Wall clock time and date at job start Tue Mar 31 2020 16:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50701 * 109.47261 * 2 1 4 4 C 1.38233 * 120.00536 * 89.99576 * 3 2 1 5 5 C 1.38230 * 120.00477 * 179.97438 * 4 3 2 6 6 C 1.38241 * 119.99975 * 0.02688 * 5 4 3 7 7 C 1.50694 * 120.00191 * 179.97438 * 6 5 4 8 8 C 1.53041 * 109.46108 * 119.99844 * 7 6 5 9 9 C 1.53189 * 109.31621 * 181.38746 * 8 7 6 10 10 N 1.46933 * 108.77196 * 305.36698 * 9 8 7 11 11 C 1.34779 * 120.62793 * 233.58162 * 10 9 8 12 12 O 1.21586 * 119.99900 * 5.22563 * 11 10 9 13 13 N 1.34778 * 119.99935 * 185.21977 * 11 10 9 14 14 C 1.46502 * 119.99582 * 175.01517 * 13 11 10 15 15 C 1.53000 * 109.46534 * 180.02562 * 14 13 11 16 16 C 1.50704 * 109.46817 * 179.97438 * 15 14 13 17 17 H 1.07991 * 120.00260 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99579 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00586 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99736 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46897 * 89.99688 * 20 18 16 22 22 H 1.48493 * 109.47108 * 210.00092 * 20 18 16 23 23 H 1.48507 * 109.47009 * 329.99931 * 20 18 16 24 24 C 1.46924 * 118.73982 * 53.85715 * 10 9 8 25 25 C 1.53042 * 109.46243 * 240.06793 * 7 6 5 26 26 C 1.38234 * 119.99605 * 0.24888 * 6 5 4 27 27 C 1.38239 * 119.99526 * 270.02137 * 3 2 1 28 28 H 1.09002 * 109.47403 * 59.99856 * 1 2 3 29 29 H 1.08995 * 109.47110 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47415 * 300.00621 * 1 2 3 31 31 H 1.08993 * 109.47336 * 239.99823 * 2 1 3 32 32 H 1.08999 * 109.47171 * 119.99418 * 2 1 3 33 33 H 1.07998 * 119.99774 * 0.02562 * 4 3 2 34 34 H 1.07994 * 120.00630 * 179.97438 * 5 4 3 35 35 H 1.08995 * 109.46221 * 0.02763 * 7 6 5 36 36 H 1.09006 * 109.49766 * 61.43314 * 8 7 6 37 37 H 1.08998 * 109.49747 * 301.34015 * 8 7 6 38 38 H 1.08993 * 109.58861 * 185.58030 * 9 8 7 39 39 H 1.08997 * 109.70246 * 65.21948 * 9 8 7 40 40 H 0.96998 * 119.99957 * 355.01868 * 13 11 10 41 41 H 1.08999 * 109.46950 * 60.00577 * 14 13 11 42 42 H 1.08994 * 109.47292 * 299.99762 * 14 13 11 43 43 H 1.09003 * 109.47469 * 300.00278 * 15 14 13 44 44 H 1.08999 * 109.47112 * 60.00577 * 15 14 13 45 45 H 0.96999 * 120.00270 * 180.02562 * 19 18 16 46 46 H 1.09001 * 109.58342 * 65.93187 * 24 10 9 47 47 H 1.09000 * 109.58624 * 186.35188 * 24 10 9 48 48 H 1.08997 * 109.49669 * 298.56738 * 25 7 6 49 49 H 1.08996 * 109.49534 * 58.65990 * 25 7 6 50 50 H 1.08006 * 120.00031 * 179.72801 * 26 6 5 51 51 H 1.07997 * 120.00524 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0726 1.1971 5 6 2.7240 3.3756 1.1971 6 6 2.9544 4.0273 -0.0002 7 6 3.4568 5.4480 -0.0002 8 6 4.8050 5.5121 -0.7216 9 6 5.3290 6.9512 -0.6895 10 7 4.3022 7.8409 -1.2491 11 6 4.5998 8.6841 -2.2575 12 8 5.6988 8.6474 -2.7764 13 7 3.6792 9.5680 -2.6908 14 6 4.0365 10.5570 -3.7109 15 6 2.8201 11.4317 -4.0211 16 6 3.1878 12.4496 -5.0699 17 1 4.1887 12.4702 -5.4750 18 6 2.2463 13.3545 -5.5123 19 7 1.0273 13.3291 -5.0195 20 14 2.7018 14.6157 -6.8129 21 1 2.4340 14.0547 -8.1616 22 1 1.8900 15.8436 -6.6174 23 1 4.1435 14.9511 -6.6936 24 6 2.9464 7.7981 -0.6845 25 6 2.4478 6.3456 -0.7203 26 6 2.7187 3.3774 -1.1972 27 6 2.2623 2.0725 -1.1972 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 2.0830 1.5634 2.1324 34 1 2.9036 3.8850 2.1322 35 1 3.5783 5.7903 1.0274 36 1 4.6794 5.1936 -1.7566 37 1 5.5165 4.8547 -0.2221 38 1 6.2385 7.0224 -1.2859 39 1 5.5428 7.2416 0.3391 40 1 2.7801 9.5492 -2.3273 41 1 4.3565 10.0441 -4.6179 42 1 4.8488 11.1828 -3.3414 43 1 2.0074 10.8062 -4.3904 44 1 2.5006 11.9446 -3.1140 45 1 0.3648 13.9655 -5.3310 46 1 2.9682 8.1546 0.3454 47 1 2.2836 8.4282 -1.2775 48 1 2.3443 6.0193 -1.7552 49 1 1.4817 6.2813 -0.2198 50 1 2.8945 3.8880 -2.1326 51 1 2.0823 1.5634 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599023663.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:43 Heat of formation + Delta-G solvation = -30.772355 kcal Electronic energy + Delta-G solvation = -27442.159455 eV Core-core repulsion = 23726.086389 eV Total energy + Delta-G solvation = -3716.073066 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.49225 -39.63240 -37.55038 -34.96865 -34.78120 -33.03849 -32.52291 -31.18874 -31.17359 -29.65262 -28.87314 -25.71086 -24.58736 -23.47808 -23.19636 -23.06622 -21.43735 -20.96393 -20.31429 -19.24921 -17.92942 -16.63526 -16.39737 -15.85918 -15.75570 -15.40424 -15.33872 -14.52261 -14.40770 -14.33841 -14.21225 -14.01882 -13.86370 -13.74473 -13.49740 -13.43859 -13.22462 -12.70272 -12.63383 -12.48137 -12.27229 -12.04004 -11.68421 -11.57967 -11.43482 -11.23516 -11.16403 -11.02824 -10.94574 -10.82334 -10.61639 -10.52833 -10.29897 -9.84982 -9.51770 -9.24327 -9.15188 -8.72557 -8.70247 -8.44216 -8.15389 -6.07809 -4.10254 1.08125 1.17113 2.94145 3.30765 3.36793 3.41429 3.48171 3.57307 4.24070 4.32832 4.41193 4.46271 4.52859 4.61126 4.71364 4.76781 4.89422 4.95679 4.98601 5.07402 5.15448 5.18384 5.20565 5.24729 5.29299 5.37290 5.45610 5.52136 5.58288 5.59196 5.67100 5.73040 5.75703 5.82576 5.85232 5.89826 5.91344 6.10126 6.20661 6.30511 6.36588 6.42494 6.44900 6.65262 6.77281 6.79752 7.03454 7.21732 7.57677 7.64974 7.91420 8.26960 8.40592 8.94365 9.01722 9.54360 11.03855 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019267 B = 0.001931 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.892436 B =14498.552294 C =15309.717214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.089 4.089 4 C -0.118 4.118 5 C -0.114 4.114 6 C -0.077 4.077 7 C -0.046 4.046 8 C -0.125 4.125 9 C 0.130 3.870 10 N -0.635 5.635 11 C 0.703 3.297 12 O -0.597 6.597 13 N -0.739 5.739 14 C 0.139 3.861 15 C 0.013 3.987 16 C -0.520 4.520 17 H 0.060 0.940 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.272 1.272 24 C 0.112 3.888 25 C -0.125 4.125 26 C -0.109 4.109 27 C -0.116 4.116 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.061 0.939 40 H 0.392 0.608 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.021 0.979 44 H 0.022 0.978 45 H 0.262 0.738 46 H 0.068 0.932 47 H 0.082 0.918 48 H 0.070 0.930 49 H 0.075 0.925 50 H 0.121 0.879 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.288 -25.860 15.712 30.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.089 4.089 4 C -0.136 4.136 5 C -0.132 4.132 6 C -0.077 4.077 7 C -0.065 4.065 8 C -0.163 4.163 9 C 0.007 3.993 10 N -0.374 5.374 11 C 0.404 3.596 12 O -0.476 6.476 13 N -0.395 5.395 14 C 0.016 3.984 15 C -0.025 4.025 16 C -0.559 4.559 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.534 5.534 20 Si 0.725 3.275 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.197 1.197 24 C -0.012 4.012 25 C -0.164 4.164 26 C -0.127 4.127 27 C -0.134 4.134 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.112 0.888 39 H 0.079 0.921 40 H 0.228 0.772 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.040 0.960 44 H 0.040 0.960 45 H 0.071 0.929 46 H 0.086 0.914 47 H 0.101 0.899 48 H 0.089 0.911 49 H 0.094 0.906 50 H 0.139 0.861 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.361 -25.736 15.290 29.938 hybrid contribution -0.448 0.685 -0.489 0.953 sum -0.087 -25.051 14.801 29.097 Atomic orbital electron populations 1.21749 0.94713 1.01658 1.02303 1.20535 0.96207 0.92780 1.02706 1.19880 0.99511 0.96248 0.93258 1.20976 1.00258 0.94943 0.97399 1.21041 0.99887 0.94788 0.97483 1.19854 0.99013 0.95697 0.93112 1.20153 0.95029 0.90953 1.00346 1.22003 0.96052 0.96910 1.01330 1.21381 0.91753 0.87700 0.98471 1.47282 1.11089 1.41856 1.37201 1.15972 0.84637 0.79290 0.79698 1.90868 1.22956 1.73758 1.60017 1.45715 1.13476 1.35307 1.45004 1.21593 1.00061 0.88328 0.88398 1.19324 0.91858 0.93979 0.97294 1.21055 0.97635 1.15186 1.21991 0.92208 1.24997 0.94928 0.97629 0.96770 1.69953 1.03237 1.37031 1.43130 0.86509 0.78570 0.80714 0.81743 1.20581 1.21195 1.19719 1.21693 0.83511 0.96758 0.99238 1.22066 0.98383 0.94360 1.01551 1.21030 0.99141 0.94604 0.97887 1.21023 0.99969 0.94910 0.97483 0.92488 0.92456 0.92573 0.91134 0.91194 0.86371 0.86181 0.90234 0.91219 0.90790 0.88752 0.92057 0.77238 0.92751 0.92862 0.96022 0.96003 0.92885 0.91374 0.89938 0.91079 0.90608 0.86072 0.86290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.89 37.15 0.37 -0.47 16 2 C -0.08 -0.52 6.06 -27.89 -0.17 -0.69 16 3 C -0.09 -0.71 5.13 -104.62 -0.54 -1.25 16 4 C -0.12 -0.92 9.70 -39.59 -0.38 -1.30 16 5 C -0.11 -0.92 9.67 -39.58 -0.38 -1.30 16 6 C -0.08 -0.67 4.78 -104.62 -0.50 -1.17 16 7 C -0.05 -0.39 2.32 -91.73 -0.21 -0.60 16 8 C -0.12 -1.17 5.15 -26.61 -0.14 -1.31 16 9 C 0.13 1.50 6.44 -3.71 -0.02 1.48 16 10 N -0.64 -8.64 2.97 -178.24 -0.53 -9.17 16 11 C 0.70 12.84 8.30 -86.91 -0.72 12.12 16 12 O -0.60 -13.17 15.77 5.29 0.08 -13.09 16 13 N -0.74 -13.64 5.47 -65.23 -0.36 -14.00 16 14 C 0.14 3.06 5.62 -4.04 -0.02 3.04 16 15 C 0.01 0.33 5.09 -27.88 -0.14 0.18 16 16 C -0.52 -14.56 9.11 -34.44 -0.31 -14.88 16 17 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.21 13.29 55.43 0.74 -25.48 16 20 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 24 C 0.11 1.17 6.42 -3.49 -0.02 1.15 16 25 C -0.13 -1.13 5.16 -26.39 -0.14 -1.27 16 26 C -0.11 -0.99 8.74 -39.58 -0.35 -1.34 16 27 C -0.12 -0.99 9.70 -39.58 -0.38 -1.37 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 32 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 33 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 34 H 0.12 0.78 7.95 -52.49 -0.42 0.37 16 35 H 0.08 0.60 7.88 -51.93 -0.41 0.19 16 36 H 0.07 0.74 7.46 -51.93 -0.39 0.36 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 1.28 6.99 -51.93 -0.36 0.91 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.39 6.31 5.96 -40.82 -0.24 6.07 16 41 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 46 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.08 0.88 5.64 -51.93 -0.29 0.59 16 48 H 0.07 0.72 7.43 -51.93 -0.39 0.34 16 49 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 50 H 0.12 1.09 7.14 -52.48 -0.37 0.72 16 51 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 405.44 15.07 6.11 6.11 Total: -1.00 -32.61 405.44 -11.89 -44.51 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -8.75 Total: 2.05 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -4.16 Total: -7.42 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: -0.15 Total: -48.65 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.08 Total: -13.09 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.61 -11.89 -44.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599023663.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.733 kcal (2) G-P(sol) polarization free energy of solvation -32.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds