Wall clock time and date at job start Tue Mar 31 2020 16:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50701 * 109.47261 * 2 1 4 4 C 1.38233 * 120.00536 * 89.99576 * 3 2 1 5 5 C 1.38230 * 120.00477 * 179.97438 * 4 3 2 6 6 C 1.38241 * 119.99975 * 0.02688 * 5 4 3 7 7 C 1.50694 * 120.00191 * 179.97438 * 6 5 4 8 8 C 1.53041 * 109.46108 * 119.99844 * 7 6 5 9 9 C 1.53189 * 109.31621 * 181.38746 * 8 7 6 10 10 N 1.46933 * 108.77196 * 305.36698 * 9 8 7 11 11 C 1.34779 * 120.62793 * 233.58162 * 10 9 8 12 12 O 1.21586 * 119.99900 * 5.22563 * 11 10 9 13 13 N 1.34778 * 119.99935 * 185.21977 * 11 10 9 14 14 C 1.46502 * 119.99582 * 175.01517 * 13 11 10 15 15 C 1.53000 * 109.46534 * 180.02562 * 14 13 11 16 16 C 1.50704 * 109.46817 * 179.97438 * 15 14 13 17 17 H 1.07991 * 120.00260 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99579 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00586 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99736 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46897 * 89.99688 * 20 18 16 22 22 H 1.48493 * 109.47108 * 210.00092 * 20 18 16 23 23 H 1.48507 * 109.47009 * 329.99931 * 20 18 16 24 24 C 1.46924 * 118.73982 * 53.85715 * 10 9 8 25 25 C 1.53042 * 109.46243 * 240.06793 * 7 6 5 26 26 C 1.38234 * 119.99605 * 0.24888 * 6 5 4 27 27 C 1.38239 * 119.99526 * 270.02137 * 3 2 1 28 28 H 1.09002 * 109.47403 * 59.99856 * 1 2 3 29 29 H 1.08995 * 109.47110 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47415 * 300.00621 * 1 2 3 31 31 H 1.08993 * 109.47336 * 239.99823 * 2 1 3 32 32 H 1.08999 * 109.47171 * 119.99418 * 2 1 3 33 33 H 1.07998 * 119.99774 * 0.02562 * 4 3 2 34 34 H 1.07994 * 120.00630 * 179.97438 * 5 4 3 35 35 H 1.08995 * 109.46221 * 0.02763 * 7 6 5 36 36 H 1.09006 * 109.49766 * 61.43314 * 8 7 6 37 37 H 1.08998 * 109.49747 * 301.34015 * 8 7 6 38 38 H 1.08993 * 109.58861 * 185.58030 * 9 8 7 39 39 H 1.08997 * 109.70246 * 65.21948 * 9 8 7 40 40 H 0.96998 * 119.99957 * 355.01868 * 13 11 10 41 41 H 1.08999 * 109.46950 * 60.00577 * 14 13 11 42 42 H 1.08994 * 109.47292 * 299.99762 * 14 13 11 43 43 H 1.09003 * 109.47469 * 300.00278 * 15 14 13 44 44 H 1.08999 * 109.47112 * 60.00577 * 15 14 13 45 45 H 0.96999 * 120.00270 * 180.02562 * 19 18 16 46 46 H 1.09001 * 109.58342 * 65.93187 * 24 10 9 47 47 H 1.09000 * 109.58624 * 186.35188 * 24 10 9 48 48 H 1.08997 * 109.49669 * 298.56738 * 25 7 6 49 49 H 1.08996 * 109.49534 * 58.65990 * 25 7 6 50 50 H 1.08006 * 120.00031 * 179.72801 * 26 6 5 51 51 H 1.07997 * 120.00524 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0726 1.1971 5 6 2.7240 3.3756 1.1971 6 6 2.9544 4.0273 -0.0002 7 6 3.4568 5.4480 -0.0002 8 6 4.8050 5.5121 -0.7216 9 6 5.3290 6.9512 -0.6895 10 7 4.3022 7.8409 -1.2491 11 6 4.5998 8.6841 -2.2575 12 8 5.6988 8.6474 -2.7764 13 7 3.6792 9.5680 -2.6908 14 6 4.0365 10.5570 -3.7109 15 6 2.8201 11.4317 -4.0211 16 6 3.1878 12.4496 -5.0699 17 1 4.1887 12.4702 -5.4750 18 6 2.2463 13.3545 -5.5123 19 7 1.0273 13.3291 -5.0195 20 14 2.7018 14.6157 -6.8129 21 1 2.4340 14.0547 -8.1616 22 1 1.8900 15.8436 -6.6174 23 1 4.1435 14.9511 -6.6936 24 6 2.9464 7.7981 -0.6845 25 6 2.4478 6.3456 -0.7203 26 6 2.7187 3.3774 -1.1972 27 6 2.2623 2.0725 -1.1972 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 2.0830 1.5634 2.1324 34 1 2.9036 3.8850 2.1322 35 1 3.5783 5.7903 1.0274 36 1 4.6794 5.1936 -1.7566 37 1 5.5165 4.8547 -0.2221 38 1 6.2385 7.0224 -1.2859 39 1 5.5428 7.2416 0.3391 40 1 2.7801 9.5492 -2.3273 41 1 4.3565 10.0441 -4.6179 42 1 4.8488 11.1828 -3.3414 43 1 2.0074 10.8062 -4.3904 44 1 2.5006 11.9446 -3.1140 45 1 0.3648 13.9655 -5.3310 46 1 2.9682 8.1546 0.3454 47 1 2.2836 8.4282 -1.2775 48 1 2.3443 6.0193 -1.7552 49 1 1.4817 6.2813 -0.2198 50 1 2.8945 3.8880 -2.1326 51 1 2.0823 1.5634 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599023663.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:42 Heat of formation + Delta-G solvation = -47.295277 kcal Electronic energy + Delta-G solvation = -27442.875943 eV Core-core repulsion = 23726.086389 eV Total energy + Delta-G solvation = -3716.789554 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.54912 -40.52147 -38.56350 -36.63211 -35.66396 -34.85329 -33.50632 -32.20121 -31.77861 -31.21431 -29.78125 -27.01617 -26.00526 -24.28126 -24.10598 -23.67502 -22.93171 -22.11627 -21.20150 -20.39311 -19.13441 -18.49580 -17.29849 -17.12230 -16.79040 -16.50939 -16.38227 -16.01279 -15.52581 -15.40326 -15.19884 -14.92542 -14.80570 -14.56870 -14.47429 -14.28650 -14.19194 -14.13525 -13.70673 -13.44609 -13.33456 -13.10949 -12.94015 -12.65987 -12.51929 -12.29536 -12.27215 -12.22372 -12.16872 -11.77754 -11.66465 -11.64094 -11.56786 -11.45564 -11.29678 -11.07351 -10.60463 -10.17148 -9.76947 -9.46093 -9.34511 -8.23905 -6.34185 0.46379 0.55317 1.41899 1.42595 1.53904 1.69042 2.12631 2.40952 2.86252 3.00861 3.10740 3.64075 3.72951 3.92166 3.95232 4.02615 4.13123 4.19243 4.26318 4.34727 4.40055 4.43435 4.50509 4.51555 4.53067 4.58648 4.67661 4.72822 4.74978 4.83771 4.85336 4.86439 4.93116 5.00440 5.08129 5.09456 5.13052 5.23039 5.24268 5.30986 5.37046 5.39055 5.50247 5.58330 5.59340 5.61535 5.78102 5.78593 5.80732 5.95575 6.17089 6.17745 6.78491 6.98810 7.34939 7.56081 8.87994 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019267 B = 0.001931 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.892436 B =14498.552294 C =15309.717214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.094 4.094 4 C -0.124 4.124 5 C -0.116 4.116 6 C -0.084 4.084 7 C -0.038 4.038 8 C -0.115 4.115 9 C 0.127 3.873 10 N -0.626 5.626 11 C 0.698 3.302 12 O -0.640 6.640 13 N -0.736 5.736 14 C 0.160 3.840 15 C 0.025 3.975 16 C -0.547 4.547 17 H 0.058 0.942 18 C 0.007 3.993 19 N -0.925 5.925 20 Si 0.966 3.034 21 H -0.273 1.273 22 H -0.279 1.279 23 H -0.267 1.267 24 C 0.107 3.893 25 C -0.119 4.119 26 C -0.123 4.123 27 C -0.130 4.130 28 H 0.047 0.953 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.099 0.901 36 H 0.051 0.949 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.404 0.596 41 H 0.041 0.959 42 H 0.044 0.956 43 H 0.007 0.993 44 H 0.010 0.990 45 H 0.266 0.734 46 H 0.094 0.906 47 H 0.078 0.922 48 H 0.054 0.946 49 H 0.092 0.908 50 H 0.112 0.888 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.637 -26.698 17.341 31.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.122 4.122 3 C -0.094 4.094 4 C -0.142 4.142 5 C -0.134 4.134 6 C -0.084 4.084 7 C -0.057 4.057 8 C -0.153 4.153 9 C 0.004 3.996 10 N -0.364 5.364 11 C 0.400 3.600 12 O -0.523 6.523 13 N -0.392 5.392 14 C 0.035 3.965 15 C -0.013 4.013 16 C -0.585 4.585 17 H 0.077 0.923 18 C -0.191 4.191 19 N -0.565 5.565 20 Si 0.790 3.210 21 H -0.198 1.198 22 H -0.204 1.204 23 H -0.191 1.191 24 C -0.016 4.016 25 C -0.157 4.157 26 C -0.141 4.141 27 C -0.148 4.148 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.154 0.846 34 H 0.157 0.843 35 H 0.117 0.883 36 H 0.069 0.931 37 H 0.108 0.892 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.242 0.758 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.026 0.974 44 H 0.028 0.972 45 H 0.075 0.925 46 H 0.112 0.888 47 H 0.096 0.904 48 H 0.073 0.927 49 H 0.111 0.889 50 H 0.131 0.869 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.018 -26.617 16.965 31.564 hybrid contribution -0.369 0.852 -0.938 1.320 sum -0.387 -25.765 16.027 30.346 Atomic orbital electron populations 1.21732 0.94440 1.02280 1.01783 1.20572 0.96366 0.91808 1.03407 1.20142 0.99044 0.97122 0.93133 1.21265 0.99802 0.95081 0.98063 1.21289 0.99280 0.94969 0.97883 1.19870 0.99573 0.95768 0.93235 1.20101 0.93816 0.90826 1.00938 1.21912 0.97226 0.95472 1.00732 1.21570 0.90397 0.88577 0.99015 1.47357 1.12910 1.40528 1.35571 1.16117 0.83799 0.79714 0.80415 1.90834 1.24648 1.75071 1.61698 1.45425 1.14328 1.34953 1.44541 1.21079 0.98205 0.88353 0.88827 1.19120 0.92428 0.93637 0.96073 1.21454 0.97849 1.16258 1.22957 0.92330 1.25869 0.94787 0.99609 0.98882 1.70053 1.04160 1.37932 1.44350 0.85436 0.78524 0.78101 0.78929 1.19820 1.20406 1.19091 1.21963 0.81509 0.97896 1.00206 1.22012 0.99396 0.93291 1.01027 1.21090 0.99936 0.95078 0.97990 1.21189 1.00360 0.94962 0.98249 0.93358 0.91289 0.92717 0.90845 0.90105 0.84575 0.84282 0.88292 0.93067 0.89197 0.91207 0.89490 0.75822 0.94070 0.93807 0.97448 0.97209 0.92526 0.88805 0.90412 0.92710 0.88939 0.86949 0.85808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.89 71.98 0.71 -0.73 16 2 C -0.08 -0.89 6.06 29.85 0.18 -0.71 16 3 C -0.09 -1.37 5.13 -19.86 -0.10 -1.47 16 4 C -0.12 -1.66 9.70 22.27 0.22 -1.45 16 5 C -0.12 -1.59 9.67 22.27 0.22 -1.37 16 6 C -0.08 -1.33 4.78 -19.87 -0.09 -1.42 16 7 C -0.04 -0.56 2.32 -11.51 -0.03 -0.59 16 8 C -0.12 -2.02 5.15 30.67 0.16 -1.87 16 9 C 0.13 2.80 6.44 86.36 0.56 3.36 16 10 N -0.63 -16.62 2.97 -836.08 -2.48 -19.10 16 11 C 0.70 25.85 8.30 179.05 1.49 27.33 16 12 O -0.64 -29.05 15.77 -3.99 -0.06 -29.11 16 13 N -0.74 -27.56 5.47 -478.54 -2.62 -30.18 16 14 C 0.16 7.23 5.62 86.38 0.49 7.71 16 15 C 0.02 1.29 5.09 29.85 0.15 1.44 16 16 C -0.55 -31.03 9.11 25.60 0.23 -30.80 16 17 H 0.06 3.26 7.74 -2.92 -0.02 3.24 16 18 C 0.01 0.42 5.46 84.66 0.46 0.88 16 19 N -0.93 -54.48 13.29 21.45 0.28 -54.19 16 20 Si 0.97 44.01 29.54 68.60 2.03 46.04 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 22 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 24 C 0.11 2.05 6.42 86.51 0.56 2.60 16 25 C -0.12 -1.95 5.16 30.82 0.16 -1.79 16 26 C -0.12 -2.19 8.74 22.27 0.19 -2.00 16 27 C -0.13 -2.15 9.70 22.27 0.22 -1.93 16 28 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.07 0.73 8.08 -2.39 -0.02 0.71 16 32 H 0.08 0.68 8.09 -2.39 -0.02 0.66 16 33 H 0.14 1.28 8.06 -2.91 -0.02 1.25 16 34 H 0.14 1.32 7.95 -2.91 -0.02 1.29 16 35 H 0.10 1.12 7.88 -2.39 -0.02 1.10 16 36 H 0.05 1.10 7.46 -2.38 -0.02 1.08 16 37 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.07 1.92 6.99 -2.39 -0.02 1.90 16 39 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.40 13.07 5.96 -92.71 -0.55 12.52 16 41 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 44 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 46 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.08 1.58 5.64 -2.39 -0.01 1.56 16 48 H 0.05 1.09 7.43 -2.39 -0.02 1.07 16 49 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 50 H 0.11 2.12 7.14 -2.91 -0.02 2.10 16 51 H 0.12 1.80 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -70.68 405.44 3.26 -67.42 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: 0.35 Total: 21.95 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: 5.76 Total: -2.82 kcal Atomic # 7 Polarization: -98.66 SS G_CDS: -4.81 Total: -103.47 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -0.06 Total: -29.11 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -70.68 3.26 -67.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599023663.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.127 kcal (2) G-P(sol) polarization free energy of solvation -70.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds