Wall clock time and date at job start Tue Mar 31 2020 16:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46903 * 2 1 4 4 C 1.53003 * 109.47041 * 120.00182 * 2 1 3 5 5 N 1.46496 * 109.46860 * 175.00077 * 4 2 1 6 6 C 1.34775 * 119.99886 * 180.02562 * 5 4 2 7 7 O 1.21604 * 119.99914 * 359.97438 * 6 5 4 8 8 C 1.47433 * 120.00091 * 180.02562 * 6 5 4 9 9 C 1.39221 * 120.28438 * 354.15143 * 8 6 5 10 10 C 1.38223 * 120.09560 * 179.97438 * 9 8 6 11 11 C 1.38823 * 120.67289 * 0.02562 * 10 9 8 12 12 C 1.37596 * 120.57120 * 359.97438 * 11 10 9 13 13 C 1.40699 * 119.88178 * 359.73793 * 12 11 10 14 14 C 1.40894 * 120.32793 * 180.25447 * 13 12 11 15 15 H 1.07997 * 120.00078 * 146.08461 * 14 13 12 16 16 C 1.40270 * 120.00157 * 326.08175 * 14 13 12 17 17 N 1.30630 * 120.00046 * 350.69659 * 16 14 13 18 18 Si 1.86801 * 119.99980 * 170.68874 * 16 14 13 19 19 H 1.48503 * 109.46912 * 90.00730 * 18 16 14 20 20 H 1.48503 * 109.47103 * 210.00074 * 18 16 14 21 21 H 1.48493 * 109.47151 * 330.00176 * 18 16 14 22 22 N 1.46907 * 109.47010 * 240.00050 * 2 1 3 23 23 C 1.46843 * 111.00016 * 295.78995 * 22 2 1 24 24 C 1.53039 * 109.52295 * 185.83972 * 23 22 2 25 25 C 1.53124 * 109.27822 * 300.82180 * 24 23 22 26 26 C 1.52994 * 109.52082 * 177.55774 * 25 24 23 27 27 C 1.53122 * 109.15735 * 57.65396 * 25 24 23 28 28 C 1.46851 * 110.99735 * 60.00327 * 22 2 1 29 29 H 1.09004 * 109.47171 * 60.00190 * 1 2 3 30 30 H 1.09001 * 109.46807 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.46992 * 299.99845 * 1 2 3 32 32 H 1.09001 * 109.46666 * 294.99780 * 4 2 1 33 33 H 1.09004 * 109.46949 * 55.00335 * 4 2 1 34 34 H 0.96998 * 120.00297 * 359.97438 * 5 4 2 35 35 H 1.07998 * 119.95120 * 359.95700 * 9 8 6 36 36 H 1.08000 * 119.65771 * 179.97438 * 10 9 8 37 37 H 1.08003 * 119.71115 * 179.97438 * 11 10 9 38 38 H 1.08000 * 120.05849 * 179.97438 * 12 11 10 39 39 H 0.97002 * 120.00218 * 180.02562 * 17 16 14 40 40 H 1.09000 * 109.46202 * 305.85400 * 23 22 2 41 41 H 1.09002 * 109.46091 * 65.82405 * 23 22 2 42 42 H 1.08996 * 109.50324 * 180.87919 * 24 23 22 43 43 H 1.08998 * 109.50087 * 60.76180 * 24 23 22 44 44 H 1.08993 * 109.52112 * 297.74768 * 25 24 23 45 45 H 1.09001 * 109.47296 * 300.31419 * 26 25 24 46 46 H 1.08999 * 109.47113 * 60.31884 * 26 25 24 47 47 H 1.09005 * 109.47141 * 180.31771 * 26 25 24 48 48 H 1.09004 * 109.49683 * 182.40848 * 27 25 24 49 49 H 1.08999 * 109.50415 * 62.28722 * 27 25 24 50 50 H 1.09001 * 109.45866 * 294.16827 * 28 22 2 51 51 H 1.08991 * 109.46324 * 54.14113 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1905 6 6 4.1730 -1.4292 2.1906 7 8 3.5683 -1.8855 3.1419 8 6 5.6424 -1.5345 2.1319 9 6 6.3307 -1.1237 0.9936 10 6 7.7084 -1.2236 0.9429 11 6 8.4216 -1.7326 2.0197 12 6 7.7693 -2.1467 3.1582 13 6 6.3679 -2.0500 3.2377 14 6 5.6909 -2.4662 4.4011 15 1 4.7983 -1.9490 4.7207 16 6 6.1760 -3.5526 5.1441 17 7 7.1423 -4.2908 4.6669 18 14 5.4403 -3.9435 6.8161 19 1 4.3040 -4.8849 6.6490 20 1 6.4760 -4.5660 7.6793 21 1 4.9562 -2.6905 7.4490 22 7 2.0197 -0.6925 -1.1995 23 6 1.6328 -2.1090 -1.1842 24 6 2.2800 -2.8288 -2.3695 25 6 1.8216 -2.1692 -3.6731 26 6 2.5127 -2.8454 -4.8588 27 6 2.1937 -0.6842 -3.6428 28 6 1.5488 -0.0265 -2.4207 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.7516 -0.1583 2.1369 33 1 1.6054 -1.7199 1.2951 34 1 3.9823 -0.4628 0.4316 35 1 5.7874 -0.7266 0.1489 36 1 8.2352 -0.9033 0.0562 37 1 9.4978 -1.8042 1.9632 38 1 8.3324 -2.5418 3.9909 39 1 7.4775 -5.0423 5.1806 40 1 1.9684 -2.5671 -0.2538 41 1 0.5483 -2.1900 -1.2582 42 1 1.9801 -3.8767 -2.3668 43 1 3.3648 -2.7600 -2.2887 44 1 0.7411 -2.2721 -3.7730 45 1 3.5931 -2.7440 -4.7558 46 1 2.2473 -3.9024 -4.8795 47 1 2.1901 -2.3716 -5.7860 48 1 1.8319 -0.1999 -4.5499 49 1 3.2771 -0.5817 -3.5821 50 1 0.4648 -0.1174 -2.4890 51 1 1.8234 1.0277 -2.3883 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601020703.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:23 Heat of formation + Delta-G solvation = -44.520743 kcal Electronic energy + Delta-G solvation = -29139.979860 eV Core-core repulsion = 25423.310619 eV Total energy + Delta-G solvation = -3716.669241 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.01534 -40.21918 -38.54027 -37.00452 -35.63338 -34.63132 -32.20453 -31.74928 -31.67593 -31.06484 -28.09806 -27.75307 -26.77347 -24.24141 -23.91607 -23.36279 -22.61387 -21.44278 -20.86082 -20.13150 -19.32862 -17.95188 -17.38191 -17.12267 -16.77809 -16.02459 -15.84206 -15.63533 -15.61590 -15.42780 -15.25689 -14.95566 -14.85832 -14.47185 -14.20473 -13.99323 -13.81510 -13.55311 -13.42521 -13.31251 -13.11886 -12.84760 -12.79837 -12.71043 -12.54534 -12.47079 -12.37905 -12.27170 -12.15582 -11.87790 -11.66991 -11.52169 -11.44144 -11.12529 -11.10094 -11.04296 -10.22167 -9.84111 -9.34320 -9.20350 -9.16811 -8.64952 -6.33087 0.56769 1.04051 1.33149 1.46674 1.50517 2.21860 2.41344 2.53910 2.81768 2.98673 3.71449 3.76571 3.88268 3.90213 3.95686 4.14264 4.30201 4.36446 4.39044 4.40327 4.45372 4.49657 4.60459 4.61595 4.65001 4.73355 4.78828 4.81201 4.85438 4.88105 4.97552 4.98231 5.06051 5.06984 5.13671 5.20171 5.25332 5.27911 5.31382 5.32674 5.37478 5.37796 5.59375 5.65554 5.76219 5.86952 6.09148 6.13750 6.16861 6.24395 6.37921 6.69406 6.86103 6.97159 7.08431 7.75568 8.32623 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013517 B = 0.003330 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.034389 B = 8405.440632 C = 9248.246743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.080 3.920 3 H 0.101 0.899 4 C 0.131 3.869 5 N -0.714 5.714 6 C 0.557 3.443 7 O -0.585 6.585 8 C -0.277 4.277 9 C -0.051 4.051 10 C -0.237 4.237 11 C -0.092 4.092 12 C -0.179 4.179 13 C 0.115 3.885 14 C -0.458 4.458 15 H 0.080 0.920 16 C 0.031 3.969 17 N -0.825 5.825 18 Si 0.979 3.021 19 H -0.272 1.272 20 H -0.256 1.256 21 H -0.263 1.263 22 N -0.536 5.536 23 C 0.055 3.945 24 C -0.110 4.110 25 C -0.088 4.088 26 C -0.144 4.144 27 C -0.108 4.108 28 C 0.055 3.945 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.045 0.955 34 H 0.409 0.591 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.119 0.881 38 H 0.100 0.900 39 H 0.288 0.712 40 H 0.051 0.949 41 H 0.040 0.960 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.069 0.931 45 H 0.049 0.951 46 H 0.052 0.948 47 H 0.065 0.935 48 H 0.082 0.918 49 H 0.062 0.938 50 H 0.043 0.957 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.715 7.176 -16.661 21.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.029 4.029 3 H 0.119 0.881 4 C 0.007 3.993 5 N -0.367 5.367 6 C 0.350 3.650 7 O -0.467 6.467 8 C -0.282 4.282 9 C -0.070 4.070 10 C -0.256 4.256 11 C -0.111 4.111 12 C -0.198 4.198 13 C 0.112 3.888 14 C -0.487 4.487 15 H 0.098 0.902 16 C -0.183 4.183 17 N -0.451 5.451 18 Si 0.800 3.200 19 H -0.197 1.197 20 H -0.180 1.180 21 H -0.187 1.187 22 N -0.261 5.261 23 C -0.073 4.073 24 C -0.148 4.148 25 C -0.107 4.107 26 C -0.201 4.201 27 C -0.146 4.146 28 C -0.072 4.072 29 H 0.097 0.903 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.246 0.754 35 H 0.146 0.854 36 H 0.149 0.851 37 H 0.137 0.863 38 H 0.118 0.882 39 H 0.099 0.901 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.084 0.916 48 H 0.100 0.900 49 H 0.080 0.920 50 H 0.061 0.939 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.505 6.680 -15.954 20.236 hybrid contribution -0.757 -0.608 0.804 1.260 sum -11.262 6.073 -15.150 19.830 Atomic orbital electron populations 1.22322 0.95181 1.02442 1.03630 1.21885 0.94270 0.98442 0.88309 0.88131 1.21343 0.80571 0.99642 0.97744 1.45606 1.07055 1.60545 1.23519 1.18453 0.87911 0.76981 0.81673 1.90639 1.70887 1.50076 1.35124 1.19871 0.91783 1.19124 0.97448 1.21035 0.94652 0.95984 0.95317 1.20779 0.93862 1.10836 1.00084 1.21165 0.99258 0.97090 0.93570 1.21290 0.94110 1.05435 0.98967 1.17852 0.92169 0.87547 0.91275 1.20103 1.09546 1.12388 1.06639 0.90181 1.26780 0.94113 0.95055 1.02357 1.69749 1.23012 1.14031 1.38358 0.85267 0.78722 0.79065 0.76952 1.19696 1.18027 1.18736 1.62086 1.60021 1.01990 1.02006 1.22045 0.97717 0.88900 0.98649 1.21623 1.00544 0.98601 0.94069 1.21143 0.99938 0.95449 0.94157 1.21787 1.00390 1.00312 0.97637 1.21637 1.01152 0.94538 0.97235 1.22164 0.97664 0.98603 0.88787 0.90306 0.92877 0.91174 0.92600 0.93708 0.75354 0.85409 0.85116 0.86283 0.88229 0.90117 0.93000 0.94191 0.91906 0.92618 0.91276 0.93148 0.92883 0.91631 0.89995 0.91959 0.93922 0.89790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.94 8.51 71.98 0.61 -2.33 16 2 C 0.08 1.65 2.57 44.92 0.12 1.76 16 3 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 4 C 0.13 3.95 4.51 86.38 0.39 4.34 16 5 N -0.71 -25.55 5.34 -466.37 -2.49 -28.04 16 6 C 0.56 26.87 7.72 86.67 0.67 27.54 16 7 O -0.58 -32.85 13.60 -4.04 -0.05 -32.91 16 8 C -0.28 -14.00 5.92 -19.70 -0.12 -14.11 16 9 C -0.05 -2.14 9.52 22.50 0.21 -1.93 16 10 C -0.24 -9.55 10.03 22.41 0.22 -9.33 16 11 C -0.09 -4.11 10.01 22.26 0.22 -3.89 16 12 C -0.18 -9.47 8.62 22.72 0.20 -9.27 16 13 C 0.12 6.54 5.51 -21.11 -0.12 6.42 16 14 C -0.46 -27.12 7.67 23.41 0.18 -26.94 16 15 H 0.08 4.99 5.93 -2.91 -0.02 4.97 16 16 C 0.03 1.71 5.25 85.37 0.45 2.16 16 17 N -0.82 -45.31 11.13 21.88 0.24 -45.07 16 18 Si 0.98 42.85 29.57 68.60 2.03 44.88 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 20 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 21 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 22 N -0.54 -10.97 4.12 -871.10 -3.59 -14.56 16 23 C 0.05 1.25 4.67 86.33 0.40 1.66 16 24 C -0.11 -2.34 5.38 30.65 0.16 -2.17 16 25 C -0.09 -1.42 2.79 -10.71 -0.03 -1.45 16 26 C -0.14 -2.11 9.20 71.98 0.66 -1.45 16 27 C -0.11 -1.59 5.38 30.65 0.16 -1.43 16 28 C 0.05 0.84 4.89 86.32 0.42 1.27 16 29 H 0.08 1.05 6.54 -2.39 -0.02 1.04 16 30 H 0.05 0.97 6.63 -2.39 -0.02 0.95 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 32 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.04 1.50 6.51 -2.39 -0.02 1.48 16 34 H 0.41 12.89 6.20 -92.71 -0.58 12.31 16 35 H 0.13 4.32 6.44 -2.91 -0.02 4.30 16 36 H 0.13 4.25 8.06 -2.91 -0.02 4.23 16 37 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 38 H 0.10 5.50 6.58 -2.91 -0.02 5.48 16 39 H 0.29 14.29 8.29 -92.71 -0.77 13.52 16 40 H 0.05 1.52 6.01 -2.39 -0.01 1.51 16 41 H 0.04 0.84 6.71 -2.39 -0.02 0.82 16 42 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 48 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 49 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.04 0.60 6.63 -2.39 -0.02 0.58 16 51 H 0.08 1.14 8.12 -2.39 -0.02 1.12 16 Total: -1.00 -68.10 389.51 1.31 -66.79 By element: Atomic # 1 Polarization: 37.71 SS G_CDS: 0.35 Total: 38.06 kcal Atomic # 6 Polarization: -33.98 SS G_CDS: 4.83 Total: -29.15 kcal Atomic # 7 Polarization: -81.84 SS G_CDS: -5.84 Total: -87.67 kcal Atomic # 8 Polarization: -32.85 SS G_CDS: -0.05 Total: -32.91 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -68.10 1.31 -66.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601020703.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.273 kcal (2) G-P(sol) polarization free energy of solvation -68.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds