Wall clock time and date at job start Tue Mar 31 2020 16:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46840 * 110.99139 * 2 1 4 4 C 1.53044 * 109.51114 * 185.85033 * 3 2 1 5 5 C 1.53114 * 109.27863 * 300.81542 * 4 3 2 6 6 C 1.53118 * 109.16210 * 57.65397 * 5 4 3 7 7 C 1.52998 * 109.50420 * 182.40119 * 6 5 4 8 8 C 1.53001 * 109.50103 * 62.28747 * 6 5 4 9 9 C 1.46849 * 110.99787 * 124.20610 * 2 1 3 10 10 H 1.08998 * 109.46236 * 294.16339 * 9 2 1 11 11 C 1.52995 * 109.46214 * 54.14366 * 9 2 1 12 12 N 1.46505 * 109.47005 * 188.50228 * 11 9 2 13 13 C 1.34781 * 119.99850 * 186.50253 * 12 11 9 14 14 O 1.21602 * 120.00024 * 359.97438 * 13 12 11 15 15 C 1.47428 * 119.99767 * 180.02562 * 13 12 11 16 16 C 1.39227 * 120.28295 * 355.06437 * 15 13 12 17 17 C 1.38224 * 120.09541 * 179.97438 * 16 15 13 18 18 C 1.38828 * 120.67115 * 0.02562 * 17 16 15 19 19 C 1.37596 * 120.57361 * 0.02562 * 18 17 16 20 20 C 1.40709 * 119.88158 * 359.97119 * 19 18 17 21 21 C 1.40886 * 120.32852 * 180.02562 * 20 19 18 22 22 H 1.08000 * 119.99563 * 143.06901 * 21 20 19 23 23 C 1.40274 * 120.00076 * 323.07305 * 21 20 19 24 24 N 1.30628 * 120.00136 * 350.98292 * 23 21 20 25 25 Si 1.86800 * 120.00083 * 170.98215 * 23 21 20 26 26 H 1.48493 * 109.47346 * 89.99789 * 25 23 21 27 27 H 1.48496 * 109.47319 * 210.00193 * 25 23 21 28 28 H 1.48502 * 109.46802 * 329.99918 * 25 23 21 29 29 H 1.08996 * 109.46481 * 287.88783 * 1 2 3 30 30 H 1.09001 * 109.46573 * 47.88589 * 1 2 3 31 31 H 1.08994 * 109.47486 * 167.88759 * 1 2 3 32 32 H 1.08996 * 109.47229 * 65.83667 * 3 2 1 33 33 H 1.08995 * 109.46636 * 305.85599 * 3 2 1 34 34 H 1.09003 * 109.49965 * 180.87628 * 4 3 2 35 35 H 1.09002 * 109.53426 * 60.77933 * 4 3 2 36 36 H 1.09007 * 109.52413 * 297.74912 * 5 4 3 37 37 H 1.09007 * 109.52477 * 177.56117 * 5 4 3 38 38 H 1.09004 * 109.46995 * 188.00747 * 7 6 5 39 39 H 1.08992 * 109.47377 * 308.01433 * 7 6 5 40 40 H 1.09000 * 109.46931 * 68.01907 * 7 6 5 41 41 H 1.09006 * 109.47370 * 300.19647 * 8 6 5 42 42 H 1.08999 * 109.47345 * 60.19865 * 8 6 5 43 43 H 1.08997 * 109.47284 * 180.20087 * 8 6 5 44 44 H 1.09007 * 109.47622 * 68.50283 * 11 9 2 45 45 H 1.09000 * 109.47107 * 308.50329 * 11 9 2 46 46 H 0.96992 * 120.00067 * 6.50796 * 12 11 9 47 47 H 1.08007 * 119.95545 * 359.97438 * 16 15 13 48 48 H 1.07994 * 119.66610 * 179.97438 * 17 16 15 49 49 H 1.07997 * 119.71057 * 179.71710 * 18 17 16 50 50 H 1.08001 * 120.05977 * 179.97438 * 19 18 17 51 51 H 0.97000 * 120.00322 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9951 1.3709 0.0000 4 6 3.5180 1.3341 -0.1470 5 6 4.1188 0.5369 1.0140 6 6 3.5181 -0.8715 1.0206 7 6 4.0683 -1.6558 2.2135 8 6 3.8874 -1.5904 -0.2785 9 6 1.9953 -0.7707 1.1338 10 1 1.7327 -0.2706 2.0660 11 6 1.3891 -2.1754 1.1205 12 7 1.7515 -2.8754 2.3555 13 6 1.4385 -4.1773 2.5088 14 8 0.8549 -4.7708 1.6224 15 6 1.8027 -4.8815 3.7518 16 6 2.5590 -4.2379 4.7276 17 6 2.8979 -4.9016 5.8917 18 6 2.4919 -6.2122 6.1035 19 6 1.7446 -6.8750 5.1572 20 6 1.3862 -6.2219 3.9635 21 6 0.6208 -6.8914 2.9884 22 1 -0.1272 -6.3527 2.4256 23 6 0.8301 -8.2575 2.7487 24 7 1.8461 -8.8687 3.2969 25 14 -0.3442 -9.2029 1.6456 26 1 0.1346 -9.1373 0.2415 27 1 -0.4014 -10.6207 2.0833 28 1 -1.6993 -8.6021 1.7351 29 1 -0.3632 0.3157 0.9780 30 1 -0.3632 0.6892 -0.7624 31 1 -0.3634 -1.0047 -0.2156 32 1 1.7325 1.8609 0.9376 33 1 1.5632 1.9257 -0.8329 34 1 3.9098 2.3512 -0.1314 35 1 3.7816 0.8571 -1.0910 36 1 3.8889 1.0355 1.9557 37 1 5.1998 0.4713 0.8899 38 1 3.7543 -2.6971 2.1397 39 1 5.1569 -1.6035 2.2118 40 1 3.6852 -1.2257 3.1389 41 1 3.4965 -1.0299 -1.1278 42 1 4.9720 -1.6619 -0.3586 43 1 3.4565 -2.5916 -0.2748 44 1 1.7728 -2.7287 0.2633 45 1 0.3039 -2.1021 1.0495 46 1 2.2167 -2.4018 3.0627 47 1 2.8815 -3.2184 4.5747 48 1 3.4851 -4.3959 6.6438 49 1 2.7693 -6.7176 7.0167 50 1 1.4335 -7.8946 5.3304 51 1 1.9906 -9.8135 3.1314 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601542063.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:11 Heat of formation + Delta-G solvation = -8.673028 kcal Electronic energy + Delta-G solvation = -29757.430519 eV Core-core repulsion = 26042.315751 eV Total energy + Delta-G solvation = -3715.114768 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.48411 -38.67717 -36.75261 -35.20569 -34.40898 -33.60092 -31.82725 -30.00076 -29.59502 -27.96370 -27.19431 -26.70430 -25.65027 -24.83794 -22.24360 -21.54033 -21.40413 -20.70176 -19.41605 -18.41613 -17.44252 -16.37139 -15.79053 -15.70564 -15.55380 -15.17685 -14.82151 -14.34853 -14.27688 -14.10860 -13.60090 -13.49815 -13.27495 -13.17896 -12.92574 -12.69013 -12.50196 -12.40399 -12.08356 -12.05251 -11.82871 -11.70919 -11.57539 -11.39564 -11.25510 -11.08595 -11.06826 -10.90676 -10.67467 -10.50477 -10.49298 -10.23196 -10.06672 -10.03904 -9.65156 -9.22477 -8.45466 -8.36164 -8.18160 -7.57807 -7.31397 -6.75975 -4.35271 2.37644 2.82876 3.12736 3.20202 3.25389 3.56364 4.01551 4.19856 4.23788 4.54504 4.62299 4.70829 4.73367 4.90179 5.11551 5.14332 5.28337 5.32175 5.38762 5.42031 5.50445 5.56489 5.62895 5.69607 5.74484 5.80834 5.82257 5.89792 5.95233 5.97355 6.01020 6.07372 6.13389 6.14485 6.26728 6.28962 6.32478 6.47720 6.57756 6.64681 6.90777 6.95459 6.97259 7.11831 7.19927 7.28104 7.46674 7.62335 7.88376 8.00045 8.18681 8.41265 8.69374 8.83916 8.92465 9.44853 10.20836 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015000 B = 0.003552 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.213278 B = 7881.567732 C = 8933.763204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.532 5.532 3 C 0.058 3.942 4 C -0.119 4.119 5 C -0.111 4.111 6 C -0.053 4.053 7 C -0.162 4.162 8 C -0.137 4.137 9 C 0.087 3.913 10 H 0.043 0.957 11 C 0.125 3.875 12 N -0.748 5.748 13 C 0.562 3.438 14 O -0.536 6.536 15 C -0.258 4.258 16 C -0.059 4.059 17 C -0.244 4.244 18 C -0.096 4.096 19 C -0.146 4.146 20 C 0.149 3.851 21 C -0.418 4.418 22 H 0.103 0.897 23 C 0.071 3.929 24 N -0.796 5.796 25 Si 0.916 3.084 26 H -0.268 1.268 27 H -0.279 1.279 28 H -0.260 1.260 29 H 0.026 0.974 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.030 0.970 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.085 0.915 39 H 0.056 0.944 40 H 0.050 0.950 41 H 0.067 0.933 42 H 0.046 0.954 43 H 0.060 0.940 44 H 0.078 0.922 45 H 0.058 0.942 46 H 0.394 0.606 47 H 0.088 0.912 48 H 0.090 0.910 49 H 0.091 0.909 50 H 0.114 0.886 51 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.631 16.634 -4.032 17.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.256 5.256 3 C -0.070 4.070 4 C -0.157 4.157 5 C -0.149 4.149 6 C -0.053 4.053 7 C -0.220 4.220 8 C -0.194 4.194 9 C -0.022 4.022 10 H 0.060 0.940 11 C 0.001 3.999 12 N -0.406 5.406 13 C 0.356 3.644 14 O -0.414 6.414 15 C -0.263 4.263 16 C -0.078 4.078 17 C -0.263 4.263 18 C -0.115 4.115 19 C -0.166 4.166 20 C 0.145 3.855 21 C -0.447 4.447 22 H 0.120 0.880 23 C -0.147 4.147 24 N -0.422 5.422 25 Si 0.741 3.259 26 H -0.193 1.193 27 H -0.204 1.204 28 H -0.184 1.184 29 H 0.044 0.956 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.048 0.952 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.103 0.897 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.065 0.935 43 H 0.079 0.921 44 H 0.096 0.904 45 H 0.076 0.924 46 H 0.231 0.769 47 H 0.106 0.894 48 H 0.109 0.891 49 H 0.109 0.891 50 H 0.132 0.868 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.456 15.746 -5.120 16.739 hybrid contribution -0.321 0.256 0.720 0.829 sum 2.136 16.002 -4.400 16.732 Atomic orbital electron populations 1.22470 0.87202 1.03083 1.00123 1.61806 1.07578 1.13147 1.43085 1.22090 0.95717 0.89026 1.00213 1.21642 0.94382 0.99812 0.99847 1.21686 0.99983 0.95053 0.98163 1.20523 0.92988 0.95038 0.96758 1.22345 1.00898 1.02372 0.96388 1.21872 1.00183 1.00699 0.96637 1.21836 0.94748 0.93992 0.91616 0.93960 1.21271 0.98967 0.90687 0.88997 1.46428 1.63323 1.11903 1.18989 1.18407 0.78239 0.80137 0.87605 1.90684 1.41530 1.65765 1.43399 1.19501 1.12365 0.98598 0.95808 1.20652 0.96590 0.96687 0.93851 1.20279 1.10471 0.96378 0.99170 1.20793 0.98151 0.94500 0.98007 1.21316 1.02127 0.99877 0.93238 1.17464 0.87584 0.89100 0.91347 1.20063 1.16291 0.92709 1.15601 0.87974 1.26065 0.95010 0.97781 0.95840 1.69707 1.24324 1.11777 1.36363 0.86174 0.81392 0.77926 0.80438 1.19336 1.20384 1.18379 0.95559 0.91542 0.90458 0.95165 0.90806 0.91832 0.90686 0.92433 0.91670 0.89667 0.92520 0.93095 0.91406 0.93474 0.92123 0.90410 0.92373 0.76859 0.89424 0.89128 0.89093 0.86800 0.90794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 8.87 60.07 0.53 0.73 16 2 N -0.53 -5.91 4.03 -234.93 -0.95 -6.86 16 3 C 0.06 0.53 5.46 -3.83 -0.02 0.51 16 4 C -0.12 -1.03 5.74 -26.65 -0.15 -1.19 16 5 C -0.11 -1.07 4.78 -26.61 -0.13 -1.19 16 6 C -0.05 -0.61 0.54 -154.43 -0.08 -0.69 16 7 C -0.16 -2.01 6.86 37.16 0.25 -1.75 16 8 C -0.14 -1.68 7.68 37.16 0.29 -1.39 16 9 C 0.09 1.07 1.31 -67.72 -0.09 0.98 16 10 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 11 C 0.13 1.95 4.65 -4.04 -0.02 1.93 16 12 N -0.75 -13.20 3.45 -61.38 -0.21 -13.41 16 13 C 0.56 12.95 7.72 -12.52 -0.10 12.85 16 14 O -0.54 -14.11 13.61 5.28 0.07 -14.04 16 15 C -0.26 -6.26 5.92 -104.37 -0.62 -6.88 16 16 C -0.06 -1.25 9.52 -39.22 -0.37 -1.62 16 17 C -0.24 -5.13 10.03 -39.37 -0.39 -5.53 16 18 C -0.10 -2.15 10.01 -39.60 -0.40 -2.54 16 19 C -0.15 -3.71 8.62 -38.88 -0.34 -4.04 16 20 C 0.15 3.99 5.47 -106.54 -0.58 3.41 16 21 C -0.42 -11.54 7.57 -37.82 -0.29 -11.83 16 22 H 0.10 2.92 6.06 -52.49 -0.32 2.60 16 23 C 0.07 1.84 5.25 -17.30 -0.09 1.75 16 24 N -0.80 -20.86 11.34 55.56 0.63 -20.23 16 25 Si 0.92 19.92 29.57 -169.99 -5.03 14.89 16 26 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 27 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 28 H -0.26 -5.63 7.11 56.52 0.40 -5.22 16 29 H 0.03 0.27 8.10 -51.93 -0.42 -0.15 16 30 H 0.07 0.58 7.95 -51.93 -0.41 0.17 16 31 H 0.08 0.89 6.52 -51.93 -0.34 0.55 16 32 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.60 7.99 -51.93 -0.42 0.19 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.69 6.58 -51.93 -0.34 0.35 16 36 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 1.29 5.82 -51.93 -0.30 0.99 16 39 H 0.06 0.65 8.13 -51.93 -0.42 0.22 16 40 H 0.05 0.58 7.36 -51.93 -0.38 0.20 16 41 H 0.07 0.81 6.01 -51.93 -0.31 0.50 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.88 6.24 -51.93 -0.32 0.55 16 44 H 0.08 1.35 5.97 -51.92 -0.31 1.04 16 45 H 0.06 0.94 6.02 -51.93 -0.31 0.63 16 46 H 0.39 6.16 3.84 -40.82 -0.16 6.00 16 47 H 0.09 1.54 6.43 -52.48 -0.34 1.20 16 48 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 49 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 50 H 0.11 2.95 6.81 -52.49 -0.36 2.59 16 51 H 0.28 6.72 8.29 -40.82 -0.34 6.38 16 LS Contribution 378.38 15.07 5.70 5.70 Total: -1.00 -29.15 378.38 -10.35 -39.50 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -7.98 Total: 10.93 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -2.59 Total: -16.49 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: -0.53 Total: -40.50 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: 0.07 Total: -14.04 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.03 Total: 14.89 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.15 -10.35 -39.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601542063.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.831 kcal (2) G-P(sol) polarization free energy of solvation -29.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds