Wall clock time and date at job start Tue Mar 31 2020 16:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46840 * 110.99139 * 2 1 4 4 C 1.53044 * 109.51114 * 185.85033 * 3 2 1 5 5 C 1.53114 * 109.27863 * 300.81542 * 4 3 2 6 6 C 1.53118 * 109.16210 * 57.65397 * 5 4 3 7 7 C 1.52998 * 109.50420 * 182.40119 * 6 5 4 8 8 C 1.53001 * 109.50103 * 62.28747 * 6 5 4 9 9 C 1.46849 * 110.99787 * 124.20610 * 2 1 3 10 10 H 1.08998 * 109.46236 * 294.16339 * 9 2 1 11 11 C 1.52995 * 109.46214 * 54.14366 * 9 2 1 12 12 N 1.46505 * 109.47005 * 188.50228 * 11 9 2 13 13 C 1.34781 * 119.99850 * 186.50253 * 12 11 9 14 14 O 1.21602 * 120.00024 * 359.97438 * 13 12 11 15 15 C 1.47428 * 119.99767 * 180.02562 * 13 12 11 16 16 C 1.39227 * 120.28295 * 355.06437 * 15 13 12 17 17 C 1.38224 * 120.09541 * 179.97438 * 16 15 13 18 18 C 1.38828 * 120.67115 * 0.02562 * 17 16 15 19 19 C 1.37596 * 120.57361 * 0.02562 * 18 17 16 20 20 C 1.40709 * 119.88158 * 359.97119 * 19 18 17 21 21 C 1.40886 * 120.32852 * 180.02562 * 20 19 18 22 22 H 1.08000 * 119.99563 * 143.06901 * 21 20 19 23 23 C 1.40274 * 120.00076 * 323.07305 * 21 20 19 24 24 N 1.30628 * 120.00136 * 350.98292 * 23 21 20 25 25 Si 1.86800 * 120.00083 * 170.98215 * 23 21 20 26 26 H 1.48493 * 109.47346 * 89.99789 * 25 23 21 27 27 H 1.48496 * 109.47319 * 210.00193 * 25 23 21 28 28 H 1.48502 * 109.46802 * 329.99918 * 25 23 21 29 29 H 1.08996 * 109.46481 * 287.88783 * 1 2 3 30 30 H 1.09001 * 109.46573 * 47.88589 * 1 2 3 31 31 H 1.08994 * 109.47486 * 167.88759 * 1 2 3 32 32 H 1.08996 * 109.47229 * 65.83667 * 3 2 1 33 33 H 1.08995 * 109.46636 * 305.85599 * 3 2 1 34 34 H 1.09003 * 109.49965 * 180.87628 * 4 3 2 35 35 H 1.09002 * 109.53426 * 60.77933 * 4 3 2 36 36 H 1.09007 * 109.52413 * 297.74912 * 5 4 3 37 37 H 1.09007 * 109.52477 * 177.56117 * 5 4 3 38 38 H 1.09004 * 109.46995 * 188.00747 * 7 6 5 39 39 H 1.08992 * 109.47377 * 308.01433 * 7 6 5 40 40 H 1.09000 * 109.46931 * 68.01907 * 7 6 5 41 41 H 1.09006 * 109.47370 * 300.19647 * 8 6 5 42 42 H 1.08999 * 109.47345 * 60.19865 * 8 6 5 43 43 H 1.08997 * 109.47284 * 180.20087 * 8 6 5 44 44 H 1.09007 * 109.47622 * 68.50283 * 11 9 2 45 45 H 1.09000 * 109.47107 * 308.50329 * 11 9 2 46 46 H 0.96992 * 120.00067 * 6.50796 * 12 11 9 47 47 H 1.08007 * 119.95545 * 359.97438 * 16 15 13 48 48 H 1.07994 * 119.66610 * 179.97438 * 17 16 15 49 49 H 1.07997 * 119.71057 * 179.71710 * 18 17 16 50 50 H 1.08001 * 120.05977 * 179.97438 * 19 18 17 51 51 H 0.97000 * 120.00322 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9951 1.3709 0.0000 4 6 3.5180 1.3341 -0.1470 5 6 4.1188 0.5369 1.0140 6 6 3.5181 -0.8715 1.0206 7 6 4.0683 -1.6558 2.2135 8 6 3.8874 -1.5904 -0.2785 9 6 1.9953 -0.7707 1.1338 10 1 1.7327 -0.2706 2.0660 11 6 1.3891 -2.1754 1.1205 12 7 1.7515 -2.8754 2.3555 13 6 1.4385 -4.1773 2.5088 14 8 0.8549 -4.7708 1.6224 15 6 1.8027 -4.8815 3.7518 16 6 2.5590 -4.2379 4.7276 17 6 2.8979 -4.9016 5.8917 18 6 2.4919 -6.2122 6.1035 19 6 1.7446 -6.8750 5.1572 20 6 1.3862 -6.2219 3.9635 21 6 0.6208 -6.8914 2.9884 22 1 -0.1272 -6.3527 2.4256 23 6 0.8301 -8.2575 2.7487 24 7 1.8461 -8.8687 3.2969 25 14 -0.3442 -9.2029 1.6456 26 1 0.1346 -9.1373 0.2415 27 1 -0.4014 -10.6207 2.0833 28 1 -1.6993 -8.6021 1.7351 29 1 -0.3632 0.3157 0.9780 30 1 -0.3632 0.6892 -0.7624 31 1 -0.3634 -1.0047 -0.2156 32 1 1.7325 1.8609 0.9376 33 1 1.5632 1.9257 -0.8329 34 1 3.9098 2.3512 -0.1314 35 1 3.7816 0.8571 -1.0910 36 1 3.8889 1.0355 1.9557 37 1 5.1998 0.4713 0.8899 38 1 3.7543 -2.6971 2.1397 39 1 5.1569 -1.6035 2.2118 40 1 3.6852 -1.2257 3.1389 41 1 3.4965 -1.0299 -1.1278 42 1 4.9720 -1.6619 -0.3586 43 1 3.4565 -2.5916 -0.2748 44 1 1.7728 -2.7287 0.2633 45 1 0.3039 -2.1021 1.0495 46 1 2.2167 -2.4018 3.0627 47 1 2.8815 -3.2184 4.5747 48 1 3.4851 -4.3959 6.6438 49 1 2.7693 -6.7176 7.0167 50 1 1.4335 -7.8946 5.3304 51 1 1.9906 -9.8135 3.1314 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601542063.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:10 Heat of formation + Delta-G solvation = -24.681658 kcal Electronic energy + Delta-G solvation = -29758.124705 eV Core-core repulsion = 26042.315751 eV Total energy + Delta-G solvation = -3715.808954 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.58507 -40.31379 -38.52782 -36.30865 -35.73932 -35.36032 -33.02076 -31.79039 -31.32841 -29.14207 -28.23195 -27.50873 -27.34156 -26.15340 -23.85524 -22.85139 -22.38129 -22.20736 -21.09325 -19.54821 -19.16059 -17.98986 -17.22094 -16.92662 -16.87630 -16.46731 -15.95324 -15.89737 -15.64639 -15.42468 -14.97960 -14.91791 -14.68013 -14.48786 -14.23163 -13.95061 -13.88213 -13.52770 -13.37503 -13.24104 -13.13203 -12.88883 -12.87347 -12.79921 -12.68864 -12.49673 -12.31676 -12.29827 -12.13498 -11.92026 -11.83450 -11.47812 -11.34907 -11.13754 -11.11440 -11.00061 -10.27732 -9.78538 -9.37757 -9.27468 -9.19290 -8.66142 -6.34871 0.52445 1.01468 1.32724 1.45851 1.48654 2.21522 2.33334 2.36907 2.80389 3.08237 3.58088 3.66051 3.72376 3.89232 4.13082 4.15649 4.23329 4.32315 4.36777 4.39891 4.43487 4.51874 4.56868 4.58874 4.64478 4.73133 4.77544 4.81817 4.90077 4.95855 4.97641 4.99709 5.03814 5.08692 5.10713 5.16390 5.20417 5.24438 5.32102 5.34685 5.38784 5.47943 5.61001 5.62874 5.64681 5.81941 6.04357 6.08568 6.10978 6.15979 6.34784 6.64161 6.81255 6.92021 7.01596 7.67848 8.32862 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015000 B = 0.003552 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.213278 B = 7881.567732 C = 8933.763204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.541 5.541 3 C 0.056 3.944 4 C -0.117 4.117 5 C -0.106 4.106 6 C -0.051 4.051 7 C -0.163 4.163 8 C -0.131 4.131 9 C 0.098 3.902 10 H 0.048 0.952 11 C 0.128 3.872 12 N -0.723 5.723 13 C 0.557 3.443 14 O -0.579 6.579 15 C -0.275 4.275 16 C -0.055 4.055 17 C -0.232 4.232 18 C -0.091 4.091 19 C -0.175 4.175 20 C 0.119 3.881 21 C -0.460 4.460 22 H 0.077 0.923 23 C 0.033 3.967 24 N -0.827 5.827 25 Si 0.976 3.024 26 H -0.273 1.273 27 H -0.256 1.256 28 H -0.264 1.264 29 H 0.027 0.973 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.035 0.965 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.052 0.948 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.055 0.945 43 H 0.028 0.972 44 H 0.056 0.944 45 H 0.050 0.950 46 H 0.406 0.594 47 H 0.129 0.871 48 H 0.134 0.866 49 H 0.121 0.879 50 H 0.096 0.904 51 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.146 19.758 -3.094 20.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.266 5.266 3 C -0.071 4.071 4 C -0.154 4.154 5 C -0.144 4.144 6 C -0.052 4.052 7 C -0.220 4.220 8 C -0.189 4.189 9 C -0.011 4.011 10 H 0.066 0.934 11 C 0.004 3.996 12 N -0.381 5.381 13 C 0.350 3.650 14 O -0.460 6.460 15 C -0.280 4.280 16 C -0.074 4.074 17 C -0.251 4.251 18 C -0.110 4.110 19 C -0.194 4.194 20 C 0.115 3.885 21 C -0.489 4.489 22 H 0.095 0.905 23 C -0.181 4.181 24 N -0.454 5.454 25 Si 0.798 3.202 26 H -0.198 1.198 27 H -0.180 1.180 28 H -0.188 1.188 29 H 0.046 0.954 30 H 0.105 0.895 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.074 0.926 43 H 0.047 0.953 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.246 0.754 47 H 0.146 0.854 48 H 0.152 0.848 49 H 0.139 0.861 50 H 0.115 0.885 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.995 18.920 -4.154 19.779 hybrid contribution -0.691 -0.514 0.497 0.995 sum 3.304 18.406 -3.657 19.055 Atomic orbital electron populations 1.22461 0.86983 1.02513 1.00878 1.61802 1.07925 1.14554 1.42345 1.22197 0.96189 0.87627 1.01094 1.21648 0.93847 1.00851 0.99069 1.21653 1.00402 0.93286 0.99053 1.20525 0.92341 0.96490 0.95828 1.22309 1.01851 1.00458 0.97415 1.21810 1.00500 0.99039 0.97510 1.21683 0.95187 0.91695 0.92525 0.93370 1.21327 0.98697 0.92475 0.87137 1.46146 1.61785 1.10204 1.19918 1.18456 0.77955 0.81578 0.86970 1.90659 1.43543 1.67205 1.44627 1.19866 1.12700 0.98296 0.97164 1.21042 0.95018 0.98402 0.92915 1.20810 1.09000 0.95659 0.99603 1.21181 0.96432 0.95237 0.98134 1.21259 1.04408 0.99714 0.94048 1.17830 0.88254 0.90615 0.91797 1.20008 1.17755 0.93983 1.17148 0.90474 1.26712 0.96307 0.98051 0.97009 1.69729 1.25410 1.12322 1.37904 0.85300 0.79035 0.77613 0.78276 1.19798 1.18006 1.18772 0.95404 0.89548 0.92367 0.94631 0.89403 0.89630 0.91295 0.91557 0.90752 0.92918 0.91279 0.91643 0.91090 0.92582 0.95291 0.92539 0.93173 0.75360 0.85373 0.84788 0.86101 0.88549 0.90134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 8.87 127.69 1.13 1.52 16 2 N -0.54 -11.16 4.03 -897.19 -3.62 -14.78 16 3 C 0.06 0.86 5.46 86.33 0.47 1.33 16 4 C -0.12 -1.61 5.74 30.65 0.18 -1.43 16 5 C -0.11 -1.66 4.78 30.67 0.15 -1.52 16 6 C -0.05 -1.09 0.54 -52.13 -0.03 -1.11 16 7 C -0.16 -3.66 6.86 71.98 0.49 -3.17 16 8 C -0.13 -3.15 7.68 71.98 0.55 -2.60 16 9 C 0.10 2.28 1.31 44.94 0.06 2.34 16 10 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 11 C 0.13 4.07 4.65 86.38 0.40 4.47 16 12 N -0.72 -25.66 3.45 -466.35 -1.61 -27.27 16 13 C 0.56 26.63 7.72 86.66 0.67 27.30 16 14 O -0.58 -32.55 13.61 -4.04 -0.05 -32.60 16 15 C -0.28 -13.61 5.92 -19.70 -0.12 -13.73 16 16 C -0.06 -2.21 9.52 22.50 0.21 -2.00 16 17 C -0.23 -8.97 10.03 22.41 0.22 -8.75 16 18 C -0.09 -3.95 10.01 22.26 0.22 -3.73 16 19 C -0.17 -9.09 8.62 22.72 0.20 -8.90 16 20 C 0.12 6.64 5.47 -21.11 -0.12 6.52 16 21 C -0.46 -27.08 7.57 23.41 0.18 -26.90 16 22 H 0.08 4.79 6.06 -2.91 -0.02 4.78 16 23 C 0.03 1.83 5.25 85.37 0.45 2.27 16 24 N -0.83 -45.28 11.34 21.88 0.25 -45.04 16 25 Si 0.98 42.94 29.57 68.60 2.03 44.97 16 26 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 27 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 28 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 29 H 0.03 0.54 8.10 -2.39 -0.02 0.52 16 30 H 0.09 1.35 7.95 -2.39 -0.02 1.33 16 31 H 0.06 1.36 6.52 -2.39 -0.02 1.35 16 32 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.09 1.13 7.99 -2.39 -0.02 1.11 16 34 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.07 1.06 6.58 -2.39 -0.02 1.05 16 36 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.07 1.06 8.14 -2.38 -0.02 1.05 16 38 H 0.05 1.54 5.82 -2.38 -0.01 1.53 16 39 H 0.07 1.39 8.13 -2.39 -0.02 1.37 16 40 H 0.06 1.26 7.36 -2.39 -0.02 1.25 16 41 H 0.07 1.63 6.01 -2.38 -0.01 1.62 16 42 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.03 0.86 6.24 -2.39 -0.01 0.85 16 44 H 0.06 2.08 5.97 -2.38 -0.01 2.06 16 45 H 0.05 1.69 6.02 -2.39 -0.01 1.67 16 46 H 0.41 12.09 3.84 -92.71 -0.36 11.73 16 47 H 0.13 4.00 6.43 -2.91 -0.02 3.99 16 48 H 0.13 4.10 8.06 -2.91 -0.02 4.07 16 49 H 0.12 4.44 8.06 -2.91 -0.02 4.41 16 50 H 0.10 5.24 6.81 -2.91 -0.02 5.22 16 51 H 0.29 14.27 8.29 -92.71 -0.77 13.50 16 Total: -1.00 -68.39 378.38 2.90 -65.49 By element: Atomic # 1 Polarization: 36.72 SS G_CDS: 0.58 Total: 37.30 kcal Atomic # 6 Polarization: -33.41 SS G_CDS: 5.32 Total: -28.08 kcal Atomic # 7 Polarization: -82.10 SS G_CDS: -4.98 Total: -87.08 kcal Atomic # 8 Polarization: -32.55 SS G_CDS: -0.05 Total: -32.60 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -68.39 2.90 -65.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601542063.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.809 kcal (2) G-P(sol) polarization free energy of solvation -68.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds