Wall clock time and date at job start Tue Mar 31 2020 16:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47576 * 2 1 4 4 C 1.53011 * 109.46925 * 240.00140 * 2 1 3 5 5 N 1.46499 * 109.46737 * 295.30750 * 4 2 1 6 6 C 1.34780 * 119.99320 * 174.95775 * 5 4 2 7 7 O 1.21601 * 120.00326 * 0.02562 * 6 5 4 8 8 C 1.47439 * 119.99436 * 179.97438 * 6 5 4 9 9 C 1.39220 * 120.28391 * 5.00675 * 8 6 5 10 10 C 1.38225 * 120.09238 * 179.97438 * 9 8 6 11 11 C 1.38833 * 120.67247 * 0.02562 * 10 9 8 12 12 C 1.37592 * 120.56905 * 359.97438 * 11 10 9 13 13 C 1.40704 * 119.88409 * 359.73888 * 12 11 10 14 14 C 1.40893 * 120.32843 * 180.25462 * 13 12 11 15 15 H 1.08004 * 120.00223 * 144.14242 * 14 13 12 16 16 C 1.40276 * 119.99990 * 324.14494 * 14 13 12 17 17 N 1.30628 * 120.00136 * 170.63665 * 16 14 13 18 18 Si 1.86804 * 120.00092 * 350.64065 * 16 14 13 19 19 H 1.48497 * 109.47074 * 89.52211 * 18 16 14 20 20 H 1.48496 * 109.47125 * 209.52178 * 18 16 14 21 21 H 1.48496 * 109.46729 * 329.52518 * 18 16 14 22 22 N 1.46896 * 109.47303 * 120.00372 * 2 1 3 23 23 C 1.46851 * 111.00204 * 171.93086 * 22 2 1 24 24 C 1.53030 * 109.52594 * 185.83665 * 23 22 2 25 25 C 1.53120 * 109.27995 * 300.82378 * 24 23 22 26 26 C 1.52997 * 109.52319 * 177.56183 * 25 24 23 27 27 C 1.53115 * 109.16070 * 57.65044 * 25 24 23 28 28 C 1.46851 * 110.99974 * 296.14052 * 22 2 1 29 29 H 1.08999 * 109.47553 * 60.00046 * 1 2 3 30 30 H 1.08999 * 109.47097 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47096 * 299.99890 * 1 2 3 32 32 H 1.09003 * 109.46951 * 175.30701 * 4 2 1 33 33 H 1.09000 * 109.46889 * 55.31048 * 4 2 1 34 34 H 0.96993 * 120.00540 * 354.95962 * 5 4 2 35 35 H 1.07993 * 119.95504 * 359.95361 * 9 8 6 36 36 H 1.07998 * 119.66163 * 180.02562 * 10 9 8 37 37 H 1.07993 * 119.71154 * 179.97438 * 11 10 9 38 38 H 1.08003 * 120.05539 * 179.97438 * 12 11 10 39 39 H 0.96997 * 120.00330 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.46387 * 305.85718 * 23 22 2 41 41 H 1.09002 * 109.46348 * 65.82158 * 23 22 2 42 42 H 1.08999 * 109.50559 * 180.88364 * 24 23 22 43 43 H 1.08996 * 109.50405 * 60.76260 * 24 23 22 44 44 H 1.09002 * 109.52067 * 297.74397 * 25 24 23 45 45 H 1.09001 * 109.47217 * 300.31047 * 26 25 24 46 46 H 1.08997 * 109.47386 * 60.31530 * 26 25 24 47 47 H 1.09003 * 109.47026 * 180.31628 * 26 25 24 48 48 H 1.09004 * 109.50373 * 182.40736 * 27 25 24 49 49 H 1.09000 * 109.50221 * 62.29073 * 27 25 24 50 50 H 1.08997 * 109.45903 * 294.17642 * 28 22 2 51 51 H 1.08993 * 109.45634 * 54.14347 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2494 5 7 1.6460 -2.1312 -1.1941 6 6 1.8990 -2.9429 -2.2399 7 8 2.4546 -2.5051 -3.2290 8 6 1.5030 -4.3621 -2.1842 9 6 0.7760 -4.8460 -1.1000 10 6 0.4064 -6.1771 -1.0520 11 6 0.7531 -7.0458 -2.0779 12 6 1.4712 -6.5968 -3.1624 13 6 1.8546 -5.2452 -3.2384 14 6 2.5854 -4.7742 -4.3471 15 1 2.4064 -3.7800 -4.7290 16 6 3.5455 -5.5967 -4.9549 17 7 4.0912 -5.2377 -6.0861 18 14 4.0436 -7.2055 -4.1467 19 1 3.1548 -8.2952 -4.6239 20 1 5.4502 -7.5229 -4.5014 21 1 3.9217 -7.0772 -2.6723 22 7 2.0197 -0.6925 1.1993 23 6 3.4749 -0.8810 1.1410 24 6 3.9288 -1.7298 2.3307 25 6 3.5385 -1.0249 3.6327 26 6 3.9355 -1.8973 4.8253 27 6 2.0244 -0.7973 3.6467 28 6 1.6256 0.0245 2.4188 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.1267 -0.6490 -1.2924 33 1 1.6096 -0.2582 -2.1373 34 1 1.2032 -2.4806 -0.4051 35 1 0.5008 -4.1807 -0.2951 36 1 -0.1578 -6.5450 -0.2078 37 1 0.4566 -8.0828 -2.0243 38 1 1.7368 -7.2799 -3.9556 39 1 4.7553 -5.8063 -6.5063 40 1 3.7386 -1.3870 0.2122 41 1 3.9687 0.0900 1.1782 42 1 5.0109 -1.8563 2.2957 43 1 3.4460 -2.7060 2.2866 44 1 4.0517 -0.0653 3.6955 45 1 3.4236 -2.8574 4.7595 46 1 5.0134 -2.0588 4.8146 47 1 3.6522 -1.3973 5.7515 48 1 1.7458 -0.2576 4.5518 49 1 1.5116 -1.7588 3.6232 50 1 2.1281 0.9912 2.4500 51 1 0.5463 0.1761 2.4181 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601020704.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:27 Heat of formation + Delta-G solvation = -22.697758 kcal Electronic energy + Delta-G solvation = -29312.741745 eV Core-core repulsion = 25597.018820 eV Total energy + Delta-G solvation = -3715.722926 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.85128 -38.76297 -37.05655 -35.92667 -33.76624 -33.14548 -31.28185 -30.96733 -30.39817 -29.73993 -27.36277 -26.46656 -25.11622 -22.90613 -22.68940 -22.22326 -21.09907 -20.09554 -19.71980 -19.33755 -17.52252 -16.70195 -16.53182 -15.38390 -15.19893 -14.93097 -14.79553 -14.34884 -14.19701 -14.10698 -14.04390 -13.83297 -13.76219 -13.31872 -13.09009 -12.75142 -12.57087 -12.45593 -12.27085 -12.21878 -11.96614 -11.69135 -11.66323 -11.40693 -11.30094 -11.26449 -11.06983 -10.87241 -10.75584 -10.62261 -10.40593 -10.33446 -10.16547 -10.08801 -9.74585 -9.19306 -8.42776 -8.36481 -8.23701 -7.75355 -7.53742 -6.85048 -4.43185 2.17557 2.65569 3.11707 3.20353 3.31857 3.67224 3.98373 4.10078 4.14881 4.56279 4.65977 4.66375 4.67009 4.80704 4.98961 5.15650 5.23821 5.26425 5.30166 5.37964 5.45563 5.48094 5.51499 5.58731 5.68791 5.71110 5.78507 5.82884 5.87086 5.89206 5.92681 5.98269 6.01951 6.03257 6.06677 6.10081 6.21176 6.23724 6.33914 6.47655 6.57386 6.85316 6.99603 7.05358 7.15201 7.26172 7.31530 7.46184 7.65370 7.82061 8.07639 8.48496 8.53994 8.70644 8.92824 9.47726 10.11795 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013502 B = 0.003462 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.214285 B = 8084.796657 C = 8439.322766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.070 3.930 3 H 0.050 0.950 4 C 0.130 3.870 5 N -0.735 5.735 6 C 0.559 3.441 7 O -0.534 6.534 8 C -0.246 4.246 9 C -0.039 4.039 10 C -0.255 4.255 11 C -0.065 4.065 12 C -0.231 4.231 13 C 0.118 3.882 14 C -0.402 4.402 15 H 0.124 0.876 16 C 0.079 3.921 17 N -0.796 5.796 18 Si 0.909 3.091 19 H -0.268 1.268 20 H -0.291 1.291 21 H -0.244 1.244 22 N -0.530 5.530 23 C 0.050 3.950 24 C -0.111 4.111 25 C -0.094 4.094 26 C -0.146 4.146 27 C -0.110 4.110 28 C 0.054 3.946 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.399 0.601 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.286 0.714 40 H 0.087 0.913 41 H 0.028 0.972 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.062 0.938 45 H 0.056 0.944 46 H 0.053 0.947 47 H 0.051 0.949 48 H 0.062 0.938 49 H 0.072 0.928 50 H 0.028 0.972 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.820 8.312 17.773 19.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.038 4.038 3 H 0.067 0.933 4 C 0.005 3.995 5 N -0.391 5.391 6 C 0.352 3.648 7 O -0.412 6.412 8 C -0.251 4.251 9 C -0.058 4.058 10 C -0.274 4.274 11 C -0.084 4.084 12 C -0.250 4.250 13 C 0.113 3.887 14 C -0.429 4.429 15 H 0.141 0.859 16 C -0.141 4.141 17 N -0.420 5.420 18 Si 0.736 3.264 19 H -0.195 1.195 20 H -0.218 1.218 21 H -0.167 1.167 22 N -0.256 5.256 23 C -0.078 4.078 24 C -0.149 4.149 25 C -0.112 4.112 26 C -0.203 4.203 27 C -0.148 4.148 28 C -0.074 4.074 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.236 0.764 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.122 0.878 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.047 0.953 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.070 0.930 48 H 0.081 0.919 49 H 0.091 0.909 50 H 0.047 0.953 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.441 8.205 16.806 18.860 hybrid contribution 0.495 -0.086 0.632 0.808 sum -1.945 8.119 17.438 19.333 Atomic orbital electron populations 1.21853 0.93792 1.03040 1.01454 1.21908 0.96304 0.95670 0.89968 0.93255 1.21198 0.99298 0.83070 0.95909 1.45844 1.64269 1.08786 1.20192 1.18358 0.78406 0.86148 0.81924 1.90719 1.42342 1.76356 1.31750 1.19439 1.14098 0.93421 0.98114 1.20798 0.94813 0.94893 0.95295 1.20285 1.11817 0.94166 1.01171 1.20725 0.96403 0.97504 0.93742 1.21184 1.06873 0.96910 1.00053 1.17558 0.90362 0.90176 0.90611 1.20195 1.13438 1.03234 1.06047 0.85869 1.26375 0.95539 0.98931 0.93287 1.69565 1.21178 1.37448 1.13765 0.86392 0.76598 0.80937 0.82520 1.19453 1.21822 1.16738 1.61898 1.12934 1.49430 1.01314 1.22200 0.86957 0.98576 1.00042 1.21637 1.00443 0.99733 0.93052 1.21184 0.96032 0.98818 0.95186 1.21808 1.01194 0.99952 0.97364 1.21637 0.95667 1.00969 0.96544 1.22124 1.00658 0.94714 0.89883 0.91988 0.91376 0.92693 0.92417 0.91464 0.76436 0.88573 0.88632 0.88696 0.87756 0.90346 0.89450 0.95334 0.91723 0.90757 0.91913 0.92457 0.92832 0.93007 0.91933 0.90909 0.95333 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 8.95 37.16 0.33 -1.14 16 2 C 0.07 0.79 2.35 -67.71 -0.16 0.63 16 3 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 4 C 0.13 1.94 4.53 -4.04 -0.02 1.92 16 5 N -0.73 -12.71 4.90 -61.37 -0.30 -13.01 16 6 C 0.56 12.74 7.72 -12.51 -0.10 12.64 16 7 O -0.53 -14.25 13.53 5.28 0.07 -14.18 16 8 C -0.25 -5.82 5.92 -104.37 -0.62 -6.44 16 9 C -0.04 -0.79 9.52 -39.22 -0.37 -1.17 16 10 C -0.26 -5.09 10.03 -39.37 -0.39 -5.48 16 11 C -0.07 -1.38 10.01 -39.60 -0.40 -1.77 16 12 C -0.23 -5.55 7.04 -38.89 -0.27 -5.82 16 13 C 0.12 3.07 5.07 -106.54 -0.54 2.53 16 14 C -0.40 -11.43 8.32 -37.81 -0.31 -11.75 16 15 H 0.12 3.88 5.96 -52.48 -0.31 3.56 16 16 C 0.08 2.13 5.49 -17.30 -0.09 2.03 16 17 N -0.80 -21.93 13.92 55.56 0.77 -21.16 16 18 Si 0.91 21.11 24.48 -169.99 -4.16 16.95 16 19 H -0.27 -5.93 6.62 56.52 0.37 -5.56 16 20 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.24 -5.81 6.81 56.52 0.38 -5.43 16 22 N -0.53 -5.82 3.91 -226.69 -0.89 -6.71 16 23 C 0.05 0.58 5.04 -3.84 -0.02 0.56 16 24 C -0.11 -1.17 5.38 -26.65 -0.14 -1.32 16 25 C -0.09 -0.83 2.79 -90.50 -0.25 -1.08 16 26 C -0.15 -1.17 9.20 37.16 0.34 -0.83 16 27 C -0.11 -0.95 5.38 -26.66 -0.14 -1.09 16 28 C 0.05 0.50 5.28 -3.83 -0.02 0.48 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.78 7.27 -51.93 -0.38 0.40 16 31 H 0.05 0.48 6.37 -51.93 -0.33 0.15 16 32 H 0.06 0.91 6.49 -51.93 -0.34 0.58 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.40 6.27 5.46 -40.82 -0.22 6.05 16 35 H 0.10 1.63 6.43 -52.49 -0.34 1.30 16 36 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.10 2.48 4.77 -52.48 -0.25 2.23 16 39 H 0.29 7.08 8.29 -40.82 -0.34 6.74 16 40 H 0.09 1.22 5.84 -51.93 -0.30 0.92 16 41 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 50 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 51 H 0.08 0.66 6.13 -51.93 -0.32 0.34 16 LS Contribution 384.25 15.07 5.79 5.79 Total: -1.00 -29.75 384.25 -10.21 -39.96 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -8.31 Total: 9.46 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -3.18 Total: -17.10 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: -0.41 Total: -40.88 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: 0.07 Total: -14.18 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.16 Total: 16.95 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.75 -10.21 -39.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601020704.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.259 kcal (2) G-P(sol) polarization free energy of solvation -29.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds