Wall clock time and date at job start Tue Mar 31 2020 16:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47355 * 2 1 4 4 C 1.53000 * 109.47472 * 120.00039 * 2 1 3 5 5 N 1.46905 * 109.46793 * 176.09697 * 4 2 1 6 6 C 1.46848 * 110.99799 * 199.75783 * 5 4 2 7 7 C 1.53035 * 109.52414 * 174.16283 * 6 5 4 8 8 C 1.53126 * 109.27826 * 59.18189 * 7 6 5 9 9 C 1.52995 * 109.57311 * 182.40944 * 8 7 6 10 10 C 1.53122 * 109.15991 * 302.34601 * 8 7 6 11 11 C 1.46851 * 111.00024 * 75.55361 * 5 4 2 12 12 N 1.46507 * 109.47094 * 240.00247 * 2 1 3 13 13 C 1.34778 * 119.99838 * 84.17084 * 12 2 1 14 14 O 1.21611 * 120.00167 * 0.02562 * 13 12 2 15 15 C 1.47432 * 119.99661 * 180.02562 * 13 12 2 16 16 C 1.39224 * 120.28476 * 354.60945 * 15 13 12 17 17 C 1.38221 * 120.09619 * 180.27470 * 16 15 13 18 18 C 1.38827 * 120.66811 * 359.49272 * 17 16 15 19 19 C 1.37598 * 120.57410 * 0.51409 * 18 17 16 20 20 C 1.40703 * 119.87994 * 359.74599 * 19 18 17 21 21 C 1.40887 * 120.32613 * 180.02562 * 20 19 18 22 22 H 1.07999 * 120.00374 * 146.04508 * 21 20 19 23 23 C 1.40280 * 120.00133 * 326.05384 * 21 20 19 24 24 N 1.30626 * 119.99639 * 350.70494 * 23 21 20 25 25 Si 1.86800 * 119.99954 * 170.71684 * 23 21 20 26 26 H 1.48498 * 109.47262 * 89.99724 * 25 23 21 27 27 H 1.48506 * 109.46772 * 209.99380 * 25 23 21 28 28 H 1.48500 * 109.47282 * 329.99040 * 25 23 21 29 29 H 1.09005 * 109.46833 * 299.99634 * 1 2 3 30 30 H 1.08994 * 109.47583 * 59.99703 * 1 2 3 31 31 H 1.08998 * 109.47007 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47228 * 296.09594 * 4 2 1 33 33 H 1.08998 * 109.46925 * 56.10057 * 4 2 1 34 34 H 1.09003 * 109.46002 * 294.17969 * 6 5 4 35 35 H 1.08997 * 109.46298 * 54.14529 * 6 5 4 36 36 H 1.08998 * 109.50796 * 299.23858 * 7 6 5 37 37 H 1.08997 * 109.53670 * 179.14021 * 7 6 5 38 38 H 1.08997 * 109.52200 * 62.24655 * 8 7 6 39 39 H 1.09003 * 109.46938 * 179.71275 * 9 8 7 40 40 H 1.08997 * 109.47598 * 299.70809 * 9 8 7 41 41 H 1.09003 * 109.47644 * 59.71716 * 9 8 7 42 42 H 1.09002 * 109.50290 * 297.71494 * 10 8 7 43 43 H 1.08992 * 109.50392 * 177.59346 * 10 8 7 44 44 H 1.08999 * 109.45955 * 305.84957 * 11 5 4 45 45 H 1.08996 * 109.46263 * 65.82635 * 11 5 4 46 46 H 0.97001 * 119.99978 * 264.17457 * 12 2 1 47 47 H 1.08003 * 119.95321 * 0.02562 * 16 15 13 48 48 H 1.07996 * 119.66498 * 179.72790 * 17 16 15 49 49 H 1.08003 * 119.71069 * 180.27944 * 18 17 16 50 50 H 1.08004 * 120.05788 * 179.75988 * 19 18 17 51 51 H 0.97006 * 119.99430 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5061 -0.8033 1.2028 6 6 4.0025 -1.8580 2.0959 7 6 5.5141 -2.0127 1.9138 8 6 6.2007 -0.6820 2.2340 9 6 7.7065 -0.8119 1.9963 10 6 5.6312 0.4092 1.3233 11 6 4.1162 0.4936 1.5224 12 7 2.0183 -0.6906 -1.1963 13 6 2.1312 -0.0223 -2.3613 14 8 1.8281 1.1540 -2.4194 15 6 2.6221 -0.7175 -3.5652 16 6 3.0761 -2.0309 -3.4814 17 6 3.5408 -2.6770 -4.6116 18 6 3.5517 -2.0330 -5.8414 19 6 3.1094 -0.7350 -5.9556 20 6 2.6364 -0.0531 -4.8194 21 6 2.1808 1.2759 -4.9258 22 1 1.3676 1.6194 -4.3036 23 6 2.7833 2.1528 -5.8400 24 7 3.8772 1.7994 -6.4602 25 14 2.0214 3.8261 -6.1701 26 1 2.5845 4.8220 -5.2234 27 1 2.3239 4.2416 -7.5634 28 1 0.5500 3.7451 -5.9862 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.7350 -0.1686 2.1379 33 1 1.6208 -1.7267 1.2848 34 1 3.7869 -1.5895 3.1301 35 1 3.5095 -2.7998 1.8550 36 1 5.7297 -2.2947 0.8833 37 1 5.8853 -2.7850 2.5876 38 1 6.0177 -0.4191 3.2758 39 1 8.1928 0.1376 2.2198 40 1 8.1111 -1.5888 2.6450 41 1 7.8885 -1.0770 0.9548 42 1 5.8484 0.1654 0.2833 43 1 6.0853 1.3674 1.5755 44 1 3.7056 1.2599 0.8649 45 1 3.9001 0.7510 2.5593 46 1 2.2604 -1.6288 -1.1498 47 1 3.0690 -2.5444 -2.5313 48 1 3.8956 -3.6944 -4.5378 49 1 3.9140 -2.5540 -6.7153 50 1 3.1252 -0.2407 -6.9158 51 1 4.2936 2.4057 -7.0927 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601670635.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:40 Heat of formation + Delta-G solvation = -31.745259 kcal Electronic energy + Delta-G solvation = -29276.821994 eV Core-core repulsion = 25560.706739 eV Total energy + Delta-G solvation = -3716.115255 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.52939 -38.65025 -36.89865 -35.54627 -33.79883 -33.39002 -31.00870 -30.81142 -29.74243 -28.93748 -28.26734 -25.38325 -25.00527 -23.30529 -22.54143 -21.83370 -20.99515 -20.11437 -19.70715 -19.22197 -17.39955 -16.32378 -15.97718 -15.67953 -15.13958 -14.73141 -14.62828 -14.40979 -14.16242 -14.04804 -13.82561 -13.61140 -13.21956 -13.07261 -12.76795 -12.62983 -12.43283 -12.40209 -12.22481 -11.94219 -11.80172 -11.59157 -11.51449 -11.41922 -11.20697 -11.04398 -10.93107 -10.74394 -10.63708 -10.60376 -10.43925 -10.32357 -10.14485 -9.98052 -9.58321 -9.18780 -8.32331 -8.21239 -8.14072 -7.47991 -7.25736 -6.71607 -4.29311 2.47979 2.89264 3.14163 3.21775 3.29754 3.79170 4.03665 4.17065 4.31515 4.65007 4.73459 4.74081 4.77924 4.94044 5.20015 5.24934 5.31134 5.35709 5.45698 5.50608 5.58578 5.59068 5.63042 5.65590 5.71738 5.78349 5.79829 5.86977 5.90928 6.01198 6.07546 6.09692 6.13836 6.18173 6.18842 6.35456 6.41280 6.43569 6.49143 6.74902 7.05094 7.07888 7.12876 7.20561 7.29075 7.44369 7.56483 7.73137 7.98954 8.08831 8.27648 8.58672 8.76830 8.92453 9.00107 9.59894 10.23922 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011139 B = 0.003638 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.124775 B = 7695.119002 C = 7962.992131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.153 3.847 3 H 0.080 0.920 4 C 0.049 3.951 5 N -0.529 5.529 6 C 0.058 3.942 7 C -0.112 4.112 8 C -0.092 4.092 9 C -0.146 4.146 10 C -0.112 4.112 11 C 0.058 3.942 12 N -0.726 5.726 13 C 0.567 3.433 14 O -0.545 6.545 15 C -0.257 4.257 16 C -0.054 4.054 17 C -0.248 4.248 18 C -0.096 4.096 19 C -0.151 4.151 20 C 0.146 3.854 21 C -0.417 4.417 22 H 0.105 0.895 23 C 0.070 3.930 24 N -0.796 5.796 25 Si 0.916 3.084 26 H -0.269 1.269 27 H -0.279 1.279 28 H -0.260 1.260 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.043 0.957 33 H 0.075 0.925 34 H 0.027 0.973 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.076 0.924 43 H 0.063 0.937 44 H 0.078 0.922 45 H 0.027 0.973 46 H 0.392 0.608 47 H 0.090 0.910 48 H 0.089 0.911 49 H 0.089 0.911 50 H 0.116 0.884 51 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.370 -5.485 15.592 16.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.047 3.953 3 H 0.098 0.902 4 C -0.080 4.080 5 N -0.254 5.254 6 C -0.070 4.070 7 C -0.149 4.149 8 C -0.111 4.111 9 C -0.204 4.204 10 C -0.150 4.150 11 C -0.070 4.070 12 N -0.379 5.379 13 C 0.361 3.639 14 O -0.424 6.424 15 C -0.262 4.262 16 C -0.073 4.073 17 C -0.267 4.267 18 C -0.115 4.115 19 C -0.170 4.170 20 C 0.142 3.858 21 C -0.445 4.445 22 H 0.123 0.877 23 C -0.148 4.148 24 N -0.421 5.421 25 Si 0.741 3.259 26 H -0.194 1.194 27 H -0.204 1.204 28 H -0.184 1.184 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.045 0.955 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.097 0.903 45 H 0.045 0.955 46 H 0.227 0.773 47 H 0.108 0.892 48 H 0.107 0.893 49 H 0.107 0.893 50 H 0.134 0.866 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.464 -4.645 14.915 15.691 hybrid contribution -0.160 0.424 0.719 0.850 sum 1.305 -4.221 15.634 16.247 Atomic orbital electron populations 1.22163 0.95997 1.01657 1.02215 1.20656 0.92798 0.97430 0.84457 0.90211 1.22434 0.87672 1.00945 0.96934 1.61801 1.05375 1.05580 1.52620 1.22082 0.95980 0.95128 0.93827 1.21645 0.93965 0.96717 1.02621 1.21165 0.95135 0.95686 0.99091 1.21809 0.95268 1.01297 1.01977 1.21643 0.94245 0.98100 1.01025 1.22098 0.95175 0.91272 0.98437 1.45790 1.69560 1.13982 1.08590 1.18351 0.76780 0.86224 0.82530 1.90652 1.50722 1.16154 1.84851 1.19500 1.17556 0.96107 0.93030 1.20655 0.96743 0.93671 0.96236 1.20265 1.13306 0.99383 0.93767 1.20783 0.99377 0.95386 0.95969 1.21338 1.03844 0.92916 0.98888 1.17478 0.86827 0.92625 0.88885 1.20156 1.14945 0.94569 1.14831 0.87748 1.26102 0.94070 1.01182 0.93461 1.69728 1.14699 1.37061 1.20622 0.86182 0.80821 0.81279 0.77664 1.19419 1.20419 1.18385 0.92691 0.91472 0.92867 0.93859 0.90662 0.95486 0.90900 0.90717 0.91922 0.92014 0.92873 0.93000 0.92334 0.90577 0.91819 0.90320 0.95474 0.77330 0.89199 0.89314 0.89288 0.86600 0.90883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 9.47 37.16 0.35 -1.86 16 2 C 0.15 2.29 2.58 -67.93 -0.18 2.11 16 3 H 0.08 1.39 6.42 -51.93 -0.33 1.05 16 4 C 0.05 0.57 4.55 -3.82 -0.02 0.55 16 5 N -0.53 -6.51 4.33 -234.67 -1.02 -7.52 16 6 C 0.06 0.59 5.43 -3.83 -0.02 0.57 16 7 C -0.11 -1.12 5.38 -26.65 -0.14 -1.26 16 8 C -0.09 -0.93 2.79 -90.49 -0.25 -1.18 16 9 C -0.15 -1.36 9.20 37.15 0.34 -1.02 16 10 C -0.11 -1.34 5.38 -26.65 -0.14 -1.48 16 11 C 0.06 0.72 5.29 -3.83 -0.02 0.70 16 12 N -0.73 -12.89 4.78 -54.87 -0.26 -13.16 16 13 C 0.57 13.15 7.67 -12.52 -0.10 13.05 16 14 O -0.54 -14.30 13.26 5.27 0.07 -14.23 16 15 C -0.26 -6.35 5.92 -104.37 -0.62 -6.97 16 16 C -0.05 -1.18 9.52 -39.22 -0.37 -1.55 16 17 C -0.25 -5.38 10.03 -39.37 -0.39 -5.78 16 18 C -0.10 -2.22 10.01 -39.60 -0.40 -2.62 16 19 C -0.15 -3.90 8.62 -38.88 -0.34 -4.23 16 20 C 0.15 3.97 5.51 -106.55 -0.59 3.38 16 21 C -0.42 -11.61 7.69 -37.81 -0.29 -11.90 16 22 H 0.10 3.01 5.90 -52.49 -0.31 2.70 16 23 C 0.07 1.82 5.25 -17.30 -0.09 1.73 16 24 N -0.80 -21.03 11.13 55.56 0.62 -20.41 16 25 Si 0.92 20.05 29.57 -169.99 -5.03 15.02 16 26 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 27 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 28 H -0.26 -5.67 7.11 56.52 0.40 -5.26 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.04 0.46 8.00 -51.93 -0.42 0.04 16 33 H 0.07 0.79 7.80 -51.93 -0.40 0.38 16 34 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.07 0.69 7.93 -51.93 -0.41 0.28 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.08 1.14 6.77 -51.93 -0.35 0.79 16 45 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 46 H 0.39 6.37 6.65 -40.82 -0.27 6.09 16 47 H 0.09 1.66 6.43 -52.48 -0.34 1.32 16 48 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 49 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 50 H 0.12 3.07 6.58 -52.48 -0.35 2.72 16 51 H 0.28 6.75 8.29 -40.82 -0.34 6.41 16 LS Contribution 397.44 15.07 5.99 5.99 Total: -1.00 -29.56 397.44 -11.55 -41.11 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -8.66 Total: 10.96 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -3.26 Total: -17.75 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: -0.66 Total: -41.09 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: 0.07 Total: -14.23 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.03 Total: 15.02 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -29.56 -11.55 -41.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601670635.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.365 kcal (2) G-P(sol) polarization free energy of solvation -29.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds