Wall clock time and date at job start Tue Mar 31 2020 16:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.47463 * 2 1 4 4 C 1.38235 * 120.00255 * 89.99615 * 3 2 1 5 5 C 1.38234 * 120.00220 * 179.97438 * 4 3 2 6 6 C 1.38233 * 120.00037 * 0.28719 * 5 4 3 7 7 C 1.50693 * 120.00207 * 179.72405 * 6 5 4 8 8 C 1.52997 * 109.47229 * 89.99423 * 7 6 5 9 9 C 1.50707 * 109.47230 * 180.02562 * 8 7 6 10 10 O 1.21281 * 119.99923 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99810 * 180.02562 * 9 8 7 12 12 C 1.47079 * 120.88592 * 359.71992 * 11 9 8 13 13 C 1.53689 * 108.27703 * 128.75320 * 12 11 9 14 14 N 1.46901 * 109.25642 * 54.08906 * 13 12 11 15 15 C 1.46895 * 111.00185 * 172.60780 * 14 13 12 16 16 C 1.50707 * 109.46955 * 294.29392 * 15 14 13 17 17 H 1.07997 * 119.99524 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00069 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00071 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99843 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.46897 * 90.00191 * 20 18 16 22 22 H 1.48500 * 109.47044 * 209.99712 * 20 18 16 23 23 H 1.48495 * 109.47369 * 329.99946 * 20 18 16 24 24 C 1.46909 * 111.26630 * 296.75489 * 14 13 12 25 25 C 1.47083 * 120.87653 * 180.02562 * 11 9 8 26 26 C 1.38238 * 119.99742 * 359.52139 * 6 5 4 27 27 C 1.38234 * 120.00095 * 0.43554 * 26 6 5 28 28 H 1.09001 * 109.46667 * 300.00029 * 1 2 3 29 29 H 1.08999 * 109.46921 * 59.99679 * 1 2 3 30 30 H 1.09005 * 109.47241 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47105 * 239.99814 * 2 1 3 32 32 H 1.09002 * 109.47647 * 119.99760 * 2 1 3 33 33 H 1.07999 * 119.99770 * 0.02562 * 4 3 2 34 34 H 1.08002 * 119.99744 * 180.02562 * 5 4 3 35 35 H 1.09000 * 109.47097 * 209.99342 * 7 6 5 36 36 H 1.09001 * 109.47081 * 329.99847 * 7 6 5 37 37 H 1.09004 * 109.47454 * 300.00132 * 8 7 6 38 38 H 1.09006 * 109.47180 * 60.00059 * 8 7 6 39 39 H 1.08996 * 109.62708 * 248.53099 * 12 11 9 40 40 H 1.09003 * 109.62213 * 9.10294 * 12 11 9 41 41 H 1.08992 * 109.65123 * 294.08284 * 13 12 11 42 42 H 1.09000 * 109.41725 * 173.94635 * 13 12 11 43 43 H 1.08991 * 109.47499 * 54.29721 * 15 14 13 44 44 H 1.08998 * 109.47101 * 174.30066 * 15 14 13 45 45 H 0.96998 * 119.99979 * 180.02562 * 19 18 16 46 46 H 1.09001 * 109.48662 * 303.14225 * 24 14 13 47 47 H 1.08994 * 109.49333 * 183.06562 * 24 14 13 48 48 H 1.08998 * 109.62809 * 350.89458 * 25 11 9 49 49 H 1.08997 * 109.62770 * 111.47770 * 25 11 9 50 50 H 1.08003 * 120.00354 * 180.21032 * 26 6 5 51 51 H 1.08001 * 120.00324 * 179.78922 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0725 1.1971 5 6 2.7241 3.3756 1.1971 6 6 2.9495 4.0290 0.0000 7 6 3.4465 5.4516 0.0000 8 6 4.9765 5.4573 -0.0032 9 6 5.4735 6.8801 -0.0026 10 8 4.6820 7.7990 -0.0004 11 7 6.7977 7.1312 -0.0057 12 6 7.7747 6.0318 -0.0034 13 6 8.7759 6.2744 -1.1439 14 7 9.3533 7.6179 -1.0041 15 6 10.4416 7.8261 -1.9686 16 6 11.5855 6.9006 -1.6427 17 1 11.5112 6.2251 -0.8033 18 6 12.7264 6.9157 -2.4166 19 7 13.7245 6.1077 -2.1325 20 14 12.8546 8.0837 -3.8688 21 1 13.4423 9.3708 -3.4183 22 1 13.7222 7.4819 -4.9130 23 1 11.5012 8.3268 -4.4295 24 6 8.3238 8.6571 -1.1396 25 6 7.3040 8.5122 -0.0046 26 6 2.7229 3.3760 -1.1972 27 6 2.2624 2.0726 -1.1972 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.0831 1.5633 2.1324 34 1 2.9045 3.8845 2.1325 35 1 3.0794 5.9647 -0.8889 36 1 3.0832 5.9634 0.8911 37 1 5.3436 4.9442 0.8856 38 1 5.3399 4.9455 -0.8944 39 1 8.3003 6.0111 0.9513 40 1 7.2598 5.0842 -0.1617 41 1 8.2645 6.1963 -2.1033 42 1 9.5704 5.5300 -1.0931 43 1 10.0801 7.6165 -2.9752 44 1 10.7834 8.8596 -1.9131 45 1 14.5273 6.1185 -2.6768 46 1 7.8188 8.5458 -2.0991 47 1 8.7905 9.6406 -1.0858 48 1 6.4779 9.2052 -0.1637 49 1 7.7855 8.7248 0.9499 50 1 2.9022 3.8853 -2.1325 51 1 2.0821 1.5635 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602207843.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:50 Heat of formation + Delta-G solvation = -37.073721 kcal Electronic energy + Delta-G solvation = -27473.549841 eV Core-core repulsion = 23757.203527 eV Total energy + Delta-G solvation = -3716.346314 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.30833 -40.35969 -39.04310 -36.08286 -35.95222 -34.44665 -33.50849 -32.13433 -31.77482 -30.58867 -29.66686 -27.43753 -25.84023 -24.64351 -23.71046 -23.59243 -23.09239 -21.87706 -21.21984 -19.80919 -18.94498 -18.33883 -17.02933 -16.95711 -16.84386 -16.53081 -16.30003 -16.05270 -15.93201 -15.69651 -15.19715 -14.92828 -14.84585 -14.49824 -14.46366 -14.40565 -14.17048 -14.04954 -13.77568 -13.56520 -13.25380 -13.13933 -12.89295 -12.68116 -12.54616 -12.41520 -12.30968 -12.23145 -12.21328 -11.94077 -11.87462 -11.85029 -11.63745 -11.59696 -11.42057 -10.84226 -10.77909 -9.78512 -9.77223 -9.37384 -9.07347 -8.28118 -6.31044 0.43383 0.54471 1.34831 1.35941 1.45635 1.58977 1.96969 2.33764 2.85950 3.04262 3.14379 3.44361 3.88923 3.90111 3.94949 4.01341 4.07401 4.12585 4.17294 4.20565 4.24594 4.30005 4.36440 4.41100 4.50538 4.53745 4.63622 4.66744 4.67316 4.72817 4.74202 4.80367 4.86564 4.92330 4.95237 5.03994 5.08571 5.10691 5.10866 5.12278 5.24829 5.27373 5.39902 5.44328 5.52257 5.56966 5.76701 5.77865 5.92252 6.16671 6.28184 6.40984 6.59684 6.75136 7.11664 7.32547 8.87734 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016090 B = 0.002121 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.838817 B =13196.944078 C =14282.698244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.094 4.094 4 C -0.124 4.124 5 C -0.120 4.120 6 C -0.094 4.094 7 C -0.055 4.055 8 C -0.126 4.126 9 C 0.513 3.487 10 O -0.584 6.584 11 N -0.613 5.613 12 C 0.120 3.880 13 C 0.049 3.951 14 N -0.539 5.539 15 C 0.171 3.829 16 C -0.513 4.513 17 H 0.046 0.954 18 C 0.011 3.989 19 N -0.944 5.944 20 Si 0.942 3.058 21 H -0.266 1.266 22 H -0.283 1.283 23 H -0.256 1.256 24 C 0.042 3.958 25 C 0.123 3.877 26 C -0.123 4.123 27 C -0.126 4.126 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.114 0.886 38 H 0.106 0.894 39 H 0.081 0.919 40 H 0.116 0.884 41 H 0.024 0.976 42 H 0.078 0.922 43 H -0.015 1.015 44 H 0.029 0.971 45 H 0.267 0.733 46 H 0.023 0.977 47 H 0.090 0.910 48 H 0.091 0.909 49 H 0.079 0.921 50 H 0.127 0.873 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.041 -9.028 4.747 27.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.122 4.122 3 C -0.094 4.094 4 C -0.142 4.142 5 C -0.138 4.138 6 C -0.094 4.094 7 C -0.093 4.093 8 C -0.166 4.166 9 C 0.303 3.697 10 O -0.465 6.465 11 N -0.346 5.346 12 C -0.002 4.002 13 C -0.080 4.080 14 N -0.264 5.264 15 C 0.044 3.956 16 C -0.551 4.551 17 H 0.065 0.935 18 C -0.187 4.187 19 N -0.585 5.585 20 Si 0.766 3.234 21 H -0.191 1.191 22 H -0.209 1.209 23 H -0.180 1.180 24 C -0.087 4.087 25 C 0.000 4.000 26 C -0.141 4.141 27 C -0.144 4.144 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.153 0.847 34 H 0.150 0.850 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.132 0.868 38 H 0.125 0.875 39 H 0.099 0.901 40 H 0.134 0.866 41 H 0.043 0.957 42 H 0.096 0.904 43 H 0.002 0.998 44 H 0.047 0.953 45 H 0.076 0.924 46 H 0.041 0.959 47 H 0.108 0.892 48 H 0.109 0.891 49 H 0.097 0.903 50 H 0.145 0.855 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -26.084 -8.560 5.162 27.934 hybrid contribution 0.573 0.523 -1.561 1.743 sum -25.512 -8.038 3.601 26.989 Atomic orbital electron populations 1.21733 0.94339 1.02313 1.01820 1.20586 0.96448 0.91690 1.03510 1.20182 0.98888 0.97140 0.93161 1.21254 0.99780 0.94866 0.98284 1.21247 0.99516 0.95150 0.97902 1.19874 1.00217 0.95646 0.93689 1.20200 0.93125 0.92464 1.03522 1.21696 0.96783 0.91970 1.06102 1.21231 0.81172 0.92621 0.74628 1.90651 1.55241 1.48229 1.52354 1.48359 1.05827 1.07980 1.72401 1.22068 0.89187 0.89872 0.99080 1.22441 0.97005 0.91876 0.96651 1.61813 1.09675 1.02473 1.52416 1.19943 0.89793 0.96503 0.89359 1.21215 0.99500 1.20788 1.13627 0.93550 1.25765 0.95223 0.97268 1.00416 1.70029 1.06831 1.40115 1.41503 0.85790 0.78896 0.79416 0.79262 1.19128 1.20854 1.17957 1.22504 0.92678 0.96679 0.96852 1.21634 0.96219 0.83322 0.98832 1.21235 0.99740 0.95235 0.97938 1.21237 0.99932 0.94849 0.98341 0.92894 0.93052 0.91266 0.90529 0.90315 0.84699 0.85028 0.91403 0.90889 0.86804 0.87542 0.90081 0.86559 0.95741 0.90358 0.99779 0.95269 0.92446 0.95876 0.89203 0.89085 0.90319 0.85548 0.85013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.89 71.98 0.71 -0.70 16 2 C -0.09 -0.92 6.06 29.85 0.18 -0.74 16 3 C -0.09 -1.40 5.13 -19.87 -0.10 -1.50 16 4 C -0.12 -1.87 9.70 22.27 0.22 -1.65 16 5 C -0.12 -1.96 9.70 22.27 0.22 -1.74 16 6 C -0.09 -1.67 5.13 -19.87 -0.10 -1.78 16 7 C -0.06 -1.06 4.63 29.84 0.14 -0.92 16 8 C -0.13 -2.36 4.05 29.85 0.12 -2.24 16 9 C 0.51 13.51 7.71 87.66 0.68 14.19 16 10 O -0.58 -19.20 15.43 -3.03 -0.05 -19.25 16 11 N -0.61 -16.56 3.00 -816.98 -2.45 -19.01 16 12 C 0.12 3.08 6.53 86.50 0.57 3.64 16 13 C 0.05 1.70 5.47 86.53 0.47 2.17 16 14 N -0.54 -21.05 4.62 -898.82 -4.15 -25.20 16 15 C 0.17 7.92 3.79 85.56 0.32 8.25 16 16 C -0.51 -28.44 8.96 25.60 0.23 -28.21 16 17 H 0.05 2.83 7.37 -2.91 -0.02 2.81 16 18 C 0.01 0.62 5.47 84.65 0.46 1.09 16 19 N -0.94 -57.43 13.96 21.45 0.30 -57.13 16 20 Si 0.94 43.19 27.47 68.60 1.88 45.08 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 23 H -0.26 -11.07 6.54 99.48 0.65 -10.42 16 24 C 0.04 1.35 5.62 86.39 0.49 1.83 16 25 C 0.12 3.49 6.60 86.36 0.57 4.06 16 26 C -0.12 -2.14 9.70 22.27 0.22 -1.92 16 27 C -0.13 -1.99 9.70 22.27 0.22 -1.78 16 28 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.05 0.54 8.14 -2.39 -0.02 0.53 16 30 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.08 0.75 8.09 -2.38 -0.02 0.73 16 32 H 0.08 0.73 8.09 -2.39 -0.02 0.71 16 33 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 34 H 0.13 1.79 8.06 -2.91 -0.02 1.77 16 35 H 0.07 1.44 8.04 -2.39 -0.02 1.42 16 36 H 0.07 1.48 8.04 -2.39 -0.02 1.46 16 37 H 0.11 1.73 7.99 -2.38 -0.02 1.71 16 38 H 0.11 1.79 7.67 -2.38 -0.02 1.77 16 39 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.12 2.19 6.02 -2.39 -0.01 2.18 16 41 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.08 3.09 6.67 -2.39 -0.02 3.07 16 43 H -0.02 -0.73 7.18 -2.39 -0.02 -0.74 16 44 H 0.03 1.33 7.40 -2.39 -0.02 1.32 16 45 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 46 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.09 2.72 7.99 -2.39 -0.02 2.70 16 48 H 0.09 2.58 7.06 -2.39 -0.02 2.56 16 49 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 50 H 0.13 1.96 8.06 -2.91 -0.02 1.94 16 51 H 0.13 1.66 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -68.71 404.24 1.96 -66.75 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.83 Total: 16.71 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: 5.60 Total: -7.96 kcal Atomic # 7 Polarization: -95.03 SS G_CDS: -6.31 Total: -101.34 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.05 Total: -19.25 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 1.88 Total: 45.08 kcal Total: -68.71 1.96 -66.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602207843.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.681 kcal (2) G-P(sol) polarization free energy of solvation -68.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds