Wall clock time and date at job start Tue Mar 31 2020 16:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46903 * 2 1 4 4 C 1.53003 * 109.47041 * 120.00182 * 2 1 3 5 5 N 1.46496 * 109.46860 * 175.00077 * 4 2 1 6 6 C 1.34775 * 119.99886 * 180.02562 * 5 4 2 7 7 O 1.21604 * 119.99914 * 359.97438 * 6 5 4 8 8 C 1.47433 * 120.00091 * 180.02562 * 6 5 4 9 9 C 1.39221 * 120.28438 * 354.15143 * 8 6 5 10 10 C 1.38223 * 120.09560 * 179.97438 * 9 8 6 11 11 C 1.38823 * 120.67289 * 0.02562 * 10 9 8 12 12 C 1.37596 * 120.57120 * 359.97438 * 11 10 9 13 13 C 1.40699 * 119.88178 * 359.73793 * 12 11 10 14 14 C 1.40894 * 120.32793 * 180.25447 * 13 12 11 15 15 H 1.07997 * 120.00078 * 146.08461 * 14 13 12 16 16 C 1.40270 * 120.00157 * 326.08175 * 14 13 12 17 17 N 1.30630 * 120.00046 * 350.69659 * 16 14 13 18 18 Si 1.86801 * 119.99980 * 170.68874 * 16 14 13 19 19 H 1.48503 * 109.46912 * 90.00730 * 18 16 14 20 20 H 1.48503 * 109.47103 * 210.00074 * 18 16 14 21 21 H 1.48493 * 109.47151 * 330.00176 * 18 16 14 22 22 N 1.46907 * 109.47010 * 240.00050 * 2 1 3 23 23 C 1.46843 * 111.00016 * 295.78995 * 22 2 1 24 24 C 1.53039 * 109.52295 * 185.83972 * 23 22 2 25 25 C 1.53124 * 109.27822 * 300.82180 * 24 23 22 26 26 C 1.52994 * 109.52082 * 177.55774 * 25 24 23 27 27 C 1.53122 * 109.15735 * 57.65396 * 25 24 23 28 28 C 1.46851 * 110.99735 * 60.00327 * 22 2 1 29 29 H 1.09004 * 109.47171 * 60.00190 * 1 2 3 30 30 H 1.09001 * 109.46807 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.46992 * 299.99845 * 1 2 3 32 32 H 1.09001 * 109.46666 * 294.99780 * 4 2 1 33 33 H 1.09004 * 109.46949 * 55.00335 * 4 2 1 34 34 H 0.96998 * 120.00297 * 359.97438 * 5 4 2 35 35 H 1.07998 * 119.95120 * 359.95700 * 9 8 6 36 36 H 1.08000 * 119.65771 * 179.97438 * 10 9 8 37 37 H 1.08003 * 119.71115 * 179.97438 * 11 10 9 38 38 H 1.08000 * 120.05849 * 179.97438 * 12 11 10 39 39 H 0.97002 * 120.00218 * 180.02562 * 17 16 14 40 40 H 1.09000 * 109.46202 * 305.85400 * 23 22 2 41 41 H 1.09002 * 109.46091 * 65.82405 * 23 22 2 42 42 H 1.08996 * 109.50324 * 180.87919 * 24 23 22 43 43 H 1.08998 * 109.50087 * 60.76180 * 24 23 22 44 44 H 1.08993 * 109.52112 * 297.74768 * 25 24 23 45 45 H 1.09001 * 109.47296 * 300.31419 * 26 25 24 46 46 H 1.08999 * 109.47113 * 60.31884 * 26 25 24 47 47 H 1.09005 * 109.47141 * 180.31771 * 26 25 24 48 48 H 1.09004 * 109.49683 * 182.40848 * 27 25 24 49 49 H 1.08999 * 109.50415 * 62.28722 * 27 25 24 50 50 H 1.09001 * 109.45866 * 294.16827 * 28 22 2 51 51 H 1.08991 * 109.46324 * 54.14113 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1905 6 6 4.1730 -1.4292 2.1906 7 8 3.5683 -1.8855 3.1419 8 6 5.6424 -1.5345 2.1319 9 6 6.3307 -1.1237 0.9936 10 6 7.7084 -1.2236 0.9429 11 6 8.4216 -1.7326 2.0197 12 6 7.7693 -2.1467 3.1582 13 6 6.3679 -2.0500 3.2377 14 6 5.6909 -2.4662 4.4011 15 1 4.7983 -1.9490 4.7207 16 6 6.1760 -3.5526 5.1441 17 7 7.1423 -4.2908 4.6669 18 14 5.4403 -3.9435 6.8161 19 1 4.3040 -4.8849 6.6490 20 1 6.4760 -4.5660 7.6793 21 1 4.9562 -2.6905 7.4490 22 7 2.0197 -0.6925 -1.1995 23 6 1.6328 -2.1090 -1.1842 24 6 2.2800 -2.8288 -2.3695 25 6 1.8216 -2.1692 -3.6731 26 6 2.5127 -2.8454 -4.8588 27 6 2.1937 -0.6842 -3.6428 28 6 1.5488 -0.0265 -2.4207 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.7516 -0.1583 2.1369 33 1 1.6054 -1.7199 1.2951 34 1 3.9823 -0.4628 0.4316 35 1 5.7874 -0.7266 0.1489 36 1 8.2352 -0.9033 0.0562 37 1 9.4978 -1.8042 1.9632 38 1 8.3324 -2.5418 3.9909 39 1 7.4775 -5.0423 5.1806 40 1 1.9684 -2.5671 -0.2538 41 1 0.5483 -2.1900 -1.2582 42 1 1.9801 -3.8767 -2.3668 43 1 3.3648 -2.7600 -2.2887 44 1 0.7411 -2.2721 -3.7730 45 1 3.5931 -2.7440 -4.7558 46 1 2.2473 -3.9024 -4.8795 47 1 2.1901 -2.3716 -5.7860 48 1 1.8319 -0.1999 -4.5499 49 1 3.2771 -0.5817 -3.5821 50 1 0.4648 -0.1174 -2.4890 51 1 1.8234 1.0277 -2.3883 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601020703.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:24 Heat of formation + Delta-G solvation = -27.794641 kcal Electronic energy + Delta-G solvation = -29139.254562 eV Core-core repulsion = 25423.310619 eV Total energy + Delta-G solvation = -3715.943943 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.90043 -38.64070 -36.81786 -35.88793 -33.79154 -33.12098 -31.06285 -30.90489 -29.85893 -29.37949 -27.33418 -26.26286 -25.07165 -23.37258 -22.74363 -21.90659 -20.83368 -20.41863 -19.31560 -19.09630 -17.44494 -16.45203 -16.18920 -15.42309 -15.16383 -14.85823 -14.78875 -14.54705 -14.34899 -14.10096 -13.95892 -13.65262 -13.20459 -13.11419 -12.86641 -12.70153 -12.63831 -12.50954 -12.22061 -11.98558 -11.87493 -11.74844 -11.60127 -11.41178 -11.27378 -11.05083 -10.90831 -10.77512 -10.74471 -10.62176 -10.45824 -10.34403 -10.19296 -10.00688 -9.59522 -9.20029 -8.35889 -8.30554 -8.16206 -7.49608 -7.27454 -6.72943 -4.31059 2.45520 2.88148 3.13477 3.21102 3.28805 3.73235 4.02718 4.16593 4.28203 4.61042 4.67536 4.70229 4.76145 4.79664 5.04863 5.18877 5.19320 5.21251 5.30496 5.41034 5.52141 5.54018 5.57709 5.60126 5.64318 5.71219 5.75676 5.82011 5.89780 5.92248 5.97243 6.04637 6.09283 6.11050 6.14060 6.20027 6.30386 6.37200 6.39279 6.71804 7.01941 7.04848 7.08217 7.18540 7.27260 7.37327 7.54824 7.71574 7.97559 8.06939 8.26108 8.56040 8.74715 8.90411 8.98159 9.54348 10.22494 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013517 B = 0.003330 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.034389 B = 8405.440632 C = 9248.246743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.069 3.931 3 H 0.088 0.912 4 C 0.133 3.867 5 N -0.737 5.737 6 C 0.563 3.437 7 O -0.544 6.544 8 C -0.258 4.258 9 C -0.055 4.055 10 C -0.247 4.247 11 C -0.096 4.096 12 C -0.150 4.150 13 C 0.146 3.854 14 C -0.417 4.417 15 H 0.104 0.896 16 C 0.070 3.930 17 N -0.795 5.795 18 Si 0.916 3.084 19 H -0.269 1.269 20 H -0.279 1.279 21 H -0.260 1.260 22 N -0.526 5.526 23 C 0.050 3.950 24 C -0.112 4.112 25 C -0.093 4.093 26 C -0.146 4.146 27 C -0.111 4.111 28 C 0.055 3.945 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.399 0.601 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.117 0.883 39 H 0.281 0.719 40 H 0.084 0.916 41 H 0.031 0.969 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.062 0.938 45 H 0.057 0.943 46 H 0.052 0.948 47 H 0.051 0.949 48 H 0.062 0.938 49 H 0.072 0.928 50 H 0.033 0.967 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.164 5.697 -13.928 18.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.040 4.040 3 H 0.106 0.894 4 C 0.008 3.992 5 N -0.392 5.392 6 C 0.357 3.643 7 O -0.423 6.423 8 C -0.263 4.263 9 C -0.074 4.074 10 C -0.266 4.266 11 C -0.115 4.115 12 C -0.169 4.169 13 C 0.142 3.858 14 C -0.445 4.445 15 H 0.122 0.878 16 C -0.148 4.148 17 N -0.421 5.421 18 Si 0.741 3.259 19 H -0.194 1.194 20 H -0.204 1.204 21 H -0.184 1.184 22 N -0.251 5.251 23 C -0.078 4.078 24 C -0.150 4.150 25 C -0.112 4.112 26 C -0.203 4.203 27 C -0.149 4.149 28 C -0.073 4.073 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.235 0.765 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.134 0.866 39 H 0.092 0.908 40 H 0.103 0.897 41 H 0.049 0.951 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.070 0.930 48 H 0.081 0.919 49 H 0.091 0.909 50 H 0.051 0.949 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.959 5.172 -13.166 17.300 hybrid contribution -0.940 -0.235 0.166 0.982 sum -10.898 4.937 -13.001 17.668 Atomic orbital electron populations 1.22384 0.96951 1.02491 1.02429 1.21988 0.93046 0.98758 0.90165 0.89393 1.21176 0.82690 0.99827 0.95551 1.45854 1.05746 1.62605 1.24971 1.18424 0.87969 0.76808 0.81137 1.90664 1.70260 1.48127 1.33267 1.19484 0.90648 1.19327 0.96880 1.20680 0.94105 0.97102 0.95479 1.20275 0.93827 1.13073 0.99451 1.20790 0.97566 0.98728 0.94400 1.21340 0.94462 1.03270 0.97866 1.17478 0.91154 0.86711 0.90466 1.20142 1.09286 1.10538 1.04556 0.87825 1.26100 0.93679 0.95746 0.99297 1.69724 1.21868 1.13425 1.37057 0.86173 0.79224 0.79628 0.80877 1.19399 1.20392 1.18371 1.62093 1.59476 1.02308 1.01203 1.22175 0.97280 0.88401 0.99912 1.21646 1.01860 0.98366 0.93082 1.21175 0.99576 0.95204 0.95197 1.21809 1.00941 1.00201 0.97386 1.21646 1.01804 0.94852 0.96580 1.22084 0.97093 0.98242 0.89892 0.92216 0.92195 0.91680 0.91948 0.92310 0.76506 0.89037 0.89238 0.89231 0.86554 0.90844 0.89735 0.95057 0.91796 0.90727 0.91958 0.92415 0.92847 0.93019 0.91946 0.90891 0.94866 0.90953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.74 8.51 37.16 0.32 -1.42 16 2 C 0.07 0.78 2.57 -67.71 -0.17 0.61 16 3 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 4 C 0.13 1.99 4.51 -4.04 -0.02 1.97 16 5 N -0.74 -13.21 5.34 -61.38 -0.33 -13.54 16 6 C 0.56 13.17 7.72 -12.52 -0.10 13.07 16 7 O -0.54 -14.47 13.60 5.27 0.07 -14.40 16 8 C -0.26 -6.41 5.92 -104.37 -0.62 -7.03 16 9 C -0.05 -1.19 9.52 -39.22 -0.37 -1.57 16 10 C -0.25 -5.35 10.03 -39.37 -0.39 -5.75 16 11 C -0.10 -2.21 10.01 -39.60 -0.40 -2.60 16 12 C -0.15 -3.88 8.62 -38.89 -0.34 -4.21 16 13 C 0.15 3.98 5.51 -106.54 -0.59 3.39 16 14 C -0.42 -11.64 7.67 -37.81 -0.29 -11.93 16 15 H 0.10 3.00 5.93 -52.49 -0.31 2.69 16 16 C 0.07 1.82 5.25 -17.30 -0.09 1.73 16 17 N -0.80 -20.98 11.13 55.56 0.62 -20.36 16 18 Si 0.92 20.03 29.57 -169.99 -5.03 15.00 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 20 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 21 H -0.26 -5.66 7.11 56.52 0.40 -5.25 16 22 N -0.53 -5.91 4.12 -226.69 -0.93 -6.84 16 23 C 0.05 0.59 4.67 -3.83 -0.02 0.57 16 24 C -0.11 -1.23 5.38 -26.65 -0.14 -1.37 16 25 C -0.09 -0.85 2.79 -90.50 -0.25 -1.10 16 26 C -0.15 -1.22 9.20 37.15 0.34 -0.88 16 27 C -0.11 -0.99 5.38 -26.65 -0.14 -1.13 16 28 C 0.05 0.51 4.89 -3.83 -0.02 0.49 16 29 H 0.06 0.51 6.54 -51.93 -0.34 0.17 16 30 H 0.06 0.60 6.63 -51.93 -0.34 0.25 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.95 6.51 -51.93 -0.34 0.61 16 34 H 0.40 6.59 6.20 -40.82 -0.25 6.33 16 35 H 0.09 1.70 6.44 -52.49 -0.34 1.36 16 36 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 38 H 0.12 3.07 6.58 -52.49 -0.35 2.72 16 39 H 0.28 6.74 8.29 -40.82 -0.34 6.40 16 40 H 0.08 1.21 6.01 -51.93 -0.31 0.90 16 41 H 0.03 0.35 6.71 -51.93 -0.35 0.00 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 49 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.03 0.30 6.63 -51.93 -0.34 -0.04 16 51 H 0.07 0.64 8.12 -51.93 -0.42 0.21 16 LS Contribution 389.51 15.07 5.87 5.87 Total: -1.00 -29.43 389.51 -11.35 -40.78 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -8.33 Total: 10.67 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -3.29 Total: -17.17 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: -0.64 Total: -40.74 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: 0.07 Total: -14.40 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.03 Total: 15.00 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.43 -11.35 -40.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601020703.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.981 kcal (2) G-P(sol) polarization free energy of solvation -29.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds