Wall clock time and date at job start Tue Mar 31 2020 16:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47576 * 2 1 4 4 C 1.53011 * 109.46925 * 240.00140 * 2 1 3 5 5 N 1.46499 * 109.46737 * 295.30750 * 4 2 1 6 6 C 1.34780 * 119.99320 * 174.95775 * 5 4 2 7 7 O 1.21601 * 120.00326 * 0.02562 * 6 5 4 8 8 C 1.47439 * 119.99436 * 179.97438 * 6 5 4 9 9 C 1.39220 * 120.28391 * 5.00675 * 8 6 5 10 10 C 1.38225 * 120.09238 * 179.97438 * 9 8 6 11 11 C 1.38833 * 120.67247 * 0.02562 * 10 9 8 12 12 C 1.37592 * 120.56905 * 359.97438 * 11 10 9 13 13 C 1.40704 * 119.88409 * 359.73888 * 12 11 10 14 14 C 1.40893 * 120.32843 * 180.25462 * 13 12 11 15 15 H 1.08004 * 120.00223 * 144.14242 * 14 13 12 16 16 C 1.40276 * 119.99990 * 324.14494 * 14 13 12 17 17 N 1.30628 * 120.00136 * 170.63665 * 16 14 13 18 18 Si 1.86804 * 120.00092 * 350.64065 * 16 14 13 19 19 H 1.48497 * 109.47074 * 89.52211 * 18 16 14 20 20 H 1.48496 * 109.47125 * 209.52178 * 18 16 14 21 21 H 1.48496 * 109.46729 * 329.52518 * 18 16 14 22 22 N 1.46896 * 109.47303 * 120.00372 * 2 1 3 23 23 C 1.46851 * 111.00204 * 171.93086 * 22 2 1 24 24 C 1.53030 * 109.52594 * 185.83665 * 23 22 2 25 25 C 1.53120 * 109.27995 * 300.82378 * 24 23 22 26 26 C 1.52997 * 109.52319 * 177.56183 * 25 24 23 27 27 C 1.53115 * 109.16070 * 57.65044 * 25 24 23 28 28 C 1.46851 * 110.99974 * 296.14052 * 22 2 1 29 29 H 1.08999 * 109.47553 * 60.00046 * 1 2 3 30 30 H 1.08999 * 109.47097 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47096 * 299.99890 * 1 2 3 32 32 H 1.09003 * 109.46951 * 175.30701 * 4 2 1 33 33 H 1.09000 * 109.46889 * 55.31048 * 4 2 1 34 34 H 0.96993 * 120.00540 * 354.95962 * 5 4 2 35 35 H 1.07993 * 119.95504 * 359.95361 * 9 8 6 36 36 H 1.07998 * 119.66163 * 180.02562 * 10 9 8 37 37 H 1.07993 * 119.71154 * 179.97438 * 11 10 9 38 38 H 1.08003 * 120.05539 * 179.97438 * 12 11 10 39 39 H 0.96997 * 120.00330 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.46387 * 305.85718 * 23 22 2 41 41 H 1.09002 * 109.46348 * 65.82158 * 23 22 2 42 42 H 1.08999 * 109.50559 * 180.88364 * 24 23 22 43 43 H 1.08996 * 109.50405 * 60.76260 * 24 23 22 44 44 H 1.09002 * 109.52067 * 297.74397 * 25 24 23 45 45 H 1.09001 * 109.47217 * 300.31047 * 26 25 24 46 46 H 1.08997 * 109.47386 * 60.31530 * 26 25 24 47 47 H 1.09003 * 109.47026 * 180.31628 * 26 25 24 48 48 H 1.09004 * 109.50373 * 182.40736 * 27 25 24 49 49 H 1.09000 * 109.50221 * 62.29073 * 27 25 24 50 50 H 1.08997 * 109.45903 * 294.17642 * 28 22 2 51 51 H 1.08993 * 109.45634 * 54.14347 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2494 5 7 1.6460 -2.1312 -1.1941 6 6 1.8990 -2.9429 -2.2399 7 8 2.4546 -2.5051 -3.2290 8 6 1.5030 -4.3621 -2.1842 9 6 0.7760 -4.8460 -1.1000 10 6 0.4064 -6.1771 -1.0520 11 6 0.7531 -7.0458 -2.0779 12 6 1.4712 -6.5968 -3.1624 13 6 1.8546 -5.2452 -3.2384 14 6 2.5854 -4.7742 -4.3471 15 1 2.4064 -3.7800 -4.7290 16 6 3.5455 -5.5967 -4.9549 17 7 4.0912 -5.2377 -6.0861 18 14 4.0436 -7.2055 -4.1467 19 1 3.1548 -8.2952 -4.6239 20 1 5.4502 -7.5229 -4.5014 21 1 3.9217 -7.0772 -2.6723 22 7 2.0197 -0.6925 1.1993 23 6 3.4749 -0.8810 1.1410 24 6 3.9288 -1.7298 2.3307 25 6 3.5385 -1.0249 3.6327 26 6 3.9355 -1.8973 4.8253 27 6 2.0244 -0.7973 3.6467 28 6 1.6256 0.0245 2.4188 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.1267 -0.6490 -1.2924 33 1 1.6096 -0.2582 -2.1373 34 1 1.2032 -2.4806 -0.4051 35 1 0.5008 -4.1807 -0.2951 36 1 -0.1578 -6.5450 -0.2078 37 1 0.4566 -8.0828 -2.0243 38 1 1.7368 -7.2799 -3.9556 39 1 4.7553 -5.8063 -6.5063 40 1 3.7386 -1.3870 0.2122 41 1 3.9687 0.0900 1.1782 42 1 5.0109 -1.8563 2.2957 43 1 3.4460 -2.7060 2.2866 44 1 4.0517 -0.0653 3.6955 45 1 3.4236 -2.8574 4.7595 46 1 5.0134 -2.0588 4.8146 47 1 3.6522 -1.3973 5.7515 48 1 1.7458 -0.2576 4.5518 49 1 1.5116 -1.7588 3.6232 50 1 2.1281 0.9912 2.4500 51 1 0.5463 0.1761 2.4181 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601020704.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:26 Heat of formation + Delta-G solvation = -41.275439 kcal Electronic energy + Delta-G solvation = -29313.547334 eV Core-core repulsion = 25597.018820 eV Total energy + Delta-G solvation = -3716.528514 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.06678 -40.21553 -38.71646 -37.08371 -35.59009 -34.59929 -32.38303 -32.24637 -31.99856 -31.14438 -28.11992 -27.82162 -26.85803 -24.13041 -23.68528 -23.41668 -22.80305 -21.20383 -21.08047 -20.44859 -19.41683 -18.37421 -17.55804 -17.15322 -16.57959 -16.05525 -15.96189 -15.79899 -15.58691 -15.36324 -15.30553 -15.04250 -14.89205 -14.54527 -14.47155 -14.18330 -14.04986 -13.80574 -13.63377 -13.25620 -13.17432 -12.96213 -12.65855 -12.57862 -12.48770 -12.47213 -12.25520 -12.18114 -12.07654 -12.06573 -11.92315 -11.59838 -11.50204 -11.09831 -11.04474 -10.97309 -10.28053 -9.89218 -9.48406 -9.39027 -9.26294 -8.80463 -6.46631 0.37859 0.85426 1.23574 1.37338 1.46454 2.10521 2.30417 2.49609 2.74039 2.92519 3.56595 3.67517 3.87261 3.89668 3.97552 4.04108 4.24127 4.30679 4.34516 4.36505 4.44934 4.46434 4.50449 4.61811 4.68779 4.74752 4.75598 4.79551 4.82810 4.85468 4.87850 4.92643 4.93940 5.03931 5.05777 5.10267 5.18637 5.27811 5.31548 5.32055 5.35856 5.41389 5.49521 5.58693 5.68662 5.72555 5.89697 5.98825 6.13164 6.21689 6.29817 6.50083 6.72497 6.81722 7.00717 7.72163 8.23873 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013502 B = 0.003462 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.214285 B = 8084.796657 C = 8439.322766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.081 3.919 3 H 0.064 0.936 4 C 0.128 3.872 5 N -0.708 5.708 6 C 0.551 3.449 7 O -0.583 6.583 8 C -0.263 4.263 9 C -0.037 4.037 10 C -0.230 4.230 11 C -0.061 4.061 12 C -0.252 4.252 13 C 0.101 3.899 14 C -0.450 4.450 15 H 0.071 0.929 16 C 0.035 3.965 17 N -0.851 5.851 18 Si 0.969 3.031 19 H -0.247 1.247 20 H -0.281 1.281 21 H -0.252 1.252 22 N -0.535 5.535 23 C 0.052 3.948 24 C -0.108 4.108 25 C -0.090 4.090 26 C -0.143 4.143 27 C -0.107 4.107 28 C 0.054 3.946 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.044 0.956 33 H 0.055 0.945 34 H 0.411 0.589 35 H 0.135 0.865 36 H 0.143 0.857 37 H 0.136 0.864 38 H 0.102 0.898 39 H 0.292 0.708 40 H 0.056 0.944 41 H 0.033 0.967 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.066 0.934 45 H 0.052 0.948 46 H 0.052 0.948 47 H 0.064 0.936 48 H 0.081 0.919 49 H 0.066 0.934 50 H 0.033 0.967 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.986 7.294 22.574 24.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.028 4.028 3 H 0.082 0.918 4 C 0.004 3.996 5 N -0.363 5.363 6 C 0.344 3.656 7 O -0.465 6.465 8 C -0.267 4.267 9 C -0.056 4.056 10 C -0.249 4.249 11 C -0.079 4.079 12 C -0.271 4.271 13 C 0.097 3.903 14 C -0.479 4.479 15 H 0.089 0.911 16 C -0.178 4.178 17 N -0.478 5.478 18 Si 0.792 3.208 19 H -0.172 1.172 20 H -0.208 1.208 21 H -0.176 1.176 22 N -0.261 5.261 23 C -0.075 4.075 24 C -0.146 4.146 25 C -0.108 4.108 26 C -0.201 4.201 27 C -0.144 4.144 28 C -0.073 4.073 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.249 0.751 35 H 0.153 0.847 36 H 0.161 0.839 37 H 0.154 0.846 38 H 0.120 0.880 39 H 0.103 0.897 40 H 0.074 0.926 41 H 0.051 0.949 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.083 0.917 48 H 0.100 0.900 49 H 0.085 0.915 50 H 0.052 0.948 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.644 7.201 21.658 23.292 hybrid contribution 0.968 0.330 -0.584 1.178 sum -3.676 7.531 21.075 22.680 Atomic orbital electron populations 1.21831 0.92427 1.02770 1.02697 1.21805 0.97166 0.95553 0.88258 0.91849 1.21327 0.98645 0.81773 0.97866 1.45573 1.62602 1.09316 1.18835 1.18545 0.78024 0.86737 0.82320 1.90721 1.44593 1.77251 1.33952 1.19830 1.14372 0.93673 0.98867 1.21187 0.93366 0.96191 0.94823 1.20929 1.09137 0.93344 1.01443 1.21233 0.94353 0.99867 0.92482 1.21290 1.08221 0.95903 1.01641 1.17808 0.90091 0.91993 0.90412 1.19951 1.16997 1.01834 1.09144 0.91055 1.27103 0.94997 1.02057 0.93645 1.69622 1.23208 1.39424 1.15574 0.85483 0.77052 0.77547 0.80708 1.17172 1.20781 1.17594 1.61913 1.12276 1.50022 1.01926 1.22097 0.87736 0.98621 0.99092 1.21606 1.00238 0.99035 0.93748 1.21156 0.96566 0.98812 0.94303 1.21780 1.01121 0.99676 0.97475 1.21626 0.95011 1.00792 0.96993 1.22215 1.01464 0.94754 0.88903 0.91986 0.92324 0.90291 0.93781 0.92677 0.75084 0.84740 0.83875 0.84597 0.87980 0.89715 0.92558 0.94924 0.91888 0.92077 0.91600 0.92873 0.92937 0.91716 0.90034 0.91538 0.94848 0.89159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 8.95 71.98 0.64 -1.86 16 2 C 0.08 1.69 2.35 44.92 0.11 1.80 16 3 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 4 C 0.13 3.91 4.53 86.38 0.39 4.31 16 5 N -0.71 -24.64 4.90 -466.34 -2.28 -26.92 16 6 C 0.55 26.19 7.72 86.67 0.67 26.86 16 7 O -0.58 -33.83 13.53 -4.03 -0.05 -33.88 16 8 C -0.26 -12.48 5.92 -19.70 -0.12 -12.60 16 9 C -0.04 -1.37 9.52 22.50 0.21 -1.16 16 10 C -0.23 -7.87 10.03 22.41 0.22 -7.64 16 11 C -0.06 -2.31 10.01 22.26 0.22 -2.09 16 12 C -0.25 -11.79 7.04 22.72 0.16 -11.63 16 13 C 0.10 5.41 5.07 -21.11 -0.11 5.30 16 14 C -0.45 -27.65 8.32 23.42 0.19 -27.45 16 15 H 0.07 5.00 5.96 -2.91 -0.02 4.99 16 16 C 0.04 2.05 5.49 85.37 0.47 2.52 16 17 N -0.85 -50.66 13.92 21.88 0.30 -50.35 16 18 Si 0.97 44.79 24.48 68.60 1.68 46.46 16 19 H -0.25 -10.39 6.62 99.48 0.66 -9.73 16 20 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 21 H -0.25 -11.76 6.81 99.48 0.68 -11.08 16 22 N -0.54 -10.67 3.91 -871.12 -3.41 -14.08 16 23 C 0.05 1.18 5.04 86.32 0.43 1.62 16 24 C -0.11 -2.17 5.38 30.64 0.16 -2.01 16 25 C -0.09 -1.37 2.79 -10.72 -0.03 -1.40 16 26 C -0.14 -1.94 9.20 71.98 0.66 -1.28 16 27 C -0.11 -1.46 5.38 30.64 0.16 -1.30 16 28 C 0.05 0.80 5.28 86.32 0.46 1.26 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.06 1.17 7.27 -2.39 -0.02 1.15 16 31 H 0.08 1.06 6.37 -2.39 -0.02 1.05 16 32 H 0.04 1.48 6.49 -2.39 -0.02 1.46 16 33 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.41 12.20 5.46 -92.71 -0.51 11.70 16 35 H 0.13 3.92 6.43 -2.91 -0.02 3.90 16 36 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 37 H 0.14 4.08 8.06 -2.91 -0.02 4.05 16 38 H 0.10 4.77 4.77 -2.91 -0.01 4.75 16 39 H 0.29 15.54 8.29 -92.71 -0.77 14.77 16 40 H 0.06 1.62 5.84 -2.39 -0.01 1.61 16 41 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.05 0.76 8.14 -2.39 -0.02 0.75 16 46 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 48 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 49 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 50 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 51 H 0.09 1.15 6.13 -2.39 -0.01 1.13 16 Total: -1.00 -72.36 384.25 1.50 -70.86 By element: Atomic # 1 Polarization: 34.33 SS G_CDS: 0.34 Total: 34.67 kcal Atomic # 6 Polarization: -31.68 SS G_CDS: 4.92 Total: -26.76 kcal Atomic # 7 Polarization: -85.96 SS G_CDS: -5.39 Total: -91.35 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -0.05 Total: -33.88 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.68 Total: 46.46 kcal Total: -72.36 1.50 -70.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601020704.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.587 kcal (2) G-P(sol) polarization free energy of solvation -72.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds