Wall clock time and date at job start Tue Mar 31 2020 15:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38662 * 120.11417 * 2 1 4 4 N 1.39707 * 120.00062 * 0.04459 * 3 2 1 5 5 C 1.46500 * 119.99776 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.46905 * 324.99741 * 5 4 3 7 7 C 1.53000 * 109.47305 * 84.99800 * 5 4 3 8 8 C 1.52997 * 109.47181 * 204.99955 * 5 4 3 9 9 C 1.53000 * 109.47492 * 59.99644 * 8 5 4 10 10 C 1.52997 * 109.47430 * 180.02562 * 8 5 4 11 11 C 1.38998 * 119.99418 * 180.02562 * 3 2 1 12 12 C 1.38261 * 120.23607 * 359.97438 * 11 3 2 13 13 C 1.37969 * 120.23437 * 359.76341 * 12 11 3 14 14 C 1.39517 * 120.11666 * 180.02562 * 2 1 3 15 15 C 1.47745 * 120.11510 * 359.97438 * 14 2 1 16 16 O 1.21589 * 120.00042 * 314.45390 * 15 14 2 17 17 N 1.34776 * 120.00029 * 134.17545 * 15 14 2 18 18 C 1.36867 * 120.00317 * 184.10121 * 17 15 14 19 19 H 1.08003 * 120.00062 * 134.12108 * 18 17 15 20 20 C 1.39050 * 119.99949 * 314.13031 * 18 17 15 21 21 N 1.31356 * 119.99947 * 339.03607 * 20 18 17 22 22 Si 1.86804 * 119.99866 * 159.03972 * 20 18 17 23 23 H 1.48495 * 109.47032 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47145 * 119.99719 * 22 20 18 25 25 H 1.48498 * 109.46876 * 239.99647 * 22 20 18 26 26 C 1.46503 * 119.99991 * 4.10833 * 17 15 14 27 27 C 1.52992 * 117.50144 * 183.07218 * 26 17 15 28 28 C 1.52992 * 117.50323 * 114.44694 * 26 17 15 29 29 H 1.09002 * 109.47531 * 273.92174 * 1 2 3 30 30 H 1.09004 * 109.47033 * 33.92129 * 1 2 3 31 31 H 1.08997 * 109.47376 * 153.92111 * 1 2 3 32 32 H 0.96994 * 120.00385 * 359.97438 * 4 3 2 33 33 H 1.08997 * 109.47043 * 180.02562 * 7 5 4 34 34 H 1.09007 * 109.46949 * 299.99602 * 7 5 4 35 35 H 1.08995 * 109.47292 * 59.99710 * 7 5 4 36 36 H 1.09002 * 109.47026 * 299.99711 * 8 5 4 37 37 H 1.08998 * 109.47274 * 179.97438 * 9 8 5 38 38 H 1.09000 * 109.46903 * 300.00417 * 9 8 5 39 39 H 1.09002 * 109.46930 * 60.00008 * 9 8 5 40 40 H 1.08999 * 109.47532 * 59.99333 * 10 8 5 41 41 H 1.08998 * 109.47577 * 179.97438 * 10 8 5 42 42 H 1.09007 * 109.47092 * 299.99893 * 10 8 5 43 43 H 1.08000 * 119.88064 * 179.97438 * 11 3 2 44 44 H 1.07997 * 119.88644 * 180.02562 * 12 11 3 45 45 H 1.07992 * 120.00130 * 180.25465 * 13 12 11 46 46 H 0.97005 * 119.99862 * 185.04177 * 21 20 18 47 47 H 1.09007 * 115.54865 * 328.77379 * 26 17 15 48 48 H 1.09006 * 117.49660 * 359.97438 * 27 26 17 49 49 H 1.09000 * 117.50155 * 145.01562 * 27 26 17 50 50 H 1.09002 * 117.49922 * 214.97812 * 28 26 17 51 51 H 1.09000 * 117.49736 * 0.02562 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2027 1.1995 0.0000 4 7 1.5066 2.4108 0.0009 5 6 2.2417 3.6780 0.0004 6 1 3.1528 3.5697 0.5889 7 6 2.6049 4.0563 -1.4369 8 6 1.3674 4.7750 0.6111 9 6 1.0041 4.3968 2.0484 10 6 2.1348 6.0986 0.6099 11 6 3.5927 1.1966 -0.0005 12 6 4.2864 0.0006 -0.0005 13 6 3.6039 -1.1985 0.0049 14 6 2.2070 -1.2068 -0.0005 15 6 1.4735 -2.4893 -0.0005 16 8 0.5318 -2.6511 0.7514 17 7 1.8446 -3.4779 -0.8380 18 6 1.1146 -4.6340 -0.8982 19 1 0.8521 -5.0578 -1.8564 20 6 0.7105 -5.2630 0.2743 21 7 1.3398 -5.0187 1.4011 22 14 -0.7272 -6.4554 0.2468 23 1 -1.2609 -6.5556 -1.1353 24 1 -0.2692 -7.7936 0.6993 25 1 -1.7947 -5.9645 1.1549 26 6 3.0296 -3.3151 -1.6839 27 6 3.3578 -4.4424 -2.6648 28 6 4.2201 -4.2385 -1.4176 29 1 -0.3634 0.0703 1.0252 30 1 -0.3633 0.8528 -0.5735 31 1 -0.3634 -0.9230 -0.4517 32 1 0.5366 2.4128 0.0012 33 1 3.1522 4.9989 -1.4373 34 1 3.2279 3.2747 -1.8720 35 1 1.6938 4.1645 -2.0254 36 1 0.4563 4.8832 0.0226 37 1 0.3816 5.1785 2.4836 38 1 0.4572 3.4539 2.0488 39 1 1.9152 4.2885 2.6369 40 1 2.3933 6.3679 -0.4141 41 1 1.5118 6.8803 1.0446 42 1 3.0461 5.9907 1.1982 43 1 4.1327 2.1319 -0.0010 44 1 5.3664 0.0049 -0.0005 45 1 4.1495 -2.1304 0.0090 46 1 1.1064 -5.5111 2.2036 47 1 3.2453 -2.2943 -1.9996 48 1 2.6922 -5.3055 -2.6805 49 1 3.7892 -4.1635 -3.6261 50 1 5.2189 -3.8253 -1.5583 51 1 4.1215 -4.9675 -0.6132 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601016016.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:25 Heat of formation + Delta-G solvation = 5.099804 kcal Electronic energy + Delta-G solvation = -29424.077918 eV Core-core repulsion = 25709.560385 eV Total energy + Delta-G solvation = -3714.517533 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.24121 -39.94419 -38.30422 -37.67068 -34.95339 -34.75286 -33.31853 -32.86864 -31.06486 -29.82464 -28.03568 -27.42664 -26.91032 -24.73873 -23.78501 -23.15181 -22.67860 -21.89310 -21.26313 -20.43273 -18.84680 -17.92118 -17.44666 -17.02499 -16.89654 -16.31843 -15.99154 -15.74888 -15.38826 -15.21518 -15.10959 -14.77904 -14.42770 -14.36085 -14.20143 -14.06212 -13.83005 -13.46017 -13.30498 -13.15066 -13.07681 -12.97705 -12.79859 -12.74843 -12.67253 -12.41980 -12.25047 -12.15428 -12.01394 -11.96424 -11.77359 -11.73477 -11.47179 -11.33428 -11.22907 -10.78274 -10.71637 -10.06643 -9.51276 -8.94487 -8.22969 -8.16180 -5.99303 0.34286 0.75092 1.33413 1.41581 1.49412 2.26570 2.40141 2.57792 2.98573 3.09375 3.18012 3.40646 3.74793 3.97010 4.02318 4.06387 4.14342 4.17797 4.25706 4.26767 4.36737 4.45147 4.49547 4.55088 4.64171 4.66861 4.74635 4.78424 4.82826 4.84669 4.90532 4.92915 4.98205 4.99463 5.07074 5.09560 5.10180 5.22225 5.33278 5.33937 5.36510 5.43485 5.46502 5.48006 5.53660 5.53719 5.69491 5.82327 5.99802 6.22376 6.56961 6.87146 7.01764 7.20680 7.67009 8.34551 8.85756 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017618 B = 0.003350 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.920556 B = 8355.104517 C = 9316.680420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.146 4.146 3 C 0.219 3.781 4 N -0.737 5.737 5 C 0.152 3.848 6 H 0.079 0.921 7 C -0.166 4.166 8 C -0.097 4.097 9 C -0.147 4.147 10 C -0.143 4.143 11 C -0.186 4.186 12 C -0.076 4.076 13 C -0.163 4.163 14 C -0.081 4.081 15 C 0.507 3.493 16 O -0.583 6.583 17 N -0.432 5.432 18 C -0.362 4.362 19 H 0.081 0.919 20 C 0.028 3.972 21 N -0.866 5.866 22 Si 0.968 3.032 23 H -0.256 1.256 24 H -0.272 1.272 25 H -0.295 1.295 26 C 0.051 3.949 27 C -0.166 4.166 28 C -0.184 4.184 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.037 0.963 32 H 0.398 0.602 33 H 0.084 0.916 34 H 0.050 0.950 35 H 0.053 0.947 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.041 0.959 39 H 0.051 0.949 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.149 0.851 44 H 0.153 0.847 45 H 0.115 0.885 46 H 0.259 0.741 47 H 0.126 0.874 48 H 0.082 0.918 49 H 0.124 0.876 50 H 0.120 0.880 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.851 21.069 -5.643 22.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.151 4.151 3 C 0.115 3.885 4 N -0.368 5.368 5 C 0.047 3.953 6 H 0.097 0.903 7 C -0.225 4.225 8 C -0.116 4.116 9 C -0.204 4.204 10 C -0.201 4.201 11 C -0.208 4.208 12 C -0.095 4.095 13 C -0.183 4.183 14 C -0.085 4.085 15 C 0.297 3.703 16 O -0.465 6.465 17 N -0.151 5.151 18 C -0.489 4.489 19 H 0.099 0.901 20 C -0.179 4.179 21 N -0.501 5.501 22 Si 0.793 3.207 23 H -0.180 1.180 24 H -0.197 1.197 25 H -0.222 1.222 26 C -0.054 4.054 27 C -0.204 4.204 28 C -0.223 4.223 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.056 0.944 32 H 0.234 0.766 33 H 0.103 0.897 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.166 0.834 44 H 0.170 0.830 45 H 0.133 0.867 46 H 0.069 0.931 47 H 0.143 0.857 48 H 0.100 0.900 49 H 0.142 0.858 50 H 0.139 0.861 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.448 21.139 -5.073 22.675 hybrid contribution -1.314 -1.459 0.604 2.054 sum 5.134 19.680 -4.470 20.824 Atomic orbital electron populations 1.20397 0.91607 1.01311 1.01083 1.19391 0.95870 0.91059 1.08808 1.17416 0.91730 0.85074 0.94244 1.44833 1.08061 1.01787 1.82075 1.21096 0.95339 0.82220 0.96644 0.90326 1.22321 1.01900 1.02195 0.96065 1.21329 0.99003 0.94976 0.96307 1.21819 1.01421 1.00995 0.96210 1.21843 1.00243 0.95154 1.02825 1.20939 0.91442 0.99200 1.09243 1.21066 1.00690 0.90646 0.97053 1.21226 0.92156 0.99374 1.05587 1.19930 0.94777 0.92615 1.01142 1.18590 0.84605 0.83728 0.83330 1.90553 1.32256 1.82227 1.41469 1.42874 1.22456 1.13098 1.36636 1.19161 1.33546 1.03309 0.92893 0.90125 1.26104 0.98858 0.97994 0.94985 1.69951 1.39361 1.39651 1.01089 0.85301 0.79133 0.77650 0.78665 1.17960 1.19708 1.22219 1.22068 0.88516 0.95968 0.98810 1.23177 1.02624 1.00213 0.94343 1.23163 0.95966 1.03630 0.99511 0.92885 0.90315 0.94392 0.76599 0.89743 0.93111 0.92740 0.90688 0.91876 0.93944 0.92998 0.91213 0.91879 0.92223 0.83355 0.82960 0.86702 0.93138 0.85679 0.89951 0.85821 0.86150 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.34 8.55 71.24 0.61 -2.73 16 2 C -0.15 -5.64 5.93 -19.45 -0.12 -5.75 16 3 C 0.22 6.50 6.61 38.17 0.25 6.75 16 4 N -0.74 -16.52 4.46 -319.07 -1.42 -17.95 16 5 C 0.15 2.44 1.85 44.99 0.08 2.52 16 6 H 0.08 1.28 6.48 -2.39 -0.02 1.27 16 7 C -0.17 -2.35 9.07 71.98 0.65 -1.69 16 8 C -0.10 -1.29 2.55 -10.80 -0.03 -1.32 16 9 C -0.15 -2.33 9.04 71.98 0.65 -1.68 16 10 C -0.14 -1.38 8.84 71.98 0.64 -0.75 16 11 C -0.19 -4.85 8.85 22.46 0.20 -4.65 16 12 C -0.08 -2.16 10.02 22.21 0.22 -1.94 16 13 C -0.16 -6.15 7.63 22.56 0.17 -5.97 16 14 C -0.08 -3.61 5.10 -20.11 -0.10 -3.71 16 15 C 0.51 28.15 5.84 86.76 0.51 28.65 16 16 O -0.58 -37.24 13.15 -4.00 -0.05 -37.29 16 17 N -0.43 -23.07 2.81 -616.50 -1.73 -24.80 16 18 C -0.36 -20.76 7.99 84.10 0.67 -20.09 16 19 H 0.08 4.47 7.09 -2.91 -0.02 4.45 16 20 C 0.03 1.63 4.29 84.96 0.36 2.00 16 21 N -0.87 -54.53 11.98 21.68 0.26 -54.27 16 22 Si 0.97 47.17 29.61 68.60 2.03 49.20 16 23 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 24 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 25 H -0.30 -15.01 7.11 99.48 0.71 -14.30 16 26 C 0.05 2.14 4.45 44.99 0.20 2.34 16 27 C -0.17 -5.98 9.81 30.59 0.30 -5.68 16 28 C -0.18 -6.92 9.50 30.59 0.29 -6.63 16 29 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.08 2.34 6.76 -2.39 -0.02 2.32 16 31 H 0.04 1.74 6.39 -2.39 -0.02 1.72 16 32 H 0.40 8.76 6.47 -92.71 -0.60 8.16 16 33 H 0.08 0.84 6.43 -2.39 -0.02 0.83 16 34 H 0.05 0.84 7.70 -2.38 -0.02 0.82 16 35 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.04 0.82 7.45 -2.39 -0.02 0.80 16 39 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 0.56 6.43 -2.39 -0.02 0.54 16 41 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.06 0.56 8.14 -2.38 -0.02 0.55 16 43 H 0.15 2.89 6.09 -2.91 -0.02 2.87 16 44 H 0.15 3.19 8.06 -2.91 -0.02 3.16 16 45 H 0.11 4.53 5.96 -2.91 -0.02 4.51 16 46 H 0.26 15.69 8.32 -92.70 -0.77 14.92 16 47 H 0.13 4.76 6.30 -2.38 -0.02 4.74 16 48 H 0.08 3.35 6.61 -2.38 -0.02 3.33 16 49 H 0.12 3.41 8.14 -2.39 -0.02 3.39 16 50 H 0.12 3.52 8.14 -2.39 -0.02 3.50 16 51 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 Total: -1.00 -76.81 393.18 4.98 -71.83 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: 0.33 Total: 33.63 kcal Atomic # 6 Polarization: -25.90 SS G_CDS: 5.57 Total: -20.34 kcal Atomic # 7 Polarization: -94.13 SS G_CDS: -2.89 Total: -97.02 kcal Atomic # 8 Polarization: -37.24 SS G_CDS: -0.05 Total: -37.29 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -76.81 4.98 -71.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601016016.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.925 kcal (2) G-P(sol) polarization free energy of solvation -76.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds