Wall clock time and date at job start Tue Mar 31 2020 16:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46911 * 1 3 3 C 1.46843 * 110.98902 * 2 1 4 4 C 1.53040 * 109.51131 * 174.15122 * 3 2 1 5 5 C 1.53118 * 109.27905 * 59.18665 * 4 3 2 6 6 C 1.53115 * 109.16094 * 302.34578 * 5 4 3 7 7 C 1.53008 * 109.50441 * 297.71399 * 6 5 4 8 8 C 1.53002 * 109.53963 * 177.61440 * 6 5 4 9 9 C 1.46847 * 110.99808 * 235.79973 * 2 1 3 10 10 H 1.08996 * 109.46605 * 65.83273 * 9 2 1 11 11 C 1.53006 * 109.46389 * 305.85507 * 9 2 1 12 12 N 1.46499 * 109.46996 * 171.94495 * 11 9 2 13 13 C 1.34783 * 119.99657 * 176.01629 * 12 11 9 14 14 O 1.21608 * 120.00080 * 359.97438 * 13 12 11 15 15 C 1.47429 * 119.99701 * 179.97438 * 13 12 11 16 16 C 1.39222 * 120.28310 * 355.01382 * 15 13 12 17 17 C 1.38225 * 120.08856 * 179.97438 * 16 15 13 18 18 C 1.38822 * 120.67659 * 0.02562 * 17 16 15 19 19 C 1.37594 * 120.57421 * 359.97438 * 18 17 16 20 20 C 1.40704 * 119.87834 * 0.02562 * 19 18 17 21 21 C 1.40896 * 120.32766 * 179.97438 * 20 19 18 22 22 H 1.07996 * 120.00095 * 142.54624 * 21 20 19 23 23 C 1.40266 * 120.00046 * 322.54638 * 21 20 19 24 24 N 1.30630 * 120.00251 * 358.48489 * 23 21 20 25 25 Si 1.86803 * 120.00355 * 178.48027 * 23 21 20 26 26 H 1.48504 * 109.46898 * 89.99776 * 25 23 21 27 27 H 1.48493 * 109.47645 * 210.00500 * 25 23 21 28 28 H 1.48504 * 109.46969 * 330.00402 * 25 23 21 29 29 H 1.08995 * 109.46963 * 191.29815 * 1 2 3 30 30 H 1.08990 * 109.46843 * 311.30236 * 1 2 3 31 31 H 1.09006 * 109.46607 * 71.30389 * 1 2 3 32 32 H 1.08993 * 109.46406 * 54.14384 * 3 2 1 33 33 H 1.09004 * 109.47481 * 294.16305 * 3 2 1 34 34 H 1.09002 * 109.50625 * 299.24101 * 4 3 2 35 35 H 1.09003 * 109.50404 * 179.12466 * 4 3 2 36 36 H 1.09006 * 109.52441 * 182.44036 * 5 4 3 37 37 H 1.08998 * 109.52526 * 62.25065 * 5 4 3 38 38 H 1.08992 * 109.46901 * 179.80116 * 7 6 5 39 39 H 1.08999 * 109.46793 * 299.80046 * 7 6 5 40 40 H 1.08995 * 109.47087 * 59.80098 * 7 6 5 41 41 H 1.08998 * 109.47147 * 291.35758 * 8 6 5 42 42 H 1.08999 * 109.46872 * 51.35433 * 8 6 5 43 43 H 1.09000 * 109.47418 * 171.35569 * 8 6 5 44 44 H 1.08998 * 109.46942 * 51.94540 * 11 9 2 45 45 H 1.09000 * 109.46886 * 291.94981 * 11 9 2 46 46 H 0.97001 * 120.00299 * 356.01321 * 12 11 9 47 47 H 1.07994 * 119.95531 * 359.95421 * 16 15 13 48 48 H 1.07998 * 119.66045 * 179.97438 * 17 16 15 49 49 H 1.08006 * 119.71394 * 179.69819 * 18 17 16 50 50 H 1.07994 * 120.06139 * 179.97438 * 19 18 17 51 51 H 0.97000 * 120.00225 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9951 1.3710 0.0000 4 6 3.5180 1.3342 0.1470 5 6 4.1188 0.5371 -1.0141 6 6 3.5182 -0.8713 -1.0208 7 6 3.8874 -1.5903 0.2784 8 6 4.0681 -1.6565 -2.2132 9 6 1.9953 -0.7706 -1.1339 10 1 1.7327 -0.2705 -2.0660 11 6 1.3891 -2.1754 -1.1208 12 7 1.7605 -2.8789 -2.3509 13 6 1.4043 -4.1673 -2.5241 14 8 0.7751 -4.7457 -1.6590 15 6 1.7775 -4.8751 -3.7623 16 6 2.4063 -4.1916 -4.7995 17 6 2.7549 -4.8594 -5.9584 18 6 2.4843 -6.2131 -6.1045 19 6 1.8639 -6.9156 -5.0971 20 6 1.4987 -6.2594 -3.9072 21 6 0.8626 -6.9694 -2.8697 22 1 1.0986 -6.7472 -1.8395 23 6 -0.0774 -7.9649 -3.1748 24 7 -0.3849 -8.2134 -4.4198 25 14 -0.8894 -8.9354 -1.8007 26 1 -2.1313 -8.2428 -1.3725 27 1 -1.2251 -10.2974 -2.2880 28 1 0.0426 -9.0375 -0.6491 29 1 -0.3633 -1.0077 0.2013 30 1 -0.3633 0.6782 0.7720 31 1 -0.3633 0.3294 -0.9735 32 1 1.5632 1.9257 0.8329 33 1 1.7325 1.8610 -0.9376 34 1 3.7811 0.8568 1.0909 35 1 3.9098 2.3513 0.1314 36 1 5.1998 0.4715 -0.8901 37 1 3.8889 1.0356 -1.9557 38 1 3.4566 -2.5915 0.2745 39 1 4.9721 -1.6618 0.3584 40 1 3.4966 -1.0299 1.1275 41 1 3.6765 -1.2337 -3.1384 42 1 5.1564 -1.5951 -2.2179 43 1 3.7634 -2.6999 -2.1330 44 1 0.3034 -2.1020 -1.0578 45 1 1.7667 -2.7259 -0.2591 46 1 2.2626 -2.4176 -3.0408 47 1 2.6217 -3.1382 -4.6985 48 1 3.2420 -4.3223 -6.7588 49 1 2.7591 -6.7184 -7.0187 50 1 1.6570 -7.9684 -5.2197 51 1 -1.0346 -8.9020 -4.6308 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601542065.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:13 Heat of formation + Delta-G solvation = -23.059423 kcal Electronic energy + Delta-G solvation = -29740.454363 eV Core-core repulsion = 26024.715755 eV Total energy + Delta-G solvation = -3715.738609 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.59043 -40.31729 -38.53115 -36.32202 -35.73699 -35.35930 -33.01822 -31.78928 -31.30220 -29.16171 -28.22379 -27.51678 -27.34729 -26.15397 -23.85843 -22.83380 -22.37655 -22.21812 -21.08980 -19.54889 -19.17222 -17.98478 -17.21385 -16.99502 -16.80410 -16.46451 -15.94808 -15.89861 -15.67241 -15.39794 -15.06772 -14.80677 -14.69779 -14.48887 -14.23600 -13.97102 -13.88697 -13.54877 -13.34885 -13.23856 -13.08957 -12.90431 -12.84820 -12.79553 -12.71783 -12.49320 -12.30641 -12.29489 -12.13501 -11.91210 -11.81408 -11.49911 -11.34574 -11.17469 -11.11754 -10.97857 -10.28008 -9.79619 -9.37729 -9.28442 -9.17237 -8.62724 -6.36103 0.51718 1.01810 1.32426 1.46164 1.48353 2.21741 2.32860 2.36973 2.81600 3.07626 3.57875 3.65800 3.72556 3.89207 4.12685 4.15281 4.23318 4.32166 4.36415 4.39865 4.43263 4.51431 4.55854 4.59642 4.64514 4.73120 4.77589 4.82359 4.90222 4.95953 4.97292 4.99911 5.03113 5.10728 5.11233 5.16858 5.20723 5.25185 5.32636 5.35366 5.39060 5.47767 5.61677 5.63333 5.64865 5.81847 6.05924 6.08405 6.11511 6.15268 6.34670 6.64728 6.81784 6.92682 7.01443 7.67143 8.33850 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015128 B = 0.003554 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.474634 B = 7877.512224 C = 9038.061808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.540 5.540 3 C 0.056 3.944 4 C -0.116 4.116 5 C -0.107 4.107 6 C -0.052 4.052 7 C -0.131 4.131 8 C -0.163 4.163 9 C 0.097 3.903 10 H 0.046 0.954 11 C 0.128 3.872 12 N -0.724 5.724 13 C 0.557 3.443 14 O -0.578 6.578 15 C -0.273 4.273 16 C -0.057 4.057 17 C -0.229 4.229 18 C -0.093 4.093 19 C -0.173 4.173 20 C 0.115 3.885 21 C -0.457 4.457 22 H 0.076 0.924 23 C 0.031 3.969 24 N -0.830 5.830 25 Si 0.979 3.021 26 H -0.273 1.273 27 H -0.256 1.256 28 H -0.265 1.265 29 H 0.057 0.943 30 H 0.086 0.914 31 H 0.026 0.974 32 H 0.088 0.912 33 H 0.034 0.966 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.030 0.970 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.054 0.946 44 H 0.048 0.952 45 H 0.058 0.942 46 H 0.407 0.593 47 H 0.128 0.872 48 H 0.134 0.866 49 H 0.121 0.879 50 H 0.103 0.897 51 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.271 18.930 4.708 20.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.265 5.265 3 C -0.072 4.072 4 C -0.154 4.154 5 C -0.144 4.144 6 C -0.052 4.052 7 C -0.189 4.189 8 C -0.221 4.221 9 C -0.012 4.012 10 H 0.064 0.936 11 C 0.004 3.996 12 N -0.382 5.382 13 C 0.350 3.650 14 O -0.460 6.460 15 C -0.278 4.278 16 C -0.076 4.076 17 C -0.248 4.248 18 C -0.112 4.112 19 C -0.192 4.192 20 C 0.111 3.889 21 C -0.486 4.486 22 H 0.094 0.906 23 C -0.183 4.183 24 N -0.457 5.457 25 Si 0.801 3.199 26 H -0.199 1.199 27 H -0.180 1.180 28 H -0.189 1.189 29 H 0.076 0.924 30 H 0.105 0.895 31 H 0.045 0.955 32 H 0.106 0.894 33 H 0.053 0.947 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.049 0.951 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.073 0.927 44 H 0.066 0.934 45 H 0.076 0.924 46 H 0.248 0.752 47 H 0.146 0.854 48 H 0.152 0.848 49 H 0.139 0.861 50 H 0.121 0.879 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.826 18.179 5.622 20.216 hybrid contribution -0.940 -0.379 -0.593 1.174 sum 5.886 17.800 5.029 19.411 Atomic orbital electron populations 1.22463 0.87078 1.02477 1.00854 1.61814 1.07833 1.14557 1.42291 1.22203 0.96293 0.87621 1.01047 1.21648 0.93735 1.00876 0.99132 1.21654 1.00469 0.93302 0.98988 1.20533 0.92161 0.96528 0.95978 1.21810 1.00600 0.99084 0.97356 1.22313 1.01982 1.00487 0.97296 1.21692 0.95336 0.91673 0.92459 0.93580 1.21323 0.98588 0.92451 0.87261 1.46226 1.59115 1.11721 1.21154 1.18474 0.78297 0.81493 0.86770 1.90663 1.42023 1.67627 1.45662 1.19887 1.16440 0.94454 0.96975 1.21024 0.95453 0.98427 0.92699 1.20823 1.10047 0.94802 0.99154 1.21206 0.97169 0.95163 0.97646 1.21381 1.02499 0.99650 0.95703 1.17857 0.87798 0.90318 0.92877 1.19994 1.19263 1.14266 0.95110 0.90635 1.26712 0.96784 0.96087 0.98676 1.69722 1.27801 1.28016 1.20204 0.85260 0.78543 0.77627 0.78516 1.19854 1.18031 1.18940 0.92386 0.89512 0.95546 0.89410 0.94743 0.91186 0.89643 0.90606 0.91676 0.95114 0.92416 0.91151 0.91820 0.91044 0.92724 0.93396 0.92362 0.75221 0.85433 0.84785 0.86121 0.87936 0.90222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 8.89 127.69 1.13 1.52 16 2 N -0.54 -11.17 4.03 -897.16 -3.62 -14.79 16 3 C 0.06 0.86 5.46 86.33 0.47 1.33 16 4 C -0.12 -1.58 5.74 30.65 0.18 -1.40 16 5 C -0.11 -1.63 4.78 30.67 0.15 -1.48 16 6 C -0.05 -1.06 0.55 -52.13 -0.03 -1.09 16 7 C -0.13 -3.01 7.67 71.98 0.55 -2.46 16 8 C -0.16 -3.54 6.83 71.98 0.49 -3.05 16 9 C 0.10 2.27 1.32 44.94 0.06 2.32 16 10 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 11 C 0.13 4.07 4.62 86.38 0.40 4.47 16 12 N -0.72 -25.69 3.56 -466.35 -1.66 -27.35 16 13 C 0.56 26.56 7.72 86.66 0.67 27.22 16 14 O -0.58 -32.42 13.64 -4.06 -0.06 -32.48 16 15 C -0.27 -13.46 5.92 -19.70 -0.12 -13.58 16 16 C -0.06 -2.30 9.52 22.50 0.21 -2.09 16 17 C -0.23 -8.88 10.03 22.41 0.22 -8.65 16 18 C -0.09 -4.04 10.01 22.26 0.22 -3.82 16 19 C -0.17 -9.01 8.61 22.72 0.20 -8.82 16 20 C 0.12 6.44 5.50 -21.11 -0.12 6.32 16 21 C -0.46 -26.93 7.56 23.41 0.18 -26.76 16 22 H 0.08 4.70 6.08 -2.91 -0.02 4.68 16 23 C 0.03 1.69 5.36 85.36 0.46 2.15 16 24 N -0.83 -45.36 11.01 21.88 0.24 -45.12 16 25 Si 0.98 43.34 29.56 68.60 2.03 45.37 16 26 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 27 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 28 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 29 H 0.06 1.39 6.48 -2.39 -0.02 1.38 16 30 H 0.09 1.39 7.96 -2.39 -0.02 1.37 16 31 H 0.03 0.53 8.11 -2.38 -0.02 0.51 16 32 H 0.09 1.14 8.00 -2.39 -0.02 1.12 16 33 H 0.03 0.52 8.14 -2.38 -0.02 0.50 16 34 H 0.07 1.05 6.58 -2.39 -0.02 1.03 16 35 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.03 0.87 6.25 -2.39 -0.01 0.86 16 39 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.07 1.56 6.01 -2.39 -0.01 1.55 16 41 H 0.06 1.21 7.31 -2.39 -0.02 1.19 16 42 H 0.07 1.36 8.13 -2.39 -0.02 1.34 16 43 H 0.05 1.54 5.82 -2.39 -0.01 1.52 16 44 H 0.05 1.65 6.03 -2.39 -0.01 1.63 16 45 H 0.06 2.10 6.02 -2.39 -0.01 2.08 16 46 H 0.41 12.11 3.60 -92.71 -0.33 11.78 16 47 H 0.13 3.99 6.43 -2.91 -0.02 3.97 16 48 H 0.13 4.09 8.06 -2.91 -0.02 4.07 16 49 H 0.12 4.45 8.06 -2.91 -0.02 4.42 16 50 H 0.10 5.61 6.58 -2.91 -0.02 5.59 16 51 H 0.29 14.21 8.29 -92.71 -0.77 13.45 16 Total: -1.00 -68.16 377.85 2.87 -65.28 By element: Atomic # 1 Polarization: 36.32 SS G_CDS: 0.60 Total: 36.92 kcal Atomic # 6 Polarization: -33.18 SS G_CDS: 5.33 Total: -27.85 kcal Atomic # 7 Polarization: -82.22 SS G_CDS: -5.03 Total: -87.25 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -0.06 Total: -32.48 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -68.16 2.87 -65.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601542065.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.225 kcal (2) G-P(sol) polarization free energy of solvation -68.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds