Wall clock time and date at job start Tue Mar 31 2020 16:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.46821 * 2 1 4 4 C 1.38241 * 120.00270 * 269.72384 * 3 2 1 5 5 C 1.38235 * 120.00257 * 179.74795 * 4 3 2 6 6 C 1.38239 * 119.99409 * 0.52629 * 5 4 3 7 7 C 1.50707 * 119.99401 * 179.77000 * 6 5 4 8 8 H 1.08999 * 109.46622 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47034 * 299.97822 * 7 6 5 10 10 C 1.50699 * 109.47055 * 59.97942 * 7 6 5 11 11 O 1.21278 * 120.00449 * 260.99777 * 10 7 6 12 12 N 1.34777 * 119.99867 * 81.00525 * 10 7 6 13 13 C 1.47085 * 120.88093 * 4.55002 * 12 10 7 14 14 C 1.53699 * 108.27691 * 128.75746 * 13 12 10 15 15 N 1.46898 * 109.25751 * 54.08132 * 14 13 12 16 16 C 1.46896 * 111.00227 * 172.60767 * 15 14 13 17 17 C 1.50701 * 109.46886 * 59.48484 * 16 15 14 18 18 H 1.07999 * 120.00169 * 5.26219 * 17 16 15 19 19 C 1.37874 * 120.00021 * 185.26625 * 17 16 15 20 20 N 1.31518 * 120.00098 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00288 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47144 * 89.99371 * 21 19 17 23 23 H 1.48504 * 109.47212 * 209.99648 * 21 19 17 24 24 H 1.48500 * 109.46878 * 329.99419 * 21 19 17 25 25 C 1.46901 * 111.26936 * 296.75879 * 15 14 13 26 26 C 1.47081 * 120.88317 * 184.82884 * 12 10 7 27 27 C 1.38231 * 120.00261 * 359.75015 * 6 5 4 28 28 C 1.38233 * 120.00264 * 359.97438 * 27 6 5 29 29 H 1.08992 * 109.47302 * 299.99877 * 1 2 3 30 30 H 1.09000 * 109.46892 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46968 * 59.99868 * 1 2 3 32 32 H 1.08997 * 109.46968 * 120.00132 * 2 1 3 33 33 H 1.09002 * 109.47400 * 240.00126 * 2 1 3 34 34 H 1.08005 * 119.99391 * 0.02562 * 4 3 2 35 35 H 1.07999 * 120.00123 * 180.29838 * 5 4 3 36 36 H 1.08997 * 109.47447 * 295.40042 * 9 7 6 37 37 H 1.09001 * 109.46826 * 55.40225 * 9 7 6 38 38 H 1.09002 * 109.46608 * 175.39960 * 9 7 6 39 39 H 1.09001 * 109.62641 * 248.52401 * 13 12 10 40 40 H 1.08996 * 109.62789 * 9.10312 * 13 12 10 41 41 H 1.09002 * 109.64371 * 294.08103 * 14 13 12 42 42 H 1.08997 * 109.41616 * 173.94654 * 14 13 12 43 43 H 1.08995 * 109.47225 * 179.48297 * 16 15 14 44 44 H 1.08998 * 109.47035 * 299.48911 * 16 15 14 45 45 H 0.96999 * 120.00291 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.49092 * 303.14623 * 25 15 14 47 47 H 1.08997 * 109.49469 * 183.06377 * 25 15 14 48 48 H 1.08999 * 109.62430 * 350.89588 * 26 12 10 49 49 H 1.09007 * 109.62507 * 111.47152 * 26 12 10 50 50 H 1.08005 * 119.99473 * 179.97438 * 27 6 5 51 51 H 1.07993 * 120.00074 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2681 2.0706 -1.1972 5 6 2.7238 3.3757 -1.1972 6 6 2.9541 4.0273 0.0001 7 6 3.4559 5.4484 0.0000 8 1 3.5766 5.7910 1.0277 9 6 4.8039 5.5132 -0.7210 10 6 2.4631 6.3317 -0.7106 11 8 2.6491 6.6447 -1.8675 12 7 1.3684 6.7740 -0.0605 13 6 1.1732 6.4895 1.3693 14 6 0.8638 7.8133 2.0862 15 7 -0.2710 8.4696 1.4234 16 6 -0.7122 9.6490 2.1798 17 6 0.4273 10.6287 2.2924 18 1 1.3564 10.4381 1.7757 19 6 0.2840 11.7683 3.0552 20 7 -0.8475 12.0006 3.6841 21 14 1.6962 12.9830 3.1942 22 1 1.5884 13.9935 2.1114 23 1 1.6366 13.6626 4.5133 24 1 2.9864 12.2585 3.0686 25 6 0.0554 8.8258 0.0361 26 6 0.3345 7.5487 -0.7634 27 6 2.7238 3.3756 1.1971 28 6 2.2626 2.0725 1.1972 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 2.0919 1.5601 -2.1325 35 1 2.9035 3.8849 -2.1325 36 1 5.5431 4.9399 -0.1616 37 1 4.7009 5.0945 -1.7221 38 1 5.1278 6.5515 -0.7929 39 1 0.3397 5.7983 1.4945 40 1 2.0814 6.0511 1.7827 41 1 1.7363 8.4654 2.0442 42 1 0.6100 7.6112 3.1268 43 1 -1.5473 10.1211 1.6623 44 1 -1.0286 9.3436 3.1772 45 1 -0.9482 12.8021 4.2210 46 1 0.9391 9.4637 0.0227 47 1 -0.7847 9.3579 -0.4101 48 1 0.6881 7.8109 -1.7606 49 1 -0.5780 6.9572 -0.8392 50 1 2.9041 3.8847 2.1325 51 1 2.0822 1.5635 2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602209246.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:39 Heat of formation + Delta-G solvation = -17.818461 kcal Electronic energy + Delta-G solvation = -28908.443965 eV Core-core repulsion = 25192.932622 eV Total energy + Delta-G solvation = -3715.511343 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -40.55381 -39.24018 -37.56920 -35.27903 -34.41466 -32.73323 -32.28636 -31.10740 -30.59940 -28.69636 -28.20882 -25.64194 -24.79162 -23.59971 -23.00369 -22.82021 -22.03486 -20.98414 -19.99925 -18.47522 -17.25843 -16.69613 -16.33263 -15.76971 -15.66095 -15.23811 -14.84641 -14.63924 -14.40994 -14.09695 -13.93484 -13.86374 -13.64548 -13.59348 -13.48347 -13.19764 -12.96454 -12.63727 -12.33980 -12.13604 -11.94075 -11.84726 -11.78345 -11.58723 -11.32656 -11.16147 -11.11063 -11.01973 -10.99113 -10.83069 -10.66503 -10.62066 -10.28183 -9.93561 -9.72052 -9.57379 -9.04565 -8.61932 -8.49171 -8.39054 -7.28254 -6.08930 -4.18506 1.13681 1.27744 2.77749 3.18909 3.23559 3.30746 3.33425 3.59318 4.35688 4.47130 4.53365 4.63756 4.68427 4.77973 4.87126 4.89941 5.07155 5.09308 5.16070 5.21544 5.26650 5.33063 5.39291 5.40792 5.49341 5.58393 5.60924 5.68527 5.70562 5.75178 5.79683 5.86543 5.89959 5.94371 5.96394 6.00735 6.09813 6.12763 6.28559 6.40027 6.45864 6.46842 6.59342 6.69401 6.76942 6.85212 7.17691 7.45107 7.62080 7.83158 7.94376 8.16534 8.21447 8.34303 8.91406 9.49003 10.96146 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017048 B = 0.002830 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.985301 B = 9890.762137 C =10428.919172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 C -0.084 4.084 4 C -0.116 4.116 5 C -0.103 4.103 6 C -0.075 4.075 7 C -0.074 4.074 8 H 0.100 0.900 9 C -0.128 4.128 10 C 0.523 3.477 11 O -0.549 6.549 12 N -0.601 5.601 13 C 0.109 3.891 14 C 0.050 3.950 15 N -0.540 5.540 16 C 0.188 3.812 17 C -0.552 4.552 18 H 0.056 0.944 19 C 0.066 3.934 20 N -0.890 5.890 21 Si 0.889 3.111 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.275 1.275 25 C 0.050 3.950 26 C 0.115 3.885 27 C -0.107 4.107 28 C -0.116 4.116 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.120 0.880 35 H 0.125 0.875 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.044 0.956 42 H 0.078 0.922 43 H 0.029 0.971 44 H 0.036 0.964 45 H 0.263 0.737 46 H 0.041 0.959 47 H 0.077 0.923 48 H 0.086 0.914 49 H 0.067 0.933 50 H 0.124 0.876 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.519 -22.463 -5.758 24.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.122 4.122 3 C -0.084 4.084 4 C -0.134 4.134 5 C -0.121 4.121 6 C -0.076 4.076 7 C -0.095 4.095 8 H 0.118 0.882 9 C -0.186 4.186 10 C 0.311 3.689 11 O -0.427 6.427 12 N -0.334 5.334 13 C -0.014 4.014 14 C -0.079 4.079 15 N -0.265 5.265 16 C 0.063 3.937 17 C -0.591 4.591 18 H 0.074 0.926 19 C -0.137 4.137 20 N -0.528 5.528 21 Si 0.716 3.284 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.080 4.080 26 C -0.007 4.007 27 C -0.125 4.125 28 C -0.134 4.134 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.138 0.862 35 H 0.143 0.857 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.062 0.938 42 H 0.097 0.903 43 H 0.047 0.953 44 H 0.054 0.946 45 H 0.073 0.927 46 H 0.060 0.940 47 H 0.096 0.904 48 H 0.105 0.895 49 H 0.086 0.914 50 H 0.142 0.858 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.108 -22.488 -6.256 24.128 hybrid contribution 1.318 1.556 0.368 2.072 sum 7.427 -20.932 -5.888 22.978 Atomic orbital electron populations 1.21751 0.94636 1.01631 1.02465 1.20538 0.96277 0.92676 1.02673 1.19908 0.99017 0.96274 0.93245 1.20982 1.00162 0.94766 0.97519 1.21070 0.98466 0.94589 0.97953 1.19426 1.00386 0.94064 0.93680 1.20350 0.95488 0.91816 1.01838 0.88156 1.21634 0.93613 1.02649 1.00656 1.20356 0.81687 0.80074 0.86810 1.90648 1.75733 1.58808 1.17498 1.48150 1.20874 1.53437 1.10914 1.22147 1.01186 0.98429 0.79605 1.22316 0.94619 0.93231 0.97755 1.62481 1.32617 1.29660 1.01699 1.19763 0.95264 0.85150 0.93572 1.21729 1.00486 1.06487 1.30365 0.92629 1.24952 0.95631 0.97875 0.95213 1.69937 1.24574 1.26958 1.31341 0.86651 0.82734 0.81478 0.77510 1.20583 1.21069 1.19996 1.22247 1.00724 0.94477 0.90503 1.21825 0.89892 0.92727 0.96285 1.21052 0.99287 0.94887 0.97269 1.20967 1.00126 0.94792 0.97517 0.92397 0.92477 0.92510 0.91109 0.91188 0.86230 0.85750 0.91959 0.91528 0.91826 0.91043 0.90403 0.93764 0.90323 0.95321 0.94553 0.92735 0.94030 0.90434 0.89545 0.91446 0.85788 0.86032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.89 37.16 0.37 -0.67 16 2 C -0.08 -0.60 6.07 -27.88 -0.17 -0.77 16 3 C -0.08 -0.78 5.13 -104.62 -0.54 -1.32 16 4 C -0.12 -1.17 9.70 -39.58 -0.38 -1.56 16 5 C -0.10 -1.18 8.76 -39.58 -0.35 -1.53 16 6 C -0.08 -0.85 4.68 -104.62 -0.49 -1.34 16 7 C -0.07 -0.90 2.10 -92.92 -0.20 -1.09 16 8 H 0.10 1.10 6.00 -51.93 -0.31 0.79 16 9 C -0.13 -1.45 8.48 37.16 0.31 -1.13 16 10 C 0.52 8.19 6.47 -10.99 -0.07 8.12 16 11 O -0.55 -10.12 15.59 5.56 0.09 -10.03 16 12 N -0.60 -9.52 3.00 -172.18 -0.52 -10.04 16 13 C 0.11 1.58 6.43 -3.36 -0.02 1.55 16 14 C 0.05 0.91 5.17 -3.46 -0.02 0.89 16 15 N -0.54 -11.09 4.83 -235.47 -1.14 -12.22 16 16 C 0.19 4.67 5.11 -4.98 -0.03 4.65 16 17 C -0.55 -14.82 7.75 -34.44 -0.27 -15.08 16 18 H 0.06 1.50 5.88 -52.49 -0.31 1.20 16 19 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 20 N -0.89 -25.71 13.29 55.43 0.74 -24.97 16 21 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 C 0.05 0.96 5.24 -3.70 -0.02 0.94 16 26 C 0.12 1.91 6.61 -3.60 -0.02 1.89 16 27 C -0.11 -1.06 9.33 -39.59 -0.37 -1.43 16 28 C -0.12 -1.08 9.70 -39.58 -0.38 -1.46 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 33 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 34 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 35 H 0.12 1.51 7.55 -52.49 -0.40 1.12 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.78 7.14 -51.93 -0.37 0.41 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.08 0.92 4.98 -51.93 -0.26 0.66 16 41 H 0.04 0.90 6.80 -51.93 -0.35 0.55 16 42 H 0.08 1.40 8.11 -51.93 -0.42 0.98 16 43 H 0.03 0.76 8.07 -51.93 -0.42 0.34 16 44 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 46 H 0.04 0.90 6.91 -51.93 -0.36 0.54 16 47 H 0.08 1.47 8.06 -51.93 -0.42 1.05 16 48 H 0.09 1.45 7.04 -51.93 -0.37 1.09 16 49 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 50 H 0.12 1.03 7.76 -52.48 -0.41 0.62 16 51 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 LS Contribution 399.68 15.07 6.02 6.02 Total: -1.00 -30.70 399.68 -11.16 -41.86 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -8.59 Total: 0.78 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -2.74 Total: -7.62 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -0.92 Total: -47.23 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.09 Total: -10.03 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.70 -11.16 -41.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602209246.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.040 kcal (2) G-P(sol) polarization free energy of solvation -30.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds