Wall clock time and date at job start Tue Mar 31 2020 15:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38662 * 120.11417 * 2 1 4 4 N 1.39707 * 120.00062 * 0.04459 * 3 2 1 5 5 C 1.46500 * 119.99776 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.46905 * 324.99741 * 5 4 3 7 7 C 1.53000 * 109.47305 * 84.99800 * 5 4 3 8 8 C 1.52997 * 109.47181 * 204.99955 * 5 4 3 9 9 C 1.53000 * 109.47492 * 59.99644 * 8 5 4 10 10 C 1.52997 * 109.47430 * 180.02562 * 8 5 4 11 11 C 1.38998 * 119.99418 * 180.02562 * 3 2 1 12 12 C 1.38261 * 120.23607 * 359.97438 * 11 3 2 13 13 C 1.37969 * 120.23437 * 359.76341 * 12 11 3 14 14 C 1.39517 * 120.11666 * 180.02562 * 2 1 3 15 15 C 1.47745 * 120.11510 * 359.97438 * 14 2 1 16 16 O 1.21589 * 120.00042 * 314.45390 * 15 14 2 17 17 N 1.34776 * 120.00029 * 134.17545 * 15 14 2 18 18 C 1.36867 * 120.00317 * 184.10121 * 17 15 14 19 19 H 1.08003 * 120.00062 * 134.12108 * 18 17 15 20 20 C 1.39050 * 119.99949 * 314.13031 * 18 17 15 21 21 N 1.31356 * 119.99947 * 339.03607 * 20 18 17 22 22 Si 1.86804 * 119.99866 * 159.03972 * 20 18 17 23 23 H 1.48495 * 109.47032 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47145 * 119.99719 * 22 20 18 25 25 H 1.48498 * 109.46876 * 239.99647 * 22 20 18 26 26 C 1.46503 * 119.99991 * 4.10833 * 17 15 14 27 27 C 1.52992 * 117.50144 * 183.07218 * 26 17 15 28 28 C 1.52992 * 117.50323 * 114.44694 * 26 17 15 29 29 H 1.09002 * 109.47531 * 273.92174 * 1 2 3 30 30 H 1.09004 * 109.47033 * 33.92129 * 1 2 3 31 31 H 1.08997 * 109.47376 * 153.92111 * 1 2 3 32 32 H 0.96994 * 120.00385 * 359.97438 * 4 3 2 33 33 H 1.08997 * 109.47043 * 180.02562 * 7 5 4 34 34 H 1.09007 * 109.46949 * 299.99602 * 7 5 4 35 35 H 1.08995 * 109.47292 * 59.99710 * 7 5 4 36 36 H 1.09002 * 109.47026 * 299.99711 * 8 5 4 37 37 H 1.08998 * 109.47274 * 179.97438 * 9 8 5 38 38 H 1.09000 * 109.46903 * 300.00417 * 9 8 5 39 39 H 1.09002 * 109.46930 * 60.00008 * 9 8 5 40 40 H 1.08999 * 109.47532 * 59.99333 * 10 8 5 41 41 H 1.08998 * 109.47577 * 179.97438 * 10 8 5 42 42 H 1.09007 * 109.47092 * 299.99893 * 10 8 5 43 43 H 1.08000 * 119.88064 * 179.97438 * 11 3 2 44 44 H 1.07997 * 119.88644 * 180.02562 * 12 11 3 45 45 H 1.07992 * 120.00130 * 180.25465 * 13 12 11 46 46 H 0.97005 * 119.99862 * 185.04177 * 21 20 18 47 47 H 1.09007 * 115.54865 * 328.77379 * 26 17 15 48 48 H 1.09006 * 117.49660 * 359.97438 * 27 26 17 49 49 H 1.09000 * 117.50155 * 145.01562 * 27 26 17 50 50 H 1.09002 * 117.49922 * 214.97812 * 28 26 17 51 51 H 1.09000 * 117.49736 * 0.02562 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2027 1.1995 0.0000 4 7 1.5066 2.4108 0.0009 5 6 2.2417 3.6780 0.0004 6 1 3.1528 3.5697 0.5889 7 6 2.6049 4.0563 -1.4369 8 6 1.3674 4.7750 0.6111 9 6 1.0041 4.3968 2.0484 10 6 2.1348 6.0986 0.6099 11 6 3.5927 1.1966 -0.0005 12 6 4.2864 0.0006 -0.0005 13 6 3.6039 -1.1985 0.0049 14 6 2.2070 -1.2068 -0.0005 15 6 1.4735 -2.4893 -0.0005 16 8 0.5318 -2.6511 0.7514 17 7 1.8446 -3.4779 -0.8380 18 6 1.1146 -4.6340 -0.8982 19 1 0.8521 -5.0578 -1.8564 20 6 0.7105 -5.2630 0.2743 21 7 1.3398 -5.0187 1.4011 22 14 -0.7272 -6.4554 0.2468 23 1 -1.2609 -6.5556 -1.1353 24 1 -0.2692 -7.7936 0.6993 25 1 -1.7947 -5.9645 1.1549 26 6 3.0296 -3.3151 -1.6839 27 6 3.3578 -4.4424 -2.6648 28 6 4.2201 -4.2385 -1.4176 29 1 -0.3634 0.0703 1.0252 30 1 -0.3633 0.8528 -0.5735 31 1 -0.3634 -0.9230 -0.4517 32 1 0.5366 2.4128 0.0012 33 1 3.1522 4.9989 -1.4373 34 1 3.2279 3.2747 -1.8720 35 1 1.6938 4.1645 -2.0254 36 1 0.4563 4.8832 0.0226 37 1 0.3816 5.1785 2.4836 38 1 0.4572 3.4539 2.0488 39 1 1.9152 4.2885 2.6369 40 1 2.3933 6.3679 -0.4141 41 1 1.5118 6.8803 1.0446 42 1 3.0461 5.9907 1.1982 43 1 4.1327 2.1319 -0.0010 44 1 5.3664 0.0049 -0.0005 45 1 4.1495 -2.1304 0.0090 46 1 1.1064 -5.5111 2.2036 47 1 3.2453 -2.2943 -1.9996 48 1 2.6922 -5.3055 -2.6805 49 1 3.7892 -4.1635 -3.6261 50 1 5.2189 -3.8253 -1.5583 51 1 4.1215 -4.9675 -0.6132 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601016016.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:26 Heat of formation + Delta-G solvation = 22.736225 kcal Electronic energy + Delta-G solvation = -29423.313146 eV Core-core repulsion = 25709.560385 eV Total energy + Delta-G solvation = -3713.752760 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -39.79668 -38.51842 -37.16281 -35.90260 -33.83103 -32.84584 -31.92090 -30.98941 -30.02064 -28.68162 -27.05228 -26.29760 -24.98894 -23.69352 -22.41174 -21.64296 -21.16406 -20.51323 -20.08749 -19.00443 -17.34278 -16.36689 -16.08639 -15.57531 -15.11758 -14.94868 -14.58765 -14.49829 -14.16984 -13.99103 -13.68833 -13.55634 -13.25920 -12.99508 -12.65462 -12.62590 -12.50162 -12.40960 -12.26620 -12.07222 -11.81516 -11.71949 -11.44916 -11.26538 -11.09424 -11.06324 -10.87831 -10.84620 -10.76837 -10.67763 -10.49918 -10.26517 -10.20655 -9.79147 -9.77247 -9.49350 -8.67188 -8.22075 -7.94440 -6.97804 -6.94978 -6.11154 -3.84370 1.77031 2.09368 3.30882 3.41221 3.43043 3.55337 4.05881 4.32324 4.44838 4.51375 4.67725 4.82356 4.88427 4.94736 5.14633 5.25650 5.25702 5.28502 5.37214 5.41729 5.44656 5.57769 5.63098 5.65255 5.68085 5.72286 5.75600 5.76832 5.83333 5.87258 5.95362 6.04123 6.05645 6.07814 6.18717 6.20818 6.23522 6.28545 6.35808 6.37881 6.57838 6.74060 6.82003 6.95100 7.04721 7.08114 7.21472 7.31947 7.65333 7.71307 7.97329 8.31960 9.07388 9.19487 9.67046 10.32272 10.96911 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017618 B = 0.003350 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.920556 B = 8355.104517 C = 9316.680420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.122 4.122 3 C 0.207 3.793 4 N -0.745 5.745 5 C 0.155 3.845 6 H 0.077 0.923 7 C -0.171 4.171 8 C -0.103 4.103 9 C -0.147 4.147 10 C -0.146 4.146 11 C -0.197 4.197 12 C -0.091 4.091 13 C -0.148 4.148 14 C -0.050 4.050 15 C 0.518 3.482 16 O -0.528 6.528 17 N -0.416 5.416 18 C -0.352 4.352 19 H 0.081 0.919 20 C 0.078 3.922 21 N -0.825 5.825 22 Si 0.909 3.091 23 H -0.270 1.270 24 H -0.286 1.286 25 H -0.280 1.280 26 C 0.072 3.928 27 C -0.182 4.182 28 C -0.197 4.197 29 H 0.064 0.936 30 H 0.044 0.956 31 H 0.078 0.922 32 H 0.396 0.604 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.127 0.873 46 H 0.264 0.736 47 H 0.108 0.892 48 H 0.104 0.896 49 H 0.081 0.919 50 H 0.080 0.920 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.809 17.903 -3.975 18.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.127 4.127 3 C 0.106 3.894 4 N -0.377 5.377 5 C 0.049 3.951 6 H 0.095 0.905 7 C -0.230 4.230 8 C -0.122 4.122 9 C -0.204 4.204 10 C -0.204 4.204 11 C -0.220 4.220 12 C -0.110 4.110 13 C -0.169 4.169 14 C -0.054 4.054 15 C 0.306 3.694 16 O -0.406 6.406 17 N -0.135 5.135 18 C -0.478 4.478 19 H 0.098 0.902 20 C -0.134 4.134 21 N -0.458 5.458 22 Si 0.736 3.264 23 H -0.195 1.195 24 H -0.213 1.213 25 H -0.206 1.206 26 C -0.034 4.034 27 C -0.220 4.220 28 C -0.236 4.236 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.232 0.768 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.132 0.868 44 H 0.133 0.867 45 H 0.145 0.855 46 H 0.074 0.926 47 H 0.126 0.874 48 H 0.122 0.878 49 H 0.099 0.901 50 H 0.098 0.902 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.383 17.955 -3.356 18.785 hybrid contribution -0.717 -0.668 0.122 0.988 sum 3.666 17.287 -3.235 17.965 Atomic orbital electron populations 1.20558 0.91228 1.02055 1.01699 1.19312 0.95835 0.90408 1.07186 1.17395 0.91104 0.85127 0.95786 1.44659 1.07750 1.01845 1.83484 1.20859 0.95265 0.83251 0.95676 0.90545 1.22364 1.01877 1.01460 0.97253 1.21363 0.98896 0.94750 0.97176 1.21817 1.01645 1.01520 0.95418 1.21859 1.00288 0.96169 1.02055 1.20542 0.91922 0.98036 1.11479 1.20726 0.98930 0.91951 0.99379 1.21303 0.93372 0.98243 1.03968 1.20175 0.93619 0.94110 0.97525 1.17808 0.84974 0.82204 0.84429 1.90622 1.29814 1.80848 1.39366 1.42659 1.21006 1.13654 1.36204 1.18923 1.33107 1.02844 0.92951 0.90183 1.25292 0.96823 0.96041 0.95231 1.69833 1.37530 1.37831 1.00565 0.86207 0.82588 0.79140 0.78460 1.19487 1.21253 1.20601 1.21883 0.89252 0.94281 0.97979 1.23104 1.03753 1.02298 0.92866 1.23244 0.94583 1.05360 1.00434 0.91700 0.93690 0.90343 0.76789 0.91963 0.92079 0.92584 0.91002 0.92890 0.92125 0.92637 0.92179 0.92523 0.92487 0.86834 0.86698 0.85516 0.92567 0.87416 0.87761 0.90058 0.90158 0.88264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.81 8.55 36.01 0.31 -1.50 16 2 C -0.12 -2.33 5.93 -103.99 -0.62 -2.95 16 3 C 0.21 3.27 6.61 -83.83 -0.55 2.71 16 4 N -0.75 -9.23 4.46 -52.20 -0.23 -9.46 16 5 C 0.16 1.52 1.85 -67.93 -0.13 1.39 16 6 H 0.08 0.79 6.48 -51.93 -0.34 0.45 16 7 C -0.17 -1.55 9.07 37.16 0.34 -1.21 16 8 C -0.10 -0.84 2.55 -90.62 -0.23 -1.07 16 9 C -0.15 -1.31 9.04 37.16 0.34 -0.98 16 10 C -0.15 -0.98 8.84 37.16 0.33 -0.65 16 11 C -0.20 -2.93 8.85 -39.29 -0.35 -3.28 16 12 C -0.09 -1.44 10.02 -39.67 -0.40 -1.83 16 13 C -0.15 -2.84 7.63 -39.14 -0.30 -3.14 16 14 C -0.05 -1.09 5.10 -104.99 -0.54 -1.62 16 15 C 0.52 13.55 5.84 -12.38 -0.07 13.48 16 16 O -0.53 -15.70 13.15 5.29 0.07 -15.63 16 17 N -0.42 -10.61 2.81 -108.83 -0.31 -10.91 16 18 C -0.35 -9.63 7.99 -15.00 -0.12 -9.75 16 19 H 0.08 2.13 7.09 -52.48 -0.37 1.76 16 20 C 0.08 2.19 4.29 -17.45 -0.07 2.11 16 21 N -0.83 -24.49 11.98 55.50 0.66 -23.83 16 22 Si 0.91 21.97 29.61 -169.99 -5.03 16.93 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 26 C 0.07 1.50 4.45 -67.94 -0.30 1.20 16 27 C -0.18 -3.38 9.81 -26.74 -0.26 -3.64 16 28 C -0.20 -3.75 9.50 -26.74 -0.25 -4.01 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.04 0.66 6.76 -51.93 -0.35 0.31 16 31 H 0.08 1.68 6.39 -51.93 -0.33 1.34 16 32 H 0.40 4.71 6.47 -40.82 -0.26 4.45 16 33 H 0.06 0.46 6.43 -51.93 -0.33 0.12 16 34 H 0.06 0.63 7.70 -51.93 -0.40 0.23 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.62 7.45 -51.93 -0.39 0.24 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.37 6.43 -51.93 -0.33 0.03 16 41 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.11 1.41 6.09 -52.49 -0.32 1.09 16 44 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 45 H 0.13 2.49 5.96 -52.49 -0.31 2.18 16 46 H 0.26 7.51 8.32 -40.82 -0.34 7.17 16 47 H 0.11 2.08 6.30 -51.93 -0.33 1.75 16 48 H 0.10 2.10 6.61 -51.93 -0.34 1.76 16 49 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 50 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 51 H 0.10 2.19 8.14 -51.93 -0.42 1.76 16 LS Contribution 393.18 15.07 5.93 5.93 Total: -1.00 -32.11 393.18 -9.99 -42.10 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -8.20 Total: 9.60 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -2.88 Total: -14.73 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 0.13 Total: -44.20 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: 0.07 Total: -15.63 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.11 -9.99 -42.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601016016.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.836 kcal (2) G-P(sol) polarization free energy of solvation -32.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds