Wall clock time and date at job start Tue Mar 31 2020 16:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47372 * 2 1 4 4 C 1.52992 * 109.47358 * 239.99603 * 2 1 3 5 5 N 1.46902 * 109.47430 * 184.11674 * 4 2 1 6 6 C 1.46852 * 111.00321 * 170.28370 * 5 4 2 7 7 C 1.53033 * 109.52225 * 185.83869 * 6 5 4 8 8 C 1.53125 * 109.27637 * 300.81247 * 7 6 5 9 9 C 1.53004 * 109.56999 * 177.59244 * 8 7 6 10 10 C 1.53123 * 109.15643 * 57.65885 * 8 7 6 11 11 C 1.46852 * 110.99412 * 294.48876 * 5 4 2 12 12 N 1.46507 * 109.46932 * 119.99909 * 2 1 3 13 13 C 1.34772 * 119.99938 * 273.90090 * 12 2 1 14 14 O 1.21610 * 120.00307 * 0.02562 * 13 12 2 15 15 C 1.47435 * 120.00074 * 180.02562 * 13 12 2 16 16 C 1.39228 * 120.28228 * 356.56828 * 15 13 12 17 17 C 1.38220 * 120.08741 * 180.28126 * 16 15 13 18 18 C 1.38820 * 120.67975 * 359.69510 * 17 16 15 19 19 C 1.37593 * 120.57347 * 359.97438 * 18 17 16 20 20 C 1.40706 * 119.87956 * 0.02781 * 19 18 17 21 21 C 1.40892 * 120.33203 * 179.97438 * 20 19 18 22 22 H 1.07992 * 120.00484 * 216.36103 * 21 20 19 23 23 C 1.40275 * 119.99552 * 36.36140 * 21 20 19 24 24 N 1.30624 * 119.99770 * 193.97952 * 23 21 20 25 25 Si 1.86796 * 120.00075 * 13.97299 * 23 21 20 26 26 H 1.48506 * 109.47569 * 268.43681 * 25 23 21 27 27 H 1.48496 * 109.47330 * 28.44281 * 25 23 21 28 28 H 1.48503 * 109.47259 * 148.43918 * 25 23 21 29 29 H 1.09000 * 109.47372 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47229 * 300.00150 * 1 2 3 31 31 H 1.09001 * 109.47214 * 60.00020 * 1 2 3 32 32 H 1.09001 * 109.47361 * 304.11820 * 4 2 1 33 33 H 1.08997 * 109.47092 * 64.11320 * 4 2 1 34 34 H 1.09002 * 109.45462 * 305.85297 * 6 5 4 35 35 H 1.09000 * 109.46203 * 65.81689 * 6 5 4 36 36 H 1.09000 * 109.50325 * 180.87942 * 7 6 5 37 37 H 1.08999 * 109.50668 * 60.75596 * 7 6 5 38 38 H 1.08996 * 109.52491 * 297.75179 * 8 7 6 39 39 H 1.09000 * 109.47247 * 300.28658 * 9 8 7 40 40 H 1.08996 * 109.47145 * 60.29133 * 9 8 7 41 41 H 1.09008 * 109.46585 * 180.28890 * 9 8 7 42 42 H 1.09003 * 109.50065 * 182.40008 * 10 8 7 43 43 H 1.09002 * 109.50094 * 62.28746 * 10 8 7 44 44 H 1.09004 * 109.46540 * 294.17262 * 11 5 4 45 45 H 1.08993 * 109.46317 * 54.15724 * 11 5 4 46 46 H 0.96999 * 120.00382 * 93.90091 * 12 2 1 47 47 H 1.07996 * 119.95279 * 359.97438 * 16 15 13 48 48 H 1.08002 * 119.65613 * 179.71938 * 17 16 15 49 49 H 1.08003 * 119.71265 * 180.02562 * 18 17 16 50 50 H 1.08001 * 120.06299 * 180.02562 * 19 18 17 51 51 H 0.97004 * 119.99902 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5057 -0.8080 -1.2004 6 6 4.0162 -1.6892 -2.2584 7 6 5.5261 -1.8710 -2.0882 8 6 6.2115 -0.5037 -2.1622 9 6 7.7149 -0.6709 -1.9329 10 6 5.6275 0.4102 -1.0813 11 6 4.1146 0.5259 -1.2806 12 7 2.0183 -0.6906 1.1963 13 6 2.1680 -0.0130 2.3516 14 8 1.8974 1.1715 2.4013 15 6 2.6600 -0.7079 3.5553 16 6 2.9038 -2.0783 3.5245 17 6 3.3594 -2.7267 4.6570 18 6 3.5852 -2.0242 5.8328 19 6 3.3599 -0.6681 5.8922 20 6 2.8960 0.0159 4.7534 21 6 2.6616 1.4042 4.8037 22 1 1.8339 1.8323 4.2579 23 6 3.5034 2.2305 5.5629 24 7 3.1425 3.4558 5.8361 25 14 5.1403 1.5786 6.1831 26 1 4.9600 0.9951 7.5368 27 1 5.6399 0.5322 5.2555 28 1 6.1225 2.6904 6.2503 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6177 -1.7255 -1.2868 33 1 1.7381 -0.1667 -2.1376 34 1 3.5238 -2.6594 -2.1919 35 1 3.8114 -1.2441 -3.2321 36 1 5.9073 -2.5125 -2.8827 37 1 5.7308 -2.3287 -1.1204 38 1 6.0395 -0.0627 -3.1440 39 1 7.8858 -1.1140 -0.9518 40 1 8.1297 -1.3216 -2.7028 41 1 8.2004 0.3040 -1.9809 42 1 6.0811 1.3986 -1.1564 43 1 5.8338 -0.0116 -0.0977 44 1 3.9094 0.9606 -2.2590 45 1 3.6939 1.1645 -0.5040 46 1 2.2338 -1.6355 1.1568 47 1 2.7319 -2.6363 2.6159 48 1 3.5419 -3.7907 4.6266 49 1 3.9417 -2.5465 6.7084 50 1 3.5388 -0.1297 6.8111 51 1 3.7244 4.0271 6.3614 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601670636.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:42 Heat of formation + Delta-G solvation = -47.239455 kcal Electronic energy + Delta-G solvation = -29478.529978 eV Core-core repulsion = 25761.742845 eV Total energy + Delta-G solvation = -3716.787133 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.96084 -40.07142 -38.75674 -36.94519 -35.55793 -34.72630 -32.67339 -32.23535 -31.75852 -30.76992 -29.21335 -27.20349 -26.03312 -24.41273 -24.10710 -23.14883 -22.69412 -21.42448 -21.09301 -20.53214 -19.38688 -18.30117 -17.24480 -17.09992 -16.83001 -15.97660 -15.77999 -15.75536 -15.55656 -15.38834 -15.32370 -15.18917 -14.88466 -14.46871 -14.26178 -14.18313 -13.94892 -13.77232 -13.45685 -13.29616 -13.17165 -12.99566 -12.73322 -12.67880 -12.64185 -12.51819 -12.43903 -12.16218 -12.11183 -12.01340 -11.82492 -11.61623 -11.53345 -11.14672 -11.06133 -11.02919 -10.22827 -9.82515 -9.46686 -9.36029 -9.20325 -8.81150 -6.43932 0.40483 0.86449 1.22543 1.35883 1.45337 2.10469 2.35265 2.55313 2.75305 2.95396 3.59150 3.73720 3.85793 3.88474 3.96210 4.22012 4.26800 4.30307 4.33476 4.39066 4.41180 4.49924 4.51485 4.58734 4.65449 4.71757 4.74263 4.77316 4.79199 4.82417 4.86813 4.88034 4.95883 5.01967 5.05281 5.14664 5.16508 5.24240 5.27181 5.31369 5.33055 5.34262 5.52154 5.55983 5.72989 5.81601 5.92386 6.01730 6.15149 6.24979 6.31665 6.51839 6.75126 6.83888 7.05905 7.79971 8.23380 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010718 B = 0.004086 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.839707 B = 6850.300338 C = 7416.673950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.146 3.854 3 H 0.048 0.952 4 C 0.059 3.941 5 N -0.544 5.544 6 C 0.058 3.942 7 C -0.108 4.108 8 C -0.088 4.088 9 C -0.144 4.144 10 C -0.111 4.111 11 C 0.060 3.940 12 N -0.702 5.702 13 C 0.557 3.443 14 O -0.584 6.584 15 C -0.262 4.262 16 C -0.037 4.037 17 C -0.231 4.231 18 C -0.063 4.063 19 C -0.250 4.250 20 C 0.100 3.900 21 C -0.451 4.451 22 H 0.072 0.928 23 C 0.039 3.961 24 N -0.849 5.849 25 Si 0.964 3.036 26 H -0.246 1.246 27 H -0.257 1.257 28 H -0.278 1.278 29 H 0.077 0.923 30 H 0.026 0.974 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.059 0.941 34 H 0.090 0.910 35 H 0.038 0.962 36 H 0.085 0.915 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.046 0.954 40 H 0.068 0.932 41 H 0.052 0.948 42 H 0.061 0.939 43 H 0.047 0.953 44 H 0.039 0.961 45 H 0.043 0.957 46 H 0.406 0.594 47 H 0.138 0.862 48 H 0.143 0.857 49 H 0.134 0.866 50 H 0.100 0.900 51 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.710 -14.099 -17.169 22.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.040 3.960 3 H 0.066 0.934 4 C -0.069 4.069 5 N -0.269 5.269 6 C -0.069 4.069 7 C -0.146 4.146 8 C -0.106 4.106 9 C -0.201 4.201 10 C -0.149 4.149 11 C -0.068 4.068 12 N -0.355 5.355 13 C 0.349 3.651 14 O -0.466 6.466 15 C -0.266 4.266 16 C -0.056 4.056 17 C -0.250 4.250 18 C -0.082 4.082 19 C -0.269 4.269 20 C 0.096 3.904 21 C -0.479 4.479 22 H 0.090 0.910 23 C -0.174 4.174 24 N -0.476 5.476 25 Si 0.786 3.214 26 H -0.171 1.171 27 H -0.181 1.181 28 H -0.205 1.205 29 H 0.096 0.904 30 H 0.045 0.955 31 H 0.100 0.900 32 H 0.122 0.878 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.056 0.944 36 H 0.103 0.897 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.065 0.935 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.243 0.757 47 H 0.155 0.845 48 H 0.160 0.840 49 H 0.152 0.848 50 H 0.118 0.882 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.643 -13.184 -16.633 21.726 hybrid contribution 0.152 0.996 0.003 1.008 sum 4.794 -12.188 -16.630 21.168 Atomic orbital electron populations 1.22079 0.94596 1.02950 1.01623 1.20899 0.93972 0.96242 0.84869 0.93387 1.22351 0.87527 1.02008 0.94993 1.61814 1.05371 1.11363 1.48337 1.22149 0.95953 0.97152 0.91668 1.21632 0.93979 0.96450 1.02500 1.21147 0.95474 0.95945 0.98043 1.21791 0.94838 1.01749 1.01750 1.21611 0.94203 0.99752 0.99338 1.21974 0.95345 0.90375 0.99129 1.45538 1.68197 1.13371 1.08418 1.18434 0.76799 0.85959 0.83941 1.90712 1.52791 1.17711 1.85338 1.19893 1.17713 0.95436 0.93594 1.21205 0.93987 0.91836 0.98561 1.20921 1.10526 1.00318 0.93258 1.21229 0.95308 0.93023 0.98592 1.21274 1.12555 0.95763 0.97313 1.17817 0.88618 0.93123 0.90845 1.19894 1.12762 0.92281 1.23010 0.91044 1.27032 1.03196 0.94752 0.92454 1.69644 1.38499 1.08982 1.30474 0.85543 0.77080 0.78382 0.80396 1.17101 1.18057 1.20487 0.90435 0.95491 0.90011 0.87789 0.92330 0.89188 0.94386 0.89659 0.92261 0.90975 0.93460 0.91258 0.92935 0.92080 0.93427 0.94270 0.93798 0.75731 0.84486 0.83951 0.84770 0.88223 0.89772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.05 9.50 71.98 0.68 -3.37 16 2 C 0.15 4.27 2.38 44.99 0.11 4.38 16 3 H 0.05 1.78 6.01 -2.39 -0.01 1.77 16 4 C 0.06 1.20 4.52 86.30 0.39 1.59 16 5 N -0.54 -12.12 4.40 -896.36 -3.95 -16.07 16 6 C 0.06 0.94 5.46 86.32 0.47 1.41 16 7 C -0.11 -1.77 5.38 30.65 0.16 -1.60 16 8 C -0.09 -1.61 2.79 -10.71 -0.03 -1.64 16 9 C -0.14 -2.43 9.21 71.98 0.66 -1.77 16 10 C -0.11 -2.77 5.38 30.65 0.16 -2.60 16 11 C 0.06 1.56 5.29 86.32 0.46 2.01 16 12 N -0.70 -23.96 4.76 -445.80 -2.12 -26.08 16 13 C 0.56 26.30 7.70 86.67 0.67 26.97 16 14 O -0.58 -33.70 13.18 -4.06 -0.05 -33.76 16 15 C -0.26 -12.47 5.92 -19.70 -0.12 -12.59 16 16 C -0.04 -1.38 9.53 22.50 0.21 -1.17 16 17 C -0.23 -8.01 10.03 22.40 0.22 -7.78 16 18 C -0.06 -2.43 10.01 22.26 0.22 -2.21 16 19 C -0.25 -11.87 7.20 22.72 0.16 -11.71 16 20 C 0.10 5.39 4.99 -21.11 -0.11 5.29 16 21 C -0.45 -27.79 8.28 23.42 0.19 -27.60 16 22 H 0.07 5.03 5.98 -2.91 -0.02 5.01 16 23 C 0.04 2.29 5.44 85.37 0.46 2.76 16 24 N -0.85 -50.64 13.92 21.88 0.30 -50.34 16 25 Si 0.96 45.32 24.63 68.60 1.69 47.01 16 26 H -0.25 -10.57 6.68 99.48 0.66 -9.90 16 27 H -0.26 -12.32 6.99 99.48 0.70 -11.62 16 28 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 29 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.10 1.61 7.99 -2.39 -0.02 1.59 16 33 H 0.06 1.04 8.13 -2.39 -0.02 1.02 16 34 H 0.09 1.19 8.02 -2.39 -0.02 1.17 16 35 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.14 16 38 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 42 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 45 H 0.04 1.48 6.28 -2.39 -0.02 1.46 16 46 H 0.41 11.46 6.66 -92.71 -0.62 10.84 16 47 H 0.14 3.90 6.41 -2.91 -0.02 3.88 16 48 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 49 H 0.13 4.12 8.06 -2.91 -0.02 4.10 16 50 H 0.10 4.74 5.22 -2.91 -0.02 4.73 16 51 H 0.29 15.56 8.29 -92.71 -0.77 14.79 16 Total: -1.00 -74.53 391.61 1.11 -73.42 By element: Atomic # 1 Polarization: 35.21 SS G_CDS: 0.24 Total: 35.45 kcal Atomic # 6 Polarization: -34.63 SS G_CDS: 5.00 Total: -29.63 kcal Atomic # 7 Polarization: -86.72 SS G_CDS: -5.76 Total: -92.49 kcal Atomic # 8 Polarization: -33.70 SS G_CDS: -0.05 Total: -33.76 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.69 Total: 47.01 kcal Total: -74.53 1.11 -73.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601670636.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.180 kcal (2) G-P(sol) polarization free energy of solvation -74.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds