Wall clock time and date at job start Tue Mar 31 2020 16:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53113 * 109.52495 * 2 1 4 4 C 1.53037 * 109.27864 * 182.38040 * 3 2 1 5 5 N 1.46846 * 109.52190 * 59.18448 * 4 3 2 6 6 C 1.46901 * 110.99785 * 174.16289 * 5 4 3 7 7 C 1.53002 * 109.47196 * 169.99695 * 6 5 4 8 8 C 1.53000 * 109.47268 * 179.97438 * 7 6 5 9 9 N 1.46497 * 109.47087 * 179.97438 * 8 7 6 10 10 C 1.34774 * 120.00234 * 179.97438 * 9 8 7 11 11 O 1.21618 * 119.99610 * 359.97438 * 10 9 8 12 12 C 1.47428 * 120.00477 * 180.02562 * 10 9 8 13 13 C 1.39232 * 120.28208 * 357.04743 * 12 10 9 14 14 C 1.38215 * 120.09251 * 180.27997 * 13 12 10 15 15 C 1.38828 * 120.67982 * 359.72196 * 14 13 12 16 16 C 1.37601 * 120.56733 * 359.97438 * 15 14 13 17 17 C 1.40710 * 119.87923 * 0.02562 * 16 15 14 18 18 C 1.40893 * 120.32484 * 179.97438 * 17 16 15 19 19 H 1.08007 * 119.99693 * 145.84936 * 18 17 16 20 20 C 1.40270 * 120.00340 * 325.85599 * 18 17 16 21 21 N 1.30628 * 119.99792 * 340.93931 * 20 18 17 22 22 Si 1.86802 * 120.00322 * 160.94274 * 20 18 17 23 23 H 1.48497 * 109.46888 * 269.99951 * 22 20 18 24 24 H 1.48499 * 109.46819 * 29.99664 * 22 20 18 25 25 H 1.48498 * 109.47235 * 149.99593 * 22 20 18 26 26 C 1.46850 * 111.19655 * 298.25234 * 5 4 3 27 27 C 1.53037 * 109.51941 * 61.74352 * 26 5 4 28 28 H 1.08999 * 109.47108 * 59.99444 * 1 2 3 29 29 H 1.08999 * 109.46793 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46363 * 299.99669 * 1 2 3 31 31 H 1.09000 * 109.52248 * 120.13215 * 2 1 3 32 32 H 1.09001 * 109.50490 * 62.43733 * 3 2 1 33 33 H 1.09004 * 109.53714 * 302.34472 * 3 2 1 34 34 H 1.08992 * 109.46417 * 299.16334 * 4 3 2 35 35 H 1.09007 * 109.44973 * 179.19066 * 4 3 2 36 36 H 1.08997 * 109.47301 * 49.99354 * 6 5 4 37 37 H 1.08996 * 109.46909 * 289.99331 * 6 5 4 38 38 H 1.09000 * 109.47208 * 59.99117 * 7 6 5 39 39 H 1.09002 * 109.46773 * 300.00069 * 7 6 5 40 40 H 1.08997 * 109.47147 * 59.99710 * 8 7 6 41 41 H 1.09003 * 109.46728 * 299.99500 * 8 7 6 42 42 H 0.97004 * 120.00040 * 0.02562 * 9 8 7 43 43 H 1.08001 * 119.94888 * 0.02562 * 13 12 10 44 44 H 1.07997 * 119.66332 * 179.73917 * 14 13 12 45 45 H 1.07994 * 119.72068 * 180.02562 * 15 14 13 46 46 H 1.07999 * 120.05974 * 180.02562 * 16 15 14 47 47 H 0.96993 * 120.00143 * 354.75992 * 21 20 18 48 48 H 1.08995 * 109.46197 * 181.76154 * 26 5 4 49 49 H 1.09002 * 109.46269 * 301.73455 * 26 5 4 50 50 H 1.09006 * 109.50527 * 180.87729 * 27 26 5 51 51 H 1.09004 * 109.50024 * 60.76634 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0418 1.4431 0.0000 4 6 3.5710 1.4369 -0.0600 5 7 4.0115 0.7425 -1.2766 6 6 5.4685 0.8373 -1.4384 7 6 5.9184 -0.0962 -2.5641 8 6 7.4358 0.0029 -2.7331 9 7 7.8666 -0.8913 -3.8105 10 6 9.1712 -0.9702 -4.1398 11 8 9.9906 -0.2986 -3.5427 12 6 9.6047 -1.8697 -5.2244 13 6 8.6805 -2.6858 -5.8713 14 6 9.0923 -3.5318 -6.8837 15 6 10.4244 -3.5760 -7.2722 16 6 11.3598 -2.7769 -6.6559 17 6 10.9667 -1.9067 -5.6223 18 6 11.9168 -1.0848 -4.9845 19 1 11.6347 -0.1011 -4.6391 20 6 13.2290 -1.5440 -4.7981 21 7 13.4887 -2.8226 -4.8612 22 14 14.6052 -0.3270 -4.4594 23 1 15.2058 0.1113 -5.7449 24 1 14.0578 0.8519 -3.7413 25 1 15.6459 -0.9769 -3.6229 26 6 3.5722 -0.6587 -1.2768 27 6 2.0430 -0.7151 -1.2530 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 1.8943 -0.5157 0.8885 32 1 1.7154 1.9450 0.9108 33 1 1.6456 1.9703 -0.8679 34 1 3.9667 0.9223 0.8155 35 1 3.9378 2.4633 -0.0746 36 1 5.9571 0.5468 -0.5084 37 1 5.7405 1.8631 -1.6867 38 1 5.4298 0.1942 -3.4941 39 1 5.6464 -1.1221 -2.3158 40 1 7.9247 -0.2873 -1.8032 41 1 7.7074 1.0289 -2.9816 42 1 7.2129 -1.4262 -4.2875 43 1 7.6412 -2.6606 -5.5787 44 1 8.3703 -4.1649 -7.3780 45 1 10.7290 -4.2425 -8.0654 46 1 12.3939 -2.8176 -6.9649 47 1 12.7646 -3.4602 -4.9610 48 1 3.9400 -1.1545 -2.1750 49 1 3.9679 -1.1636 -0.3955 50 1 1.7173 -1.7552 -1.2375 51 1 1.6469 -0.2225 -2.1411 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600963437.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:24 Heat of formation + Delta-G solvation = -56.785386 kcal Electronic energy + Delta-G solvation = -27581.853282 eV Core-core repulsion = 23864.652206 eV Total energy + Delta-G solvation = -3717.201076 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.85629 -40.24022 -38.84790 -36.94726 -35.92470 -35.25459 -32.75432 -31.84554 -31.50922 -31.02658 -28.85786 -27.19335 -25.74406 -24.50145 -23.90420 -23.07376 -22.64030 -21.86713 -21.01479 -20.55008 -19.93449 -18.11466 -17.33777 -16.84145 -16.63114 -16.42979 -16.02586 -15.77873 -15.67391 -15.59501 -15.38362 -15.30214 -14.93130 -14.85696 -14.42603 -14.04652 -13.89757 -13.75839 -13.41189 -13.27426 -13.03582 -12.92376 -12.79288 -12.69151 -12.50215 -12.43245 -12.28842 -12.12247 -12.06286 -11.94439 -11.86438 -11.53724 -11.45326 -11.16737 -11.03008 -10.96629 -10.36822 -10.01989 -9.61191 -9.49864 -9.28912 -9.10495 -6.46836 0.39578 0.90135 1.45287 1.61478 1.76255 2.24752 2.30192 2.36188 2.73743 2.93960 3.55759 3.79896 3.84699 3.88245 3.97753 4.02516 4.05807 4.23917 4.29317 4.32953 4.41993 4.45262 4.47970 4.50412 4.61496 4.62631 4.71113 4.75810 4.80328 4.84995 4.86013 4.88044 4.93921 5.03346 5.11540 5.12629 5.14465 5.16559 5.24647 5.29284 5.35313 5.42779 5.54962 5.57566 5.65439 5.71163 5.89398 5.96515 6.09652 6.15183 6.20165 6.33494 6.68680 6.85261 6.92383 7.60147 8.03880 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.018662 B = 0.002149 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.975984 B =13028.673081 C =14275.363417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 C -0.107 4.107 4 C 0.052 3.948 5 N -0.542 5.542 6 C 0.062 3.938 7 C -0.115 4.115 8 C 0.128 3.872 9 N -0.727 5.727 10 C 0.556 3.444 11 O -0.581 6.581 12 C -0.284 4.284 13 C -0.041 4.041 14 C -0.244 4.244 15 C -0.072 4.072 16 C -0.225 4.225 17 C 0.094 3.906 18 C -0.510 4.510 19 H 0.080 0.920 20 C -0.004 4.004 21 N -0.818 5.818 22 Si 1.118 2.882 23 H -0.255 1.255 24 H -0.276 1.276 25 H -0.267 1.267 26 C 0.043 3.957 27 C -0.109 4.109 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.029 0.971 35 H 0.077 0.923 36 H 0.033 0.967 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.046 0.954 41 H 0.051 0.949 42 H 0.407 0.593 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.125 0.875 46 H 0.089 0.911 47 H 0.283 0.717 48 H 0.085 0.915 49 H 0.026 0.974 50 H 0.074 0.926 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.307 3.848 7.390 24.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.114 4.114 3 C -0.145 4.145 4 C -0.076 4.076 5 N -0.267 5.267 6 C -0.066 4.066 7 C -0.153 4.153 8 C 0.003 3.997 9 N -0.382 5.382 10 C 0.349 3.651 11 O -0.463 6.463 12 C -0.289 4.289 13 C -0.060 4.060 14 C -0.262 4.262 15 C -0.091 4.091 16 C -0.245 4.245 17 C 0.090 3.910 18 C -0.538 4.538 19 H 0.098 0.902 20 C -0.220 4.220 21 N -0.442 5.442 22 Si 0.936 3.064 23 H -0.179 1.179 24 H -0.201 1.201 25 H -0.191 1.191 26 C -0.084 4.084 27 C -0.147 4.147 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.047 0.953 35 H 0.095 0.905 36 H 0.051 0.949 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.099 0.901 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.244 0.756 43 H 0.154 0.846 44 H 0.155 0.845 45 H 0.143 0.857 46 H 0.107 0.893 47 H 0.095 0.905 48 H 0.103 0.897 49 H 0.045 0.955 50 H 0.092 0.908 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -21.333 4.631 7.675 23.139 hybrid contribution -1.123 -0.865 0.290 1.447 sum -22.455 3.766 7.965 24.122 Atomic orbital electron populations 1.21777 0.94206 1.01991 1.02016 1.21198 0.96362 0.95967 0.97888 1.21622 0.93598 0.96764 1.02483 1.22151 0.96696 0.98950 0.89788 1.62035 1.11617 1.14753 1.38304 1.21946 0.87404 1.00367 0.96893 1.21785 0.92082 1.00993 1.00441 1.21164 0.95465 0.93483 0.89554 1.45743 1.07340 1.46568 1.38514 1.18457 0.82092 0.81659 0.82890 1.90661 1.53246 1.46758 1.55620 1.19818 0.95958 1.08574 1.04569 1.21163 0.97856 0.93033 0.93940 1.20824 0.95730 1.05934 1.03755 1.21170 0.93741 0.96399 0.97762 1.21209 0.98783 1.04212 1.00274 1.17924 0.92336 0.90344 0.90369 1.21120 0.96303 1.03716 1.32699 0.90235 1.28480 1.02656 0.99645 0.91178 1.70466 1.38394 1.03091 1.32216 0.82983 0.71975 0.72783 0.78703 1.17897 1.20058 1.19148 1.22300 0.96555 0.88555 1.00999 1.21643 0.93790 1.00822 0.98396 0.92592 0.92389 0.92276 0.91970 0.90559 0.91470 0.95302 0.90503 0.94922 0.90241 0.89674 0.90094 0.93571 0.93039 0.75618 0.84582 0.84452 0.85717 0.89272 0.90499 0.89724 0.95530 0.90772 0.91454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.21 71.98 0.66 -0.77 16 2 C -0.10 -1.17 2.79 -10.71 -0.03 -1.20 16 3 C -0.11 -1.37 5.38 30.64 0.16 -1.20 16 4 C 0.05 0.80 5.42 86.33 0.47 1.27 16 5 N -0.54 -9.52 4.81 -896.37 -4.31 -13.83 16 6 C 0.06 1.18 5.27 86.30 0.46 1.64 16 7 C -0.12 -2.30 4.58 30.59 0.14 -2.16 16 8 C 0.13 3.71 5.67 86.38 0.49 4.20 16 9 N -0.73 -24.83 5.51 -466.37 -2.57 -27.40 16 10 C 0.56 26.29 7.73 86.66 0.67 26.96 16 11 O -0.58 -32.54 13.55 -4.09 -0.06 -32.60 16 12 C -0.28 -13.89 5.92 -19.70 -0.12 -14.01 16 13 C -0.04 -1.61 9.53 22.50 0.21 -1.40 16 14 C -0.24 -9.18 10.03 22.41 0.22 -8.95 16 15 C -0.07 -3.04 10.01 22.26 0.22 -2.82 16 16 C -0.23 -11.50 7.86 22.72 0.18 -11.32 16 17 C 0.09 5.22 5.18 -21.11 -0.11 5.11 16 18 C -0.51 -29.99 7.66 23.41 0.18 -29.81 16 19 H 0.08 4.97 5.91 -2.91 -0.02 4.95 16 20 C 0.00 -0.25 5.04 85.37 0.43 0.18 16 21 N -0.82 -46.21 12.57 21.88 0.27 -45.94 16 22 Si 1.12 47.93 29.98 68.60 2.06 49.99 16 23 H -0.25 -9.96 7.11 99.48 0.71 -9.26 16 24 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 25 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 26 C 0.04 0.69 4.85 86.33 0.42 1.11 16 27 C -0.11 -1.46 5.38 30.65 0.16 -1.29 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.08 1.14 8.12 -2.38 -0.02 1.12 16 36 H 0.03 0.65 8.08 -2.39 -0.02 0.63 16 37 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.08 1.48 6.21 -2.39 -0.01 1.46 16 40 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.41 11.10 6.51 -92.71 -0.60 10.50 16 43 H 0.14 4.00 6.41 -2.91 -0.02 3.99 16 44 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 45 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 46 H 0.09 4.77 6.93 -2.91 -0.02 4.75 16 47 H 0.28 16.45 6.54 -92.71 -0.61 15.84 16 48 H 0.08 1.31 5.81 -2.39 -0.01 1.30 16 49 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 50 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 51 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -69.54 395.86 0.70 -68.84 By element: Atomic # 1 Polarization: 34.92 SS G_CDS: 0.47 Total: 35.39 kcal Atomic # 6 Polarization: -39.28 SS G_CDS: 4.83 Total: -34.45 kcal Atomic # 7 Polarization: -80.56 SS G_CDS: -6.60 Total: -87.17 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: -0.06 Total: -32.60 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 2.06 Total: 49.99 kcal Total: -69.54 0.70 -68.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600963437.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.053 kcal (2) G-P(sol) polarization free energy of solvation -69.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds