Wall clock time and date at job start Tue Mar 31 2020 16:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47372 * 2 1 4 4 C 1.52992 * 109.47358 * 239.99603 * 2 1 3 5 5 N 1.46902 * 109.47430 * 184.11674 * 4 2 1 6 6 C 1.46852 * 111.00321 * 170.28370 * 5 4 2 7 7 C 1.53033 * 109.52225 * 185.83869 * 6 5 4 8 8 C 1.53125 * 109.27637 * 300.81247 * 7 6 5 9 9 C 1.53004 * 109.56999 * 177.59244 * 8 7 6 10 10 C 1.53123 * 109.15643 * 57.65885 * 8 7 6 11 11 C 1.46852 * 110.99412 * 294.48876 * 5 4 2 12 12 N 1.46507 * 109.46932 * 119.99909 * 2 1 3 13 13 C 1.34772 * 119.99938 * 273.90090 * 12 2 1 14 14 O 1.21610 * 120.00307 * 0.02562 * 13 12 2 15 15 C 1.47435 * 120.00074 * 180.02562 * 13 12 2 16 16 C 1.39228 * 120.28228 * 356.56828 * 15 13 12 17 17 C 1.38220 * 120.08741 * 180.28126 * 16 15 13 18 18 C 1.38820 * 120.67975 * 359.69510 * 17 16 15 19 19 C 1.37593 * 120.57347 * 359.97438 * 18 17 16 20 20 C 1.40706 * 119.87956 * 0.02781 * 19 18 17 21 21 C 1.40892 * 120.33203 * 179.97438 * 20 19 18 22 22 H 1.07992 * 120.00484 * 216.36103 * 21 20 19 23 23 C 1.40275 * 119.99552 * 36.36140 * 21 20 19 24 24 N 1.30624 * 119.99770 * 193.97952 * 23 21 20 25 25 Si 1.86796 * 120.00075 * 13.97299 * 23 21 20 26 26 H 1.48506 * 109.47569 * 268.43681 * 25 23 21 27 27 H 1.48496 * 109.47330 * 28.44281 * 25 23 21 28 28 H 1.48503 * 109.47259 * 148.43918 * 25 23 21 29 29 H 1.09000 * 109.47372 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47229 * 300.00150 * 1 2 3 31 31 H 1.09001 * 109.47214 * 60.00020 * 1 2 3 32 32 H 1.09001 * 109.47361 * 304.11820 * 4 2 1 33 33 H 1.08997 * 109.47092 * 64.11320 * 4 2 1 34 34 H 1.09002 * 109.45462 * 305.85297 * 6 5 4 35 35 H 1.09000 * 109.46203 * 65.81689 * 6 5 4 36 36 H 1.09000 * 109.50325 * 180.87942 * 7 6 5 37 37 H 1.08999 * 109.50668 * 60.75596 * 7 6 5 38 38 H 1.08996 * 109.52491 * 297.75179 * 8 7 6 39 39 H 1.09000 * 109.47247 * 300.28658 * 9 8 7 40 40 H 1.08996 * 109.47145 * 60.29133 * 9 8 7 41 41 H 1.09008 * 109.46585 * 180.28890 * 9 8 7 42 42 H 1.09003 * 109.50065 * 182.40008 * 10 8 7 43 43 H 1.09002 * 109.50094 * 62.28746 * 10 8 7 44 44 H 1.09004 * 109.46540 * 294.17262 * 11 5 4 45 45 H 1.08993 * 109.46317 * 54.15724 * 11 5 4 46 46 H 0.96999 * 120.00382 * 93.90091 * 12 2 1 47 47 H 1.07996 * 119.95279 * 359.97438 * 16 15 13 48 48 H 1.08002 * 119.65613 * 179.71938 * 17 16 15 49 49 H 1.08003 * 119.71265 * 180.02562 * 18 17 16 50 50 H 1.08001 * 120.06299 * 180.02562 * 19 18 17 51 51 H 0.97004 * 119.99902 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5057 -0.8080 -1.2004 6 6 4.0162 -1.6892 -2.2584 7 6 5.5261 -1.8710 -2.0882 8 6 6.2115 -0.5037 -2.1622 9 6 7.7149 -0.6709 -1.9329 10 6 5.6275 0.4102 -1.0813 11 6 4.1146 0.5259 -1.2806 12 7 2.0183 -0.6906 1.1963 13 6 2.1680 -0.0130 2.3516 14 8 1.8974 1.1715 2.4013 15 6 2.6600 -0.7079 3.5553 16 6 2.9038 -2.0783 3.5245 17 6 3.3594 -2.7267 4.6570 18 6 3.5852 -2.0242 5.8328 19 6 3.3599 -0.6681 5.8922 20 6 2.8960 0.0159 4.7534 21 6 2.6616 1.4042 4.8037 22 1 1.8339 1.8323 4.2579 23 6 3.5034 2.2305 5.5629 24 7 3.1425 3.4558 5.8361 25 14 5.1403 1.5786 6.1831 26 1 4.9600 0.9951 7.5368 27 1 5.6399 0.5322 5.2555 28 1 6.1225 2.6904 6.2503 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6177 -1.7255 -1.2868 33 1 1.7381 -0.1667 -2.1376 34 1 3.5238 -2.6594 -2.1919 35 1 3.8114 -1.2441 -3.2321 36 1 5.9073 -2.5125 -2.8827 37 1 5.7308 -2.3287 -1.1204 38 1 6.0395 -0.0627 -3.1440 39 1 7.8858 -1.1140 -0.9518 40 1 8.1297 -1.3216 -2.7028 41 1 8.2004 0.3040 -1.9809 42 1 6.0811 1.3986 -1.1564 43 1 5.8338 -0.0116 -0.0977 44 1 3.9094 0.9606 -2.2590 45 1 3.6939 1.1645 -0.5040 46 1 2.2338 -1.6355 1.1568 47 1 2.7319 -2.6363 2.6159 48 1 3.5419 -3.7907 4.6266 49 1 3.9417 -2.5465 6.7084 50 1 3.5388 -0.1297 6.8111 51 1 3.7244 4.0271 6.3614 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601670636.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:43 Heat of formation + Delta-G solvation = -28.214058 kcal Electronic energy + Delta-G solvation = -29477.704975 eV Core-core repulsion = 25761.742845 eV Total energy + Delta-G solvation = -3715.962130 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.59929 -38.74779 -37.10458 -35.61700 -33.80285 -33.38489 -31.15264 -30.83403 -30.37197 -29.22923 -28.29179 -25.37203 -24.99381 -23.34832 -22.58507 -21.91883 -21.25509 -20.07444 -19.70702 -19.35419 -17.48360 -16.64777 -16.05512 -15.71110 -15.23252 -14.75640 -14.65421 -14.45461 -14.15316 -14.01720 -13.92196 -13.74509 -13.57393 -13.11306 -12.90218 -12.65195 -12.50534 -12.41240 -12.33549 -12.01095 -11.88109 -11.84274 -11.66534 -11.45178 -11.32327 -11.19529 -10.88962 -10.79237 -10.65887 -10.63490 -10.36644 -10.32407 -10.10235 -10.08058 -9.76848 -9.16343 -8.38700 -8.26949 -8.21524 -7.74052 -7.50488 -6.85032 -4.40402 2.20069 2.67292 3.13208 3.20834 3.33775 3.77926 4.00139 4.10567 4.13698 4.64521 4.67517 4.73910 4.74838 4.90545 5.20413 5.25138 5.29996 5.36994 5.43260 5.48489 5.51425 5.58331 5.59295 5.61599 5.67075 5.73788 5.79502 5.85133 5.87583 5.91094 6.00396 6.04087 6.07645 6.11058 6.15026 6.20103 6.30473 6.42325 6.45929 6.54030 6.61271 6.87658 7.06449 7.12734 7.16795 7.29508 7.36757 7.48605 7.67896 7.85258 8.09900 8.50479 8.56122 8.73307 8.94850 9.51854 10.11891 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010718 B = 0.004086 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.839707 B = 6850.300338 C = 7416.673950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.150 3.850 3 H 0.084 0.916 4 C 0.049 3.951 5 N -0.529 5.529 6 C 0.057 3.943 7 C -0.111 4.111 8 C -0.093 4.093 9 C -0.146 4.146 10 C -0.112 4.112 11 C 0.055 3.945 12 N -0.726 5.726 13 C 0.564 3.436 14 O -0.535 6.535 15 C -0.245 4.245 16 C -0.039 4.039 17 C -0.256 4.256 18 C -0.066 4.066 19 C -0.229 4.229 20 C 0.117 3.883 21 C -0.403 4.403 22 H 0.124 0.876 23 C 0.081 3.919 24 N -0.795 5.795 25 Si 0.905 3.095 26 H -0.268 1.268 27 H -0.245 1.245 28 H -0.289 1.289 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.041 0.959 34 H 0.072 0.928 35 H 0.027 0.973 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.053 0.947 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.027 0.973 45 H 0.083 0.917 46 H 0.393 0.607 47 H 0.095 0.905 48 H 0.095 0.905 49 H 0.094 0.906 50 H 0.104 0.896 51 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.415 -8.913 -15.144 17.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.043 3.957 3 H 0.101 0.899 4 C -0.080 4.080 5 N -0.254 5.254 6 C -0.071 4.071 7 C -0.148 4.148 8 C -0.111 4.111 9 C -0.203 4.203 10 C -0.150 4.150 11 C -0.072 4.072 12 N -0.380 5.380 13 C 0.357 3.643 14 O -0.413 6.413 15 C -0.249 4.249 16 C -0.058 4.058 17 C -0.276 4.276 18 C -0.085 4.085 19 C -0.248 4.248 20 C 0.113 3.887 21 C -0.430 4.430 22 H 0.141 0.859 23 C -0.139 4.139 24 N -0.418 5.418 25 Si 0.731 3.269 26 H -0.194 1.194 27 H -0.168 1.168 28 H -0.216 1.216 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.059 0.941 34 H 0.090 0.910 35 H 0.046 0.954 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.094 0.906 44 H 0.045 0.955 45 H 0.101 0.899 46 H 0.227 0.773 47 H 0.113 0.887 48 H 0.113 0.887 49 H 0.112 0.888 50 H 0.122 0.878 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.357 -7.944 -14.577 16.938 hybrid contribution 0.630 -0.322 -0.457 0.842 sum 3.987 -8.266 -15.034 17.614 Atomic orbital electron populations 1.22161 0.95858 1.01691 1.02306 1.20718 0.93014 0.97576 0.84342 0.89852 1.22425 0.87775 1.00922 0.96831 1.61839 1.05028 1.11816 1.46678 1.22065 0.95877 0.97000 0.92125 1.21635 0.93982 0.96788 1.02439 1.21175 0.95079 0.96049 0.98818 1.21810 0.95327 1.01445 1.01748 1.21639 0.94263 0.99321 0.99749 1.22125 0.95175 0.89979 0.99964 1.45774 1.69919 1.13077 1.09203 1.18291 0.77063 0.86432 0.82551 1.90708 1.50689 1.15437 1.84470 1.19462 1.18141 0.93564 0.93779 1.20781 0.95254 0.93396 0.96337 1.20273 1.14598 0.98107 0.94578 1.20731 0.96955 0.94296 0.96476 1.21183 1.11371 0.94148 0.98129 1.17557 0.88262 0.93767 0.89137 1.20149 1.11765 0.90480 1.20614 0.85885 1.26346 1.00466 0.94716 0.92376 1.69593 1.36806 1.07640 1.27797 0.86422 0.80996 0.79063 0.80414 1.19384 1.16831 1.21609 0.92819 0.91499 0.92569 0.90522 0.94066 0.90971 0.95442 0.91962 0.90830 0.91981 0.92408 0.93029 0.92830 0.91753 0.90644 0.95482 0.89898 0.77269 0.88672 0.88721 0.88758 0.87813 0.90405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 9.50 37.16 0.35 -1.82 16 2 C 0.15 2.20 2.38 -67.93 -0.16 2.03 16 3 H 0.08 1.43 6.01 -51.93 -0.31 1.12 16 4 C 0.05 0.56 4.52 -3.83 -0.02 0.54 16 5 N -0.53 -6.42 4.40 -234.67 -1.03 -7.46 16 6 C 0.06 0.57 5.46 -3.83 -0.02 0.55 16 7 C -0.11 -1.08 5.38 -26.65 -0.14 -1.22 16 8 C -0.09 -0.94 2.79 -90.49 -0.25 -1.19 16 9 C -0.15 -1.36 9.21 37.16 0.34 -1.02 16 10 C -0.11 -1.38 5.38 -26.65 -0.14 -1.52 16 11 C 0.06 0.71 5.29 -3.83 -0.02 0.69 16 12 N -0.73 -12.46 4.76 -54.88 -0.26 -12.72 16 13 C 0.56 12.72 7.70 -12.52 -0.10 12.62 16 14 O -0.53 -14.05 13.18 5.27 0.07 -13.98 16 15 C -0.24 -5.78 5.92 -104.36 -0.62 -6.40 16 16 C -0.04 -0.79 9.53 -39.22 -0.37 -1.16 16 17 C -0.26 -5.13 10.03 -39.37 -0.39 -5.53 16 18 C -0.07 -1.40 10.01 -39.60 -0.40 -1.80 16 19 C -0.23 -5.51 7.20 -38.89 -0.28 -5.79 16 20 C 0.12 3.06 4.99 -106.54 -0.53 2.52 16 21 C -0.40 -11.42 8.28 -37.81 -0.31 -11.73 16 22 H 0.12 3.85 5.98 -52.49 -0.31 3.54 16 23 C 0.08 2.19 5.44 -17.30 -0.09 2.10 16 24 N -0.79 -21.81 13.92 55.56 0.77 -21.03 16 25 Si 0.91 21.13 24.63 -169.99 -4.19 16.95 16 26 H -0.27 -5.96 6.68 56.52 0.38 -5.59 16 27 H -0.25 -5.90 6.99 56.52 0.40 -5.50 16 28 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.78 7.99 -51.93 -0.42 0.37 16 33 H 0.04 0.43 8.13 -51.93 -0.42 0.01 16 34 H 0.07 0.66 8.02 -51.93 -0.42 0.24 16 35 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.08 1.29 6.28 -51.93 -0.33 0.96 16 46 H 0.39 6.05 6.66 -40.82 -0.27 5.78 16 47 H 0.10 1.60 6.41 -52.49 -0.34 1.27 16 48 H 0.09 1.63 8.06 -52.49 -0.42 1.20 16 49 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 50 H 0.10 2.47 5.22 -52.49 -0.27 2.20 16 51 H 0.29 7.05 8.29 -40.82 -0.34 6.71 16 LS Contribution 391.61 15.07 5.90 5.90 Total: -1.00 -29.73 391.61 -10.49 -40.23 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -8.59 Total: 10.22 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -3.16 Total: -18.10 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: -0.52 Total: -41.21 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: 0.07 Total: -13.98 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.19 Total: 16.95 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.73 -10.49 -40.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601670636.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.011 kcal (2) G-P(sol) polarization free energy of solvation -29.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds