Wall clock time and date at job start Tue Mar 31 2020 16:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47355 * 2 1 4 4 C 1.53000 * 109.47472 * 120.00039 * 2 1 3 5 5 N 1.46905 * 109.46793 * 176.09697 * 4 2 1 6 6 C 1.46848 * 110.99799 * 199.75783 * 5 4 2 7 7 C 1.53035 * 109.52414 * 174.16283 * 6 5 4 8 8 C 1.53126 * 109.27826 * 59.18189 * 7 6 5 9 9 C 1.52995 * 109.57311 * 182.40944 * 8 7 6 10 10 C 1.53122 * 109.15991 * 302.34601 * 8 7 6 11 11 C 1.46851 * 111.00024 * 75.55361 * 5 4 2 12 12 N 1.46507 * 109.47094 * 240.00247 * 2 1 3 13 13 C 1.34778 * 119.99838 * 84.17084 * 12 2 1 14 14 O 1.21611 * 120.00167 * 0.02562 * 13 12 2 15 15 C 1.47432 * 119.99661 * 180.02562 * 13 12 2 16 16 C 1.39224 * 120.28476 * 354.60945 * 15 13 12 17 17 C 1.38221 * 120.09619 * 180.27470 * 16 15 13 18 18 C 1.38827 * 120.66811 * 359.49272 * 17 16 15 19 19 C 1.37598 * 120.57410 * 0.51409 * 18 17 16 20 20 C 1.40703 * 119.87994 * 359.74599 * 19 18 17 21 21 C 1.40887 * 120.32613 * 180.02562 * 20 19 18 22 22 H 1.07999 * 120.00374 * 146.04508 * 21 20 19 23 23 C 1.40280 * 120.00133 * 326.05384 * 21 20 19 24 24 N 1.30626 * 119.99639 * 350.70494 * 23 21 20 25 25 Si 1.86800 * 119.99954 * 170.71684 * 23 21 20 26 26 H 1.48498 * 109.47262 * 89.99724 * 25 23 21 27 27 H 1.48506 * 109.46772 * 209.99380 * 25 23 21 28 28 H 1.48500 * 109.47282 * 329.99040 * 25 23 21 29 29 H 1.09005 * 109.46833 * 299.99634 * 1 2 3 30 30 H 1.08994 * 109.47583 * 59.99703 * 1 2 3 31 31 H 1.08998 * 109.47007 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47228 * 296.09594 * 4 2 1 33 33 H 1.08998 * 109.46925 * 56.10057 * 4 2 1 34 34 H 1.09003 * 109.46002 * 294.17969 * 6 5 4 35 35 H 1.08997 * 109.46298 * 54.14529 * 6 5 4 36 36 H 1.08998 * 109.50796 * 299.23858 * 7 6 5 37 37 H 1.08997 * 109.53670 * 179.14021 * 7 6 5 38 38 H 1.08997 * 109.52200 * 62.24655 * 8 7 6 39 39 H 1.09003 * 109.46938 * 179.71275 * 9 8 7 40 40 H 1.08997 * 109.47598 * 299.70809 * 9 8 7 41 41 H 1.09003 * 109.47644 * 59.71716 * 9 8 7 42 42 H 1.09002 * 109.50290 * 297.71494 * 10 8 7 43 43 H 1.08992 * 109.50392 * 177.59346 * 10 8 7 44 44 H 1.08999 * 109.45955 * 305.84957 * 11 5 4 45 45 H 1.08996 * 109.46263 * 65.82635 * 11 5 4 46 46 H 0.97001 * 119.99978 * 264.17457 * 12 2 1 47 47 H 1.08003 * 119.95321 * 0.02562 * 16 15 13 48 48 H 1.07996 * 119.66498 * 179.72790 * 17 16 15 49 49 H 1.08003 * 119.71069 * 180.27944 * 18 17 16 50 50 H 1.08004 * 120.05788 * 179.75988 * 19 18 17 51 51 H 0.97006 * 119.99430 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5061 -0.8033 1.2028 6 6 4.0025 -1.8580 2.0959 7 6 5.5141 -2.0127 1.9138 8 6 6.2007 -0.6820 2.2340 9 6 7.7065 -0.8119 1.9963 10 6 5.6312 0.4092 1.3233 11 6 4.1162 0.4936 1.5224 12 7 2.0183 -0.6906 -1.1963 13 6 2.1312 -0.0223 -2.3613 14 8 1.8281 1.1540 -2.4194 15 6 2.6221 -0.7175 -3.5652 16 6 3.0761 -2.0309 -3.4814 17 6 3.5408 -2.6770 -4.6116 18 6 3.5517 -2.0330 -5.8414 19 6 3.1094 -0.7350 -5.9556 20 6 2.6364 -0.0531 -4.8194 21 6 2.1808 1.2759 -4.9258 22 1 1.3676 1.6194 -4.3036 23 6 2.7833 2.1528 -5.8400 24 7 3.8772 1.7994 -6.4602 25 14 2.0214 3.8261 -6.1701 26 1 2.5845 4.8220 -5.2234 27 1 2.3239 4.2416 -7.5634 28 1 0.5500 3.7451 -5.9862 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.7350 -0.1686 2.1379 33 1 1.6208 -1.7267 1.2848 34 1 3.7869 -1.5895 3.1301 35 1 3.5095 -2.7998 1.8550 36 1 5.7297 -2.2947 0.8833 37 1 5.8853 -2.7850 2.5876 38 1 6.0177 -0.4191 3.2758 39 1 8.1928 0.1376 2.2198 40 1 8.1111 -1.5888 2.6450 41 1 7.8885 -1.0770 0.9548 42 1 5.8484 0.1654 0.2833 43 1 6.0853 1.3674 1.5755 44 1 3.7056 1.2599 0.8649 45 1 3.9001 0.7510 2.5593 46 1 2.2604 -1.6288 -1.1498 47 1 3.0690 -2.5444 -2.5313 48 1 3.8956 -3.6944 -4.5378 49 1 3.9140 -2.5540 -6.7153 50 1 3.1252 -0.2407 -6.9158 51 1 4.2936 2.4057 -7.0927 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601670635.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:39 Heat of formation + Delta-G solvation = -48.541870 kcal Electronic energy + Delta-G solvation = -29277.550350 eV Core-core repulsion = 25560.706739 eV Total energy + Delta-G solvation = -3716.843610 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.85095 -40.01416 -38.60759 -36.88458 -35.58334 -34.69951 -32.51240 -31.75555 -31.63172 -30.57927 -29.19978 -27.26983 -26.03653 -24.33059 -24.08640 -22.93430 -22.64996 -21.50745 -20.97267 -20.52714 -19.29628 -17.98501 -17.20952 -17.02341 -16.80995 -15.97677 -15.84110 -15.61196 -15.46782 -15.29822 -15.23020 -14.92579 -14.81228 -14.47217 -14.17667 -14.07656 -13.88504 -13.51745 -13.29983 -13.25273 -13.05011 -12.85207 -12.75706 -12.71935 -12.61711 -12.45985 -12.43139 -12.25920 -12.10776 -11.89023 -11.79013 -11.53128 -11.43216 -11.14054 -11.12019 -11.06504 -10.14206 -9.76190 -9.32327 -9.18502 -9.16685 -8.64197 -6.31656 0.59622 1.04774 1.32525 1.46145 1.50360 2.21838 2.46598 2.60751 2.83678 2.96687 3.77077 3.78519 3.86637 3.89082 3.98631 4.24067 4.32138 4.36604 4.41025 4.42846 4.48445 4.52070 4.59359 4.64333 4.65508 4.70653 4.77990 4.80790 4.81339 4.88257 4.92486 4.96071 5.02673 5.13487 5.15968 5.19976 5.25644 5.28155 5.29143 5.32942 5.35071 5.39240 5.57000 5.67066 5.86238 5.89811 6.10788 6.14937 6.19837 6.26123 6.39410 6.71208 6.88372 6.99334 7.12902 7.83981 8.33481 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011139 B = 0.003638 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.124775 B = 7695.119002 C = 7962.992131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.149 3.851 3 H 0.048 0.952 4 C 0.059 3.941 5 N -0.549 5.549 6 C 0.059 3.941 7 C -0.110 4.110 8 C -0.087 4.087 9 C -0.144 4.144 10 C -0.111 4.111 11 C 0.061 3.939 12 N -0.704 5.704 13 C 0.562 3.438 14 O -0.585 6.585 15 C -0.276 4.276 16 C -0.051 4.051 17 C -0.238 4.238 18 C -0.094 4.094 19 C -0.179 4.179 20 C 0.115 3.885 21 C -0.457 4.457 22 H 0.081 0.919 23 C 0.031 3.969 24 N -0.826 5.826 25 Si 0.978 3.022 26 H -0.272 1.272 27 H -0.256 1.256 28 H -0.263 1.263 29 H 0.082 0.918 30 H 0.028 0.972 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.041 0.959 35 H 0.086 0.914 36 H 0.054 0.946 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.054 0.946 40 H 0.067 0.933 41 H 0.043 0.957 42 H 0.043 0.957 43 H 0.066 0.934 44 H 0.047 0.953 45 H 0.044 0.956 46 H 0.403 0.597 47 H 0.129 0.871 48 H 0.131 0.869 49 H 0.118 0.882 50 H 0.098 0.902 51 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.620 -8.066 18.152 19.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.044 3.956 3 H 0.066 0.934 4 C -0.069 4.069 5 N -0.274 5.274 6 C -0.068 4.068 7 C -0.148 4.148 8 C -0.106 4.106 9 C -0.202 4.202 10 C -0.149 4.149 11 C -0.067 4.067 12 N -0.356 5.356 13 C 0.354 3.646 14 O -0.468 6.468 15 C -0.280 4.280 16 C -0.070 4.070 17 C -0.257 4.257 18 C -0.112 4.112 19 C -0.199 4.199 20 C 0.111 3.889 21 C -0.486 4.486 22 H 0.099 0.901 23 C -0.183 4.183 24 N -0.453 5.453 25 Si 0.799 3.201 26 H -0.198 1.198 27 H -0.180 1.180 28 H -0.188 1.188 29 H 0.101 0.899 30 H 0.048 0.952 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.117 0.883 34 H 0.059 0.941 35 H 0.104 0.896 36 H 0.073 0.927 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.085 0.915 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.240 0.760 47 H 0.147 0.853 48 H 0.148 0.852 49 H 0.136 0.864 50 H 0.116 0.884 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.720 -7.280 17.504 19.035 hybrid contribution -0.194 1.042 0.043 1.061 sum 1.526 -6.238 17.547 18.685 Atomic orbital electron populations 1.22079 0.94705 1.02759 1.01733 1.20864 0.93783 0.96183 0.84801 0.93361 1.22342 0.87452 1.01913 0.95210 1.61749 1.05748 1.05845 1.54051 1.22143 0.95913 0.94728 0.94040 1.21644 0.94133 0.97033 1.01962 1.21142 0.95392 0.95007 0.99048 1.21792 0.94949 1.01987 1.01451 1.21614 0.94359 0.99255 0.99687 1.21995 0.95189 0.90976 0.98518 1.45562 1.67936 1.14197 1.07931 1.18351 0.76651 0.85818 0.83742 1.90630 1.52525 1.17965 1.85650 1.19917 1.17505 0.97576 0.93047 1.21033 0.95233 0.92441 0.98256 1.20774 1.11166 1.00940 0.92776 1.21156 0.97837 0.94286 0.97937 1.21281 1.06217 0.94428 0.97959 1.17857 0.87649 0.92995 0.90412 1.20110 1.16047 0.95934 1.16542 0.90137 1.26774 0.94271 1.04270 0.92985 1.69755 1.15536 1.38479 1.21519 0.85282 0.79542 0.76890 0.78375 1.19755 1.18038 1.18754 0.89913 0.95247 0.90867 0.91914 0.88266 0.94095 0.89584 0.92678 0.89764 0.90676 0.92660 0.91388 0.93739 0.93782 0.91527 0.93460 0.93794 0.76042 0.85309 0.85162 0.86413 0.88360 0.90195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 9.47 71.98 0.68 -3.38 16 2 C 0.15 4.38 2.58 44.99 0.12 4.50 16 3 H 0.05 1.75 6.42 -2.39 -0.02 1.74 16 4 C 0.06 1.21 4.55 86.30 0.39 1.60 16 5 N -0.55 -12.36 4.33 -896.35 -3.89 -16.25 16 6 C 0.06 0.99 5.43 86.32 0.47 1.46 16 7 C -0.11 -1.89 5.38 30.65 0.16 -1.73 16 8 C -0.09 -1.58 2.79 -10.71 -0.03 -1.61 16 9 C -0.14 -2.46 9.20 71.98 0.66 -1.80 16 10 C -0.11 -2.64 5.38 30.65 0.16 -2.47 16 11 C 0.06 1.49 5.29 86.32 0.46 1.94 16 12 N -0.70 -24.76 4.78 -445.77 -2.13 -26.89 16 13 C 0.56 26.96 7.67 86.66 0.67 27.63 16 14 O -0.59 -32.82 13.26 -4.07 -0.05 -32.87 16 15 C -0.28 -13.91 5.92 -19.70 -0.12 -14.03 16 16 C -0.05 -2.13 9.52 22.50 0.21 -1.91 16 17 C -0.24 -9.62 10.03 22.41 0.22 -9.39 16 18 C -0.09 -4.21 10.01 22.26 0.22 -3.98 16 19 C -0.18 -9.58 8.62 22.72 0.20 -9.38 16 20 C 0.11 6.53 5.51 -21.11 -0.12 6.41 16 21 C -0.46 -27.24 7.69 23.42 0.18 -27.06 16 22 H 0.08 5.05 5.90 -2.91 -0.02 5.03 16 23 C 0.03 1.72 5.25 85.37 0.45 2.17 16 24 N -0.83 -45.78 11.13 21.88 0.24 -45.54 16 25 Si 0.98 43.25 29.57 68.60 2.03 45.28 16 26 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 27 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 28 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 29 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 30 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.06 1.10 8.00 -2.39 -0.02 1.08 16 33 H 0.10 1.61 7.80 -2.39 -0.02 1.59 16 34 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.09 1.25 7.93 -2.39 -0.02 1.23 16 36 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.05 1.43 6.77 -2.39 -0.02 1.41 16 45 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.40 12.23 6.65 -92.71 -0.62 11.61 16 47 H 0.13 4.27 6.43 -2.91 -0.02 4.26 16 48 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 49 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 50 H 0.10 5.48 6.58 -2.91 -0.02 5.46 16 51 H 0.29 14.40 8.29 -92.70 -0.77 13.63 16 Total: -1.00 -70.27 397.44 1.49 -68.78 By element: Atomic # 1 Polarization: 38.23 SS G_CDS: 0.29 Total: 38.53 kcal Atomic # 6 Polarization: -36.04 SS G_CDS: 5.00 Total: -31.04 kcal Atomic # 7 Polarization: -82.90 SS G_CDS: -5.77 Total: -88.67 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -0.05 Total: -32.87 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -70.27 1.49 -68.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601670635.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.239 kcal (2) G-P(sol) polarization free energy of solvation -70.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds