Wall clock time and date at job start Tue Mar 31 2020 16:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46911 * 1 3 3 C 1.46843 * 110.98902 * 2 1 4 4 C 1.53040 * 109.51131 * 174.15122 * 3 2 1 5 5 C 1.53118 * 109.27905 * 59.18665 * 4 3 2 6 6 C 1.53115 * 109.16094 * 302.34578 * 5 4 3 7 7 C 1.53008 * 109.50441 * 297.71399 * 6 5 4 8 8 C 1.53002 * 109.53963 * 177.61440 * 6 5 4 9 9 C 1.46847 * 110.99808 * 235.79973 * 2 1 3 10 10 H 1.08996 * 109.46605 * 65.83273 * 9 2 1 11 11 C 1.53006 * 109.46389 * 305.85507 * 9 2 1 12 12 N 1.46499 * 109.46996 * 171.94495 * 11 9 2 13 13 C 1.34783 * 119.99657 * 176.01629 * 12 11 9 14 14 O 1.21608 * 120.00080 * 359.97438 * 13 12 11 15 15 C 1.47429 * 119.99701 * 179.97438 * 13 12 11 16 16 C 1.39222 * 120.28310 * 355.01382 * 15 13 12 17 17 C 1.38225 * 120.08856 * 179.97438 * 16 15 13 18 18 C 1.38822 * 120.67659 * 0.02562 * 17 16 15 19 19 C 1.37594 * 120.57421 * 359.97438 * 18 17 16 20 20 C 1.40704 * 119.87834 * 0.02562 * 19 18 17 21 21 C 1.40896 * 120.32766 * 179.97438 * 20 19 18 22 22 H 1.07996 * 120.00095 * 142.54624 * 21 20 19 23 23 C 1.40266 * 120.00046 * 322.54638 * 21 20 19 24 24 N 1.30630 * 120.00251 * 358.48489 * 23 21 20 25 25 Si 1.86803 * 120.00355 * 178.48027 * 23 21 20 26 26 H 1.48504 * 109.46898 * 89.99776 * 25 23 21 27 27 H 1.48493 * 109.47645 * 210.00500 * 25 23 21 28 28 H 1.48504 * 109.46969 * 330.00402 * 25 23 21 29 29 H 1.08995 * 109.46963 * 191.29815 * 1 2 3 30 30 H 1.08990 * 109.46843 * 311.30236 * 1 2 3 31 31 H 1.09006 * 109.46607 * 71.30389 * 1 2 3 32 32 H 1.08993 * 109.46406 * 54.14384 * 3 2 1 33 33 H 1.09004 * 109.47481 * 294.16305 * 3 2 1 34 34 H 1.09002 * 109.50625 * 299.24101 * 4 3 2 35 35 H 1.09003 * 109.50404 * 179.12466 * 4 3 2 36 36 H 1.09006 * 109.52441 * 182.44036 * 5 4 3 37 37 H 1.08998 * 109.52526 * 62.25065 * 5 4 3 38 38 H 1.08992 * 109.46901 * 179.80116 * 7 6 5 39 39 H 1.08999 * 109.46793 * 299.80046 * 7 6 5 40 40 H 1.08995 * 109.47087 * 59.80098 * 7 6 5 41 41 H 1.08998 * 109.47147 * 291.35758 * 8 6 5 42 42 H 1.08999 * 109.46872 * 51.35433 * 8 6 5 43 43 H 1.09000 * 109.47418 * 171.35569 * 8 6 5 44 44 H 1.08998 * 109.46942 * 51.94540 * 11 9 2 45 45 H 1.09000 * 109.46886 * 291.94981 * 11 9 2 46 46 H 0.97001 * 120.00299 * 356.01321 * 12 11 9 47 47 H 1.07994 * 119.95531 * 359.95421 * 16 15 13 48 48 H 1.07998 * 119.66045 * 179.97438 * 17 16 15 49 49 H 1.08006 * 119.71394 * 179.69819 * 18 17 16 50 50 H 1.07994 * 120.06139 * 179.97438 * 19 18 17 51 51 H 0.97000 * 120.00225 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9951 1.3710 0.0000 4 6 3.5180 1.3342 0.1470 5 6 4.1188 0.5371 -1.0141 6 6 3.5182 -0.8713 -1.0208 7 6 3.8874 -1.5903 0.2784 8 6 4.0681 -1.6565 -2.2132 9 6 1.9953 -0.7706 -1.1339 10 1 1.7327 -0.2705 -2.0660 11 6 1.3891 -2.1754 -1.1208 12 7 1.7605 -2.8789 -2.3509 13 6 1.4043 -4.1673 -2.5241 14 8 0.7751 -4.7457 -1.6590 15 6 1.7775 -4.8751 -3.7623 16 6 2.4063 -4.1916 -4.7995 17 6 2.7549 -4.8594 -5.9584 18 6 2.4843 -6.2131 -6.1045 19 6 1.8639 -6.9156 -5.0971 20 6 1.4987 -6.2594 -3.9072 21 6 0.8626 -6.9694 -2.8697 22 1 1.0986 -6.7472 -1.8395 23 6 -0.0774 -7.9649 -3.1748 24 7 -0.3849 -8.2134 -4.4198 25 14 -0.8894 -8.9354 -1.8007 26 1 -2.1313 -8.2428 -1.3725 27 1 -1.2251 -10.2974 -2.2880 28 1 0.0426 -9.0375 -0.6491 29 1 -0.3633 -1.0077 0.2013 30 1 -0.3633 0.6782 0.7720 31 1 -0.3633 0.3294 -0.9735 32 1 1.5632 1.9257 0.8329 33 1 1.7325 1.8610 -0.9376 34 1 3.7811 0.8568 1.0909 35 1 3.9098 2.3513 0.1314 36 1 5.1998 0.4715 -0.8901 37 1 3.8889 1.0356 -1.9557 38 1 3.4566 -2.5915 0.2745 39 1 4.9721 -1.6618 0.3584 40 1 3.4966 -1.0299 1.1275 41 1 3.6765 -1.2337 -3.1384 42 1 5.1564 -1.5951 -2.2179 43 1 3.7634 -2.6999 -2.1330 44 1 0.3034 -2.1020 -1.0578 45 1 1.7667 -2.7259 -0.2591 46 1 2.2626 -2.4176 -3.0408 47 1 2.6217 -3.1382 -4.6985 48 1 3.2420 -4.3223 -6.7588 49 1 2.7591 -6.7184 -7.0187 50 1 1.6570 -7.9684 -5.2197 51 1 -1.0346 -8.9020 -4.6308 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601542065.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:14 Heat of formation + Delta-G solvation = -7.093919 kcal Electronic energy + Delta-G solvation = -29739.762047 eV Core-core repulsion = 26024.715755 eV Total energy + Delta-G solvation = -3715.046292 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.49767 -38.68045 -36.75576 -35.22350 -34.41268 -33.59904 -31.82821 -30.00218 -29.56409 -27.99300 -27.21551 -26.71331 -25.65476 -24.83971 -22.24808 -21.54716 -21.40502 -20.69043 -19.41687 -18.42849 -17.45505 -16.36324 -15.79883 -15.70760 -15.56255 -15.16662 -14.82783 -14.35993 -14.26970 -14.08488 -13.66882 -13.49464 -13.28102 -13.11374 -12.96779 -12.68608 -12.52058 -12.40334 -12.13086 -12.02696 -11.80237 -11.76178 -11.53045 -11.41672 -11.27717 -11.09069 -11.04764 -10.90905 -10.66638 -10.50926 -10.49518 -10.24592 -10.04853 -10.02688 -9.65995 -9.26353 -8.46243 -8.37062 -8.17685 -7.57454 -7.29340 -6.72186 -4.36135 2.37070 2.83410 3.13372 3.21492 3.26327 3.55974 4.02662 4.19992 4.23323 4.53269 4.61379 4.70460 4.74083 4.89371 5.10738 5.13451 5.28430 5.31812 5.37788 5.40829 5.49737 5.55896 5.62716 5.68309 5.72916 5.79632 5.81144 5.88281 5.94523 5.96309 6.00260 6.07335 6.11361 6.12792 6.25493 6.27941 6.31784 6.44536 6.55818 6.64422 6.90351 6.96810 6.97946 7.12005 7.20001 7.29416 7.48114 7.62377 7.90542 8.01551 8.19249 8.41402 8.70669 8.84868 8.92923 9.44124 10.22463 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015128 B = 0.003554 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.474634 B = 7877.512224 C = 9038.061808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.531 5.531 3 C 0.057 3.943 4 C -0.119 4.119 5 C -0.111 4.111 6 C -0.053 4.053 7 C -0.137 4.137 8 C -0.163 4.163 9 C 0.086 3.914 10 H 0.043 0.957 11 C 0.125 3.875 12 N -0.749 5.749 13 C 0.562 3.438 14 O -0.536 6.536 15 C -0.256 4.256 16 C -0.061 4.061 17 C -0.241 4.241 18 C -0.098 4.098 19 C -0.144 4.144 20 C 0.146 3.854 21 C -0.416 4.416 22 H 0.101 0.899 23 C 0.068 3.932 24 N -0.802 5.802 25 Si 0.920 3.080 26 H -0.269 1.269 27 H -0.279 1.279 28 H -0.260 1.260 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.026 0.974 32 H 0.074 0.926 33 H 0.030 0.970 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.046 0.954 40 H 0.067 0.933 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.085 0.915 44 H 0.059 0.941 45 H 0.076 0.924 46 H 0.394 0.606 47 H 0.087 0.913 48 H 0.090 0.910 49 H 0.091 0.909 50 H 0.121 0.879 51 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.822 15.774 5.652 17.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.256 5.256 3 C -0.071 4.071 4 C -0.157 4.157 5 C -0.149 4.149 6 C -0.053 4.053 7 C -0.194 4.194 8 C -0.220 4.220 9 C -0.022 4.022 10 H 0.061 0.939 11 C 0.001 3.999 12 N -0.408 5.408 13 C 0.356 3.644 14 O -0.414 6.414 15 C -0.261 4.261 16 C -0.080 4.080 17 C -0.261 4.261 18 C -0.116 4.116 19 C -0.163 4.163 20 C 0.142 3.858 21 C -0.445 4.445 22 H 0.119 0.881 23 C -0.149 4.149 24 N -0.428 5.428 25 Si 0.745 3.255 26 H -0.194 1.194 27 H -0.205 1.205 28 H -0.184 1.184 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.092 0.908 33 H 0.048 0.952 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.103 0.897 44 H 0.077 0.923 45 H 0.094 0.906 46 H 0.233 0.767 47 H 0.105 0.895 48 H 0.109 0.891 49 H 0.109 0.891 50 H 0.139 0.861 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.344 14.976 6.591 17.212 hybrid contribution -0.612 0.413 -0.826 1.108 sum 4.733 15.388 5.764 17.100 Atomic orbital electron populations 1.22476 0.87173 1.03119 1.00155 1.61812 1.07601 1.13141 1.43037 1.22092 0.95711 0.89041 1.00236 1.21642 0.94386 0.99819 0.99826 1.21683 0.99968 0.95042 0.98192 1.20528 0.93007 0.95063 0.96740 1.21870 1.00156 1.00677 0.96661 1.22347 1.00903 1.02337 0.96450 1.21837 0.94718 0.94013 0.91665 0.93950 1.21265 0.99038 0.90595 0.89000 1.46496 1.60571 1.13422 1.20294 1.18423 0.78577 0.80061 0.87384 1.90687 1.39994 1.66263 1.44424 1.19530 1.16334 0.94709 0.95503 1.20633 0.97052 0.96544 0.93774 1.20297 1.11956 0.95369 0.98461 1.20825 0.98967 0.94246 0.97612 1.21450 1.00221 1.00005 0.94665 1.17499 0.87199 0.88901 0.92209 1.20055 1.16722 1.11765 0.95941 0.88106 1.26072 0.96762 0.95562 0.96481 1.69694 1.26860 1.27074 1.19149 0.86107 0.80081 0.77995 0.81311 1.19404 1.20480 1.18374 0.90422 0.91512 0.95561 0.90795 0.95158 0.90684 0.91820 0.91660 0.92423 0.92146 0.93470 0.91392 0.93039 0.92469 0.89665 0.92275 0.90554 0.76720 0.89492 0.89139 0.89079 0.86131 0.90871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 8.89 60.07 0.53 0.73 16 2 N -0.53 -5.91 4.03 -234.92 -0.95 -6.85 16 3 C 0.06 0.53 5.46 -3.83 -0.02 0.51 16 4 C -0.12 -1.02 5.74 -26.65 -0.15 -1.17 16 5 C -0.11 -1.05 4.78 -26.61 -0.13 -1.17 16 6 C -0.05 -0.60 0.55 -154.42 -0.08 -0.68 16 7 C -0.14 -1.61 7.67 37.16 0.29 -1.33 16 8 C -0.16 -1.95 6.83 37.16 0.25 -1.69 16 9 C 0.09 1.06 1.32 -67.72 -0.09 0.97 16 10 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 11 C 0.13 1.96 4.62 -4.04 -0.02 1.94 16 12 N -0.75 -13.22 3.56 -61.38 -0.22 -13.44 16 13 C 0.56 12.93 7.72 -12.51 -0.10 12.84 16 14 O -0.54 -14.09 13.64 5.27 0.07 -14.02 16 15 C -0.26 -6.21 5.92 -104.37 -0.62 -6.83 16 16 C -0.06 -1.29 9.52 -39.22 -0.37 -1.67 16 17 C -0.24 -5.09 10.03 -39.37 -0.39 -5.49 16 18 C -0.10 -2.19 10.01 -39.60 -0.40 -2.59 16 19 C -0.14 -3.66 8.61 -38.89 -0.33 -4.00 16 20 C 0.15 3.91 5.50 -106.54 -0.59 3.33 16 21 C -0.42 -11.50 7.56 -37.81 -0.29 -11.78 16 22 H 0.10 2.88 6.08 -52.49 -0.32 2.56 16 23 C 0.07 1.77 5.36 -17.30 -0.09 1.68 16 24 N -0.80 -20.99 11.01 55.56 0.61 -20.38 16 25 Si 0.92 20.13 29.56 -169.99 -5.03 15.11 16 26 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 27 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 28 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 29 H 0.08 0.91 6.48 -51.93 -0.34 0.57 16 30 H 0.07 0.59 7.96 -51.93 -0.41 0.18 16 31 H 0.03 0.28 8.11 -51.93 -0.42 -0.14 16 32 H 0.07 0.60 8.00 -51.93 -0.42 0.19 16 33 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.67 6.58 -51.93 -0.34 0.33 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.84 6.25 -51.93 -0.32 0.51 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.79 6.01 -51.93 -0.31 0.47 16 41 H 0.05 0.58 7.31 -51.93 -0.38 0.20 16 42 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 43 H 0.08 1.24 5.82 -51.93 -0.30 0.94 16 44 H 0.06 0.98 6.03 -51.93 -0.31 0.66 16 45 H 0.08 1.30 6.02 -51.93 -0.31 0.98 16 46 H 0.39 6.17 3.60 -40.82 -0.15 6.02 16 47 H 0.09 1.53 6.43 -52.49 -0.34 1.19 16 48 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 49 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 50 H 0.12 3.14 6.58 -52.49 -0.35 2.80 16 51 H 0.28 6.71 8.29 -40.82 -0.34 6.37 16 LS Contribution 377.85 15.07 5.69 5.69 Total: -1.00 -29.14 377.85 -10.37 -39.51 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -7.96 Total: 10.79 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -2.60 Total: -16.40 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: -0.55 Total: -40.67 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: 0.07 Total: -14.02 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.03 Total: 15.11 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.14 -10.37 -39.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601542065.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.416 kcal (2) G-P(sol) polarization free energy of solvation -29.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds