.59847 -19.19460 -18.38396 -17.82435 -17.60983 -16.89605 -16.70214 -16.44464 -16.03962 -15.92856 -15.76253 -15.42602 -15.22146 -14.82832 -14.46431 -14.24721 -14.14631 -14.06906 -13.80072 -13.67315 -13.54506 -13.29901 -13.12880 -12.98389 -12.87597 -12.76497 -12.70042 -12.59692 -12.41253 -12.29638 -12.13598 -12.04343 -11.81828 -11.70301 -11.65868 -11.52674 -11.39657 -11.13704 -9.74497 -9.66039 -9.45866 -9.25796 -8.93890 -8.73283 -6.91953 0.47342 0.57771 1.33602 1.37138 1.63030 2.15204 2.32722 2.58860 2.79535 3.16893 3.32696 3.78528 3.79725 3.90268 4.00004 4.12291 4.13462 4.17908 4.22788 4.26907 4.34176 4.44210 4.61153 4.61336 4.65537 4.70267 4.71762 4.80667 4.81264 4.86691 4.88703 4.92489 4.94664 5.01156 5.03314 5.09522 5.13098 5.17286 5.19466 5.23553 5.27161 5.42767 5.45210 5.56082 5.63030 5.69507 5.75324 5.77671 6.05457 6.14145 6.15959 6.21915 6.33856 6.71505 7.22722 8.07451 8.33054 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.018676 B = 0.004044 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.856170 B = 6921.684088 C = 7725.954605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.099 3.901 3 C -0.132 4.132 4 C 0.134 3.866 5 N -0.617 5.617 6 C 0.557 3.443 7 O -0.625 6.625 8 C -0.548 4.548 9 H 0.078 0.922 10 C 0.070 3.930 11 N -0.861 5.861 12 Si 1.000 3.000 13 H -0.291 1.291 14 H -0.307 1.307 15 H -0.275 1.275 16 C 0.168 3.832 17 C -0.112 4.112 18 C -0.131 4.131 19 C 0.064 3.936 20 N -0.510 5.510 21 C 0.090 3.910 22 C -0.089 4.089 23 C -0.106 4.106 24 C -0.126 4.126 25 C -0.127 4.127 26 C -0.131 4.131 27 C -0.128 4.128 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.033 0.967 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.288 0.712 37 H 0.050 0.950 38 H 0.054 0.946 39 H 0.034 0.966 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.029 0.971 43 H 0.094 0.906 44 H 0.023 0.977 45 H 0.043 0.957 46 H 0.102 0.898 47 H 0.133 0.867 48 H 0.140 0.860 49 H 0.139 0.861 50 H 0.132 0.868 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.730 6.134 21.831 23.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.008 3.992 3 C -0.189 4.189 4 C 0.011 3.989 5 N -0.349 5.349 6 C 0.363 3.637 7 O -0.518 6.518 8 C -0.585 4.585 9 H 0.096 0.904 10 C -0.144 4.144 11 N -0.493 5.493 12 Si 0.833 3.167 13 H -0.218 1.218 14 H -0.237 1.237 15 H -0.201 1.201 16 C 0.084 3.916 17 C -0.170 4.170 18 C -0.189 4.189 19 C -0.065 4.065 20 N -0.234 5.234 21 C -0.036 4.036 22 C -0.089 4.089 23 C -0.125 4.125 24 C -0.144 4.144 25 C -0.145 4.145 26 C -0.149 4.149 27 C -0.146 4.146 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.053 0.947 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.048 0.952 43 H 0.112 0.888 44 H 0.041 0.959 45 H 0.061 0.939 46 H 0.120 0.880 47 H 0.151 0.849 48 H 0.158 0.842 49 H 0.157 0.843 50 H 0.149 0.851 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 7.088 5.607 21.636 23.447 hybrid contribution -1.381 -0.804 -0.747 1.764 sum 5.707 4.802 20.889 22.181 Atomic orbital electron populations 1.22291 0.97366 1.00897 1.02018 1.21425 0.92398 0.95332 0.90023 1.21818 1.02260 0.91996 1.02870 1.21700 0.99274 0.80467 0.97491 1.47820 1.59999 1.11118 1.15965 1.18187 0.76631 0.85948 0.82937 1.90328 1.64442 1.17547 1.79457 1.20927 1.46972 0.97171 0.93404 0.90410 1.26139 0.90116 1.03512 0.94656 1.69550 1.38946 1.39511 1.01270 0.84809 0.79637 0.79202 0.73092 1.21816 1.23707 1.20078 1.20674 0.95480 0.91559 0.83936 1.21892 1.00004 0.95673 0.99435 1.21885 0.94176 1.02180 1.00649 1.22459 0.96482 0.89800 0.97714 1.62328 1.58378 1.01324 1.01335 1.21230 0.99950 0.96256 0.86148 1.19832 0.94582 0.98056 0.96423 1.21218 0.95970 0.99549 0.95727 1.21444 1.00129 0.96423 0.96411 1.21434 0.93277 0.99200 1.00591 1.21337 0.97934 0.99445 0.96135 1.21192 0.99143 0.97261 0.97031 0.91168 0.92807 0.94803 0.90852 0.91816 0.90624 0.90441 0.91831 0.90222 0.93089 0.92686 0.94699 0.91016 0.91000 0.95205 0.88840 0.95901 0.93894 0.87973 0.84880 0.84197 0.84350 0.85050 0.87040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.08 7.70 71.98 0.55 -4.52 16 2 C 0.10 2.74 0.69 3.60 0.00 2.75 16 3 C -0.13 -2.77 8.02 71.98 0.58 -2.19 16 4 C 0.13 4.84 4.79 86.35 0.41 5.25 16 5 N -0.62 -26.14 2.17 -776.18 -1.69 -27.83 16 6 C 0.56 29.33 7.00 86.36 0.60 29.94 16 7 O -0.63 -35.22 8.01 -4.33 -0.03 -35.25 16 8 C -0.55 -31.00 9.11 24.83 0.23 -30.78 16 9 H 0.08 4.46 6.44 -2.91 -0.02 4.44 16 10 C 0.07 4.00 5.52 85.31 0.47 4.47 16 11 N -0.86 -49.47 13.92 21.84 0.30 -49.16 16 12 Si 1.00 52.76 26.17 68.60 1.79 54.56 16 13 H -0.29 -15.73 7.11 99.48 0.71 -15.03 16 14 H -0.31 -15.10 7.11 99.48 0.71 -14.40 16 15 H -0.27 -15.32 6.26 99.48 0.62 -14.69 16 16 C 0.17 6.10 1.03 3.57 0.00 6.10 16 17 C -0.11 -4.48 6.94 71.98 0.50 -3.98 16 18 C -0.13 -4.21 8.50 71.98 0.61 -3.60 16 19 C 0.06 1.91 3.09 86.38 0.27 2.17 16 20 N -0.51 -12.93 4.05 -850.31 -3.44 -16.38 16 21 C 0.09 1.84 4.35 85.56 0.37 2.21 16 22 C -0.09 -1.77 4.12 -19.87 -0.08 -1.85 16 23 C -0.11 -1.89 9.70 22.27 0.22 -1.67 16 24 C -0.13 -2.00 10.05 22.27 0.22 -1.78 16 25 C -0.13 -2.02 10.05 22.27 0.22 -1.80 16 26 C -0.13 -2.34 10.05 22.27 0.22 -2.12 16 27 C -0.13 -2.61 7.77 22.27 0.17 -2.43 16 28 H 0.07 1.77 6.41 -2.39 -0.02 1.75 16 29 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.03 1.23 5.92 -2.39 -0.01 1.22 16 31 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.07 1.29 6.55 -2.39 -0.02 1.28 16 34 H 0.08 3.16 5.56 -2.38 -0.01 3.15 16 35 H 0.06 2.17 7.64 -2.39 -0.02 2.15 16 36 H 0.29 15.25 8.29 -92.71 -0.77 14.48 16 37 H 0.05 2.32 6.64 -2.39 -0.02 2.30 16 38 H 0.05 1.80 8.13 -2.39 -0.02 1.78 16 39 H 0.03 1.56 6.91 -2.39 -0.02 1.54 16 40 H 0.07 2.18 7.08 -2.39 -0.02 2.17 16 41 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.09 2.58 5.54 -2.39 -0.01 2.57 16 44 H 0.02 0.76 6.10 -2.39 -0.01 0.74 16 45 H 0.04 0.90 6.09 -2.39 -0.01 0.88 16 46 H 0.10 1.73 6.79 -2.38 -0.02 1.72 16 47 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16 48 H 0.14 1.58 8.06 -2.91 -0.02 1.55 16 49 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 50 H 0.13 1.93 8.06 -2.91 -0.02 1.91 16 51 H 0.11 2.34 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -66.37 374.38 3.35 -63.02 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 0.83 Total: 14.88 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: 5.58 Total: -3.83 kcal Atomic # 7 Polarization: -88.54 SS G_CDS: -4.83 Total: -93.37 kcal Atomic # 8 Polarization: -35.22 SS G_CDS: -0.03 Total: -35.25 kcal Atomic # 14 Polarization: 52.76 SS G_CDS: 1.79 Total: 54.56 kcal Total: -66.37 3.35 -63.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598912640.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.290 kcal (2) G-P(sol) polarization free energy of solvation -66.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds