Wall clock time and date at job start Tue Mar 31 2020 16:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53113 * 109.52495 * 2 1 4 4 C 1.53037 * 109.27864 * 182.38040 * 3 2 1 5 5 N 1.46846 * 109.52190 * 59.18448 * 4 3 2 6 6 C 1.46901 * 110.99785 * 174.16289 * 5 4 3 7 7 C 1.53002 * 109.47196 * 169.99695 * 6 5 4 8 8 C 1.53000 * 109.47268 * 179.97438 * 7 6 5 9 9 N 1.46497 * 109.47087 * 179.97438 * 8 7 6 10 10 C 1.34774 * 120.00234 * 179.97438 * 9 8 7 11 11 O 1.21618 * 119.99610 * 359.97438 * 10 9 8 12 12 C 1.47428 * 120.00477 * 180.02562 * 10 9 8 13 13 C 1.39232 * 120.28208 * 357.04743 * 12 10 9 14 14 C 1.38215 * 120.09251 * 180.27997 * 13 12 10 15 15 C 1.38828 * 120.67982 * 359.72196 * 14 13 12 16 16 C 1.37601 * 120.56733 * 359.97438 * 15 14 13 17 17 C 1.40710 * 119.87923 * 0.02562 * 16 15 14 18 18 C 1.40893 * 120.32484 * 179.97438 * 17 16 15 19 19 H 1.08007 * 119.99693 * 145.84936 * 18 17 16 20 20 C 1.40270 * 120.00340 * 325.85599 * 18 17 16 21 21 N 1.30628 * 119.99792 * 340.93931 * 20 18 17 22 22 Si 1.86802 * 120.00322 * 160.94274 * 20 18 17 23 23 H 1.48497 * 109.46888 * 269.99951 * 22 20 18 24 24 H 1.48499 * 109.46819 * 29.99664 * 22 20 18 25 25 H 1.48498 * 109.47235 * 149.99593 * 22 20 18 26 26 C 1.46850 * 111.19655 * 298.25234 * 5 4 3 27 27 C 1.53037 * 109.51941 * 61.74352 * 26 5 4 28 28 H 1.08999 * 109.47108 * 59.99444 * 1 2 3 29 29 H 1.08999 * 109.46793 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46363 * 299.99669 * 1 2 3 31 31 H 1.09000 * 109.52248 * 120.13215 * 2 1 3 32 32 H 1.09001 * 109.50490 * 62.43733 * 3 2 1 33 33 H 1.09004 * 109.53714 * 302.34472 * 3 2 1 34 34 H 1.08992 * 109.46417 * 299.16334 * 4 3 2 35 35 H 1.09007 * 109.44973 * 179.19066 * 4 3 2 36 36 H 1.08997 * 109.47301 * 49.99354 * 6 5 4 37 37 H 1.08996 * 109.46909 * 289.99331 * 6 5 4 38 38 H 1.09000 * 109.47208 * 59.99117 * 7 6 5 39 39 H 1.09002 * 109.46773 * 300.00069 * 7 6 5 40 40 H 1.08997 * 109.47147 * 59.99710 * 8 7 6 41 41 H 1.09003 * 109.46728 * 299.99500 * 8 7 6 42 42 H 0.97004 * 120.00040 * 0.02562 * 9 8 7 43 43 H 1.08001 * 119.94888 * 0.02562 * 13 12 10 44 44 H 1.07997 * 119.66332 * 179.73917 * 14 13 12 45 45 H 1.07994 * 119.72068 * 180.02562 * 15 14 13 46 46 H 1.07999 * 120.05974 * 180.02562 * 16 15 14 47 47 H 0.96993 * 120.00143 * 354.75992 * 21 20 18 48 48 H 1.08995 * 109.46197 * 181.76154 * 26 5 4 49 49 H 1.09002 * 109.46269 * 301.73455 * 26 5 4 50 50 H 1.09006 * 109.50527 * 180.87729 * 27 26 5 51 51 H 1.09004 * 109.50024 * 60.76634 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0418 1.4431 0.0000 4 6 3.5710 1.4369 -0.0600 5 7 4.0115 0.7425 -1.2766 6 6 5.4685 0.8373 -1.4384 7 6 5.9184 -0.0962 -2.5641 8 6 7.4358 0.0029 -2.7331 9 7 7.8666 -0.8913 -3.8105 10 6 9.1712 -0.9702 -4.1398 11 8 9.9906 -0.2986 -3.5427 12 6 9.6047 -1.8697 -5.2244 13 6 8.6805 -2.6858 -5.8713 14 6 9.0923 -3.5318 -6.8837 15 6 10.4244 -3.5760 -7.2722 16 6 11.3598 -2.7769 -6.6559 17 6 10.9667 -1.9067 -5.6223 18 6 11.9168 -1.0848 -4.9845 19 1 11.6347 -0.1011 -4.6391 20 6 13.2290 -1.5440 -4.7981 21 7 13.4887 -2.8226 -4.8612 22 14 14.6052 -0.3270 -4.4594 23 1 15.2058 0.1113 -5.7449 24 1 14.0578 0.8519 -3.7413 25 1 15.6459 -0.9769 -3.6229 26 6 3.5722 -0.6587 -1.2768 27 6 2.0430 -0.7151 -1.2530 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 1.8943 -0.5157 0.8885 32 1 1.7154 1.9450 0.9108 33 1 1.6456 1.9703 -0.8679 34 1 3.9667 0.9223 0.8155 35 1 3.9378 2.4633 -0.0746 36 1 5.9571 0.5468 -0.5084 37 1 5.7405 1.8631 -1.6867 38 1 5.4298 0.1942 -3.4941 39 1 5.6464 -1.1221 -2.3158 40 1 7.9247 -0.2873 -1.8032 41 1 7.7074 1.0289 -2.9816 42 1 7.2129 -1.4262 -4.2875 43 1 7.6412 -2.6606 -5.5787 44 1 8.3703 -4.1649 -7.3780 45 1 10.7290 -4.2425 -8.0654 46 1 12.3939 -2.8176 -6.9649 47 1 12.7646 -3.4602 -4.9610 48 1 3.9400 -1.1545 -2.1750 49 1 3.9679 -1.1636 -0.3955 50 1 1.7173 -1.7552 -1.2375 51 1 1.6469 -0.2225 -2.1411 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600963437.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:25 Heat of formation + Delta-G solvation = -39.375627 kcal Electronic energy + Delta-G solvation = -27581.098338 eV Core-core repulsion = 23864.652206 eV Total energy + Delta-G solvation = -3716.446132 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.63720 -38.97604 -37.10095 -35.88677 -34.31161 -33.77355 -31.57663 -30.99889 -29.89420 -29.32592 -28.01497 -25.44993 -24.52061 -23.77652 -22.56108 -21.91619 -21.00642 -20.77635 -19.95184 -19.34262 -18.06785 -16.57414 -16.20385 -15.80547 -15.22293 -15.04509 -14.81763 -14.68391 -14.50551 -14.35780 -14.10242 -13.98231 -13.69875 -13.55268 -13.12182 -12.73796 -12.63657 -12.46561 -12.33095 -12.16055 -12.12134 -11.72213 -11.57941 -11.49130 -11.37442 -11.13921 -11.02151 -10.93560 -10.83987 -10.74260 -10.57464 -10.38242 -10.36557 -10.15337 -9.60682 -9.07702 -8.54756 -8.49706 -8.38134 -7.78712 -7.60424 -7.13735 -4.45753 2.24566 2.73561 3.20344 3.31422 3.42328 3.54956 3.98286 4.04673 4.08179 4.42319 4.46682 4.48290 4.64696 4.81738 4.89632 5.00193 5.02553 5.13552 5.17409 5.21466 5.30547 5.34684 5.39118 5.45369 5.47448 5.56708 5.62703 5.62862 5.70538 5.78167 5.81267 5.85582 5.86865 5.87678 5.97797 6.10932 6.13158 6.16056 6.24389 6.52088 6.71932 6.83697 6.86159 6.99323 7.12467 7.28401 7.49584 7.61461 7.72460 7.89502 8.09915 8.22125 8.38286 8.73882 8.86966 9.37110 10.04827 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.018662 B = 0.002149 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.975984 B =13028.673081 C =14275.363417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.111 4.111 4 C 0.055 3.945 5 N -0.537 5.537 6 C 0.059 3.941 7 C -0.133 4.133 8 C 0.127 3.873 9 N -0.749 5.749 10 C 0.563 3.437 11 O -0.538 6.538 12 C -0.265 4.265 13 C -0.043 4.043 14 C -0.260 4.260 15 C -0.076 4.076 16 C -0.201 4.201 17 C 0.120 3.880 18 C -0.466 4.466 19 H 0.106 0.894 20 C 0.030 3.970 21 N -0.794 5.794 22 Si 1.073 2.927 23 H -0.275 1.275 24 H -0.273 1.273 25 H -0.276 1.276 26 C 0.046 3.954 27 C -0.112 4.112 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.032 0.968 35 H 0.074 0.926 36 H 0.036 0.964 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.391 0.609 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.107 0.893 47 H 0.298 0.702 48 H 0.084 0.916 49 H 0.031 0.969 50 H 0.065 0.935 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.288 4.599 7.910 22.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.149 4.149 4 C -0.073 4.073 5 N -0.262 5.262 6 C -0.069 4.069 7 C -0.171 4.171 8 C 0.003 3.997 9 N -0.404 5.404 10 C 0.357 3.643 11 O -0.416 6.416 12 C -0.270 4.270 13 C -0.062 4.062 14 C -0.279 4.279 15 C -0.095 4.095 16 C -0.220 4.220 17 C 0.116 3.884 18 C -0.493 4.493 19 H 0.124 0.876 20 C -0.191 4.191 21 N -0.418 5.418 22 Si 0.896 3.104 23 H -0.200 1.200 24 H -0.198 1.198 25 H -0.202 1.202 26 C -0.082 4.082 27 C -0.149 4.149 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.055 0.945 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.225 0.775 43 H 0.109 0.891 44 H 0.111 0.889 45 H 0.111 0.889 46 H 0.125 0.875 47 H 0.112 0.888 48 H 0.102 0.898 49 H 0.050 0.950 50 H 0.084 0.916 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -18.244 5.401 8.211 20.723 hybrid contribution -1.755 -1.022 0.183 2.039 sum -19.999 4.380 8.395 22.127 Atomic orbital electron populations 1.21810 0.95119 1.01635 1.01744 1.21198 0.95613 0.96285 0.98329 1.21642 0.94608 0.96489 1.02115 1.22085 0.95809 0.99024 0.90413 1.61999 1.12390 1.14205 1.37607 1.22019 0.86726 1.00654 0.97463 1.21939 0.95490 1.00022 0.99681 1.21037 0.92770 0.94745 0.91197 1.45986 1.09019 1.46885 1.38530 1.18375 0.80659 0.82112 0.83178 1.90679 1.51494 1.45123 1.54320 1.19402 0.95923 1.07807 1.03908 1.20715 0.96238 0.94556 0.94728 1.20241 0.95629 1.07001 1.05041 1.20744 0.93515 0.97327 0.97892 1.21256 0.98683 1.02590 0.99463 1.17518 0.91030 0.89866 0.90028 1.21218 0.94658 1.03864 1.29556 0.87630 1.27278 1.00803 0.98790 0.92261 1.70358 1.39411 1.02959 1.29050 0.83518 0.74173 0.74801 0.77869 1.20044 1.19750 1.20162 1.22246 0.95641 0.89040 1.01229 1.21659 0.94764 1.00214 0.98310 0.92562 0.92768 0.92837 0.91685 0.91700 0.91027 0.94997 0.90708 0.94536 0.90198 0.90465 0.91196 0.92390 0.92104 0.77491 0.89126 0.88901 0.88879 0.87525 0.88790 0.89816 0.95032 0.91647 0.91036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.21 37.16 0.34 -0.54 16 2 C -0.10 -0.68 2.79 -90.50 -0.25 -0.93 16 3 C -0.11 -0.80 5.38 -26.65 -0.14 -0.95 16 4 C 0.05 0.46 5.42 -3.83 -0.02 0.44 16 5 N -0.54 -5.16 4.81 -234.67 -1.13 -6.29 16 6 C 0.06 0.60 5.27 -3.82 -0.02 0.58 16 7 C -0.13 -1.47 4.58 -26.73 -0.12 -1.59 16 8 C 0.13 1.90 5.67 -4.04 -0.02 1.88 16 9 N -0.75 -13.28 5.51 -61.38 -0.34 -13.62 16 10 C 0.56 13.17 7.73 -12.52 -0.10 13.07 16 11 O -0.54 -14.40 13.55 5.26 0.07 -14.33 16 12 C -0.27 -6.50 5.92 -104.37 -0.62 -7.12 16 13 C -0.04 -0.92 9.53 -39.22 -0.37 -1.29 16 14 C -0.26 -5.45 10.03 -39.37 -0.39 -5.85 16 15 C -0.08 -1.68 10.01 -39.60 -0.40 -2.08 16 16 C -0.20 -5.03 7.86 -38.88 -0.31 -5.34 16 17 C 0.12 3.22 5.18 -106.54 -0.55 2.67 16 18 C -0.47 -12.92 7.66 -37.81 -0.29 -13.21 16 19 H 0.11 3.07 5.91 -52.48 -0.31 2.76 16 20 C 0.03 0.79 5.04 -17.30 -0.09 0.70 16 21 N -0.79 -21.42 12.57 55.56 0.70 -20.72 16 22 Si 1.07 22.77 29.98 -169.99 -5.10 17.67 16 23 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 24 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 25 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 26 C 0.05 0.41 4.85 -3.83 -0.02 0.39 16 27 C -0.11 -0.86 5.38 -26.65 -0.14 -1.00 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.07 0.60 8.12 -51.92 -0.42 0.18 16 36 H 0.04 0.38 8.08 -51.93 -0.42 -0.04 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.73 6.21 -51.93 -0.32 0.41 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.39 5.95 6.51 -40.82 -0.27 5.68 16 43 H 0.09 1.57 6.41 -52.49 -0.34 1.23 16 44 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 45 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 46 H 0.11 2.72 6.93 -52.49 -0.36 2.36 16 47 H 0.30 8.23 6.54 -40.82 -0.27 7.96 16 48 H 0.08 0.75 5.81 -51.93 -0.30 0.45 16 49 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 50 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 395.86 15.07 5.97 5.97 Total: -1.00 -30.07 395.86 -11.91 -41.98 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -8.57 Total: 9.50 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -3.52 Total: -20.16 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: -0.77 Total: -40.62 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: 0.07 Total: -14.33 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.10 Total: 17.67 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.07 -11.91 -41.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600963437.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.602 kcal (2) G-P(sol) polarization free energy of solvation -30.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds