Wall clock time and date at job start Tue Mar 31 2020 16:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.46821 * 2 1 4 4 C 1.38241 * 120.00270 * 269.72384 * 3 2 1 5 5 C 1.38235 * 120.00257 * 179.74795 * 4 3 2 6 6 C 1.38239 * 119.99409 * 0.52629 * 5 4 3 7 7 C 1.50707 * 119.99401 * 179.77000 * 6 5 4 8 8 H 1.08999 * 109.46622 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47034 * 299.97822 * 7 6 5 10 10 C 1.50699 * 109.47055 * 59.97942 * 7 6 5 11 11 O 1.21278 * 120.00449 * 260.99777 * 10 7 6 12 12 N 1.34777 * 119.99867 * 81.00525 * 10 7 6 13 13 C 1.47085 * 120.88093 * 4.55002 * 12 10 7 14 14 C 1.53699 * 108.27691 * 128.75746 * 13 12 10 15 15 N 1.46898 * 109.25751 * 54.08132 * 14 13 12 16 16 C 1.46896 * 111.00227 * 172.60767 * 15 14 13 17 17 C 1.50701 * 109.46886 * 59.48484 * 16 15 14 18 18 H 1.07999 * 120.00169 * 5.26219 * 17 16 15 19 19 C 1.37874 * 120.00021 * 185.26625 * 17 16 15 20 20 N 1.31518 * 120.00098 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00288 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47144 * 89.99371 * 21 19 17 23 23 H 1.48504 * 109.47212 * 209.99648 * 21 19 17 24 24 H 1.48500 * 109.46878 * 329.99419 * 21 19 17 25 25 C 1.46901 * 111.26936 * 296.75879 * 15 14 13 26 26 C 1.47081 * 120.88317 * 184.82884 * 12 10 7 27 27 C 1.38231 * 120.00261 * 359.75015 * 6 5 4 28 28 C 1.38233 * 120.00264 * 359.97438 * 27 6 5 29 29 H 1.08992 * 109.47302 * 299.99877 * 1 2 3 30 30 H 1.09000 * 109.46892 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46968 * 59.99868 * 1 2 3 32 32 H 1.08997 * 109.46968 * 120.00132 * 2 1 3 33 33 H 1.09002 * 109.47400 * 240.00126 * 2 1 3 34 34 H 1.08005 * 119.99391 * 0.02562 * 4 3 2 35 35 H 1.07999 * 120.00123 * 180.29838 * 5 4 3 36 36 H 1.08997 * 109.47447 * 295.40042 * 9 7 6 37 37 H 1.09001 * 109.46826 * 55.40225 * 9 7 6 38 38 H 1.09002 * 109.46608 * 175.39960 * 9 7 6 39 39 H 1.09001 * 109.62641 * 248.52401 * 13 12 10 40 40 H 1.08996 * 109.62789 * 9.10312 * 13 12 10 41 41 H 1.09002 * 109.64371 * 294.08103 * 14 13 12 42 42 H 1.08997 * 109.41616 * 173.94654 * 14 13 12 43 43 H 1.08995 * 109.47225 * 179.48297 * 16 15 14 44 44 H 1.08998 * 109.47035 * 299.48911 * 16 15 14 45 45 H 0.96999 * 120.00291 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.49092 * 303.14623 * 25 15 14 47 47 H 1.08997 * 109.49469 * 183.06377 * 25 15 14 48 48 H 1.08999 * 109.62430 * 350.89588 * 26 12 10 49 49 H 1.09007 * 109.62507 * 111.47152 * 26 12 10 50 50 H 1.08005 * 119.99473 * 179.97438 * 27 6 5 51 51 H 1.07993 * 120.00074 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2681 2.0706 -1.1972 5 6 2.7238 3.3757 -1.1972 6 6 2.9541 4.0273 0.0001 7 6 3.4559 5.4484 0.0000 8 1 3.5766 5.7910 1.0277 9 6 4.8039 5.5132 -0.7210 10 6 2.4631 6.3317 -0.7106 11 8 2.6491 6.6447 -1.8675 12 7 1.3684 6.7740 -0.0605 13 6 1.1732 6.4895 1.3693 14 6 0.8638 7.8133 2.0862 15 7 -0.2710 8.4696 1.4234 16 6 -0.7122 9.6490 2.1798 17 6 0.4273 10.6287 2.2924 18 1 1.3564 10.4381 1.7757 19 6 0.2840 11.7683 3.0552 20 7 -0.8475 12.0006 3.6841 21 14 1.6962 12.9830 3.1942 22 1 1.5884 13.9935 2.1114 23 1 1.6366 13.6626 4.5133 24 1 2.9864 12.2585 3.0686 25 6 0.0554 8.8258 0.0361 26 6 0.3345 7.5487 -0.7634 27 6 2.7238 3.3756 1.1971 28 6 2.2626 2.0725 1.1972 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 2.0919 1.5601 -2.1325 35 1 2.9035 3.8849 -2.1325 36 1 5.5431 4.9399 -0.1616 37 1 4.7009 5.0945 -1.7221 38 1 5.1278 6.5515 -0.7929 39 1 0.3397 5.7983 1.4945 40 1 2.0814 6.0511 1.7827 41 1 1.7363 8.4654 2.0442 42 1 0.6100 7.6112 3.1268 43 1 -1.5473 10.1211 1.6623 44 1 -1.0286 9.3436 3.1772 45 1 -0.9482 12.8021 4.2210 46 1 0.9391 9.4637 0.0227 47 1 -0.7847 9.3579 -0.4101 48 1 0.6881 7.8109 -1.7606 49 1 -0.5780 6.9572 -0.8392 50 1 2.9041 3.8847 2.1325 51 1 2.0822 1.5635 2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602209246.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:37 Heat of formation + Delta-G solvation = -34.438601 kcal Electronic energy + Delta-G solvation = -28909.164668 eV Core-core repulsion = 25192.932622 eV Total energy + Delta-G solvation = -3716.232047 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.66290 -40.19785 -39.03876 -36.15331 -35.98279 -34.31774 -33.46652 -32.06896 -31.76564 -29.93236 -29.42156 -27.34608 -25.87640 -24.66128 -24.41290 -23.68444 -23.40658 -21.98099 -21.24165 -19.78516 -18.60765 -18.21121 -17.57398 -17.01476 -16.74778 -16.43596 -16.09608 -16.01909 -15.70423 -15.50760 -15.16485 -14.94644 -14.79946 -14.54460 -14.37536 -14.20727 -13.93331 -13.86394 -13.61679 -13.51804 -13.19815 -12.97158 -12.91345 -12.72203 -12.62200 -12.53083 -12.46365 -12.33927 -12.20471 -12.05568 -11.92659 -11.82989 -11.69890 -11.62176 -11.55791 -10.81024 -10.63321 -9.79892 -9.75756 -9.40839 -9.06902 -8.18909 -6.38122 0.36952 0.52824 1.33576 1.35187 1.44643 1.56976 1.96957 2.34169 2.81734 3.06269 3.27138 3.50406 3.68137 3.82040 3.98055 3.98903 4.05849 4.08752 4.15292 4.25641 4.30611 4.33329 4.40901 4.51699 4.54909 4.59000 4.61258 4.69963 4.73013 4.75255 4.82401 4.88813 4.92880 5.01738 5.08592 5.11894 5.14877 5.16841 5.19832 5.21480 5.25382 5.30349 5.41918 5.45791 5.54219 5.68038 5.71111 5.76418 5.98044 6.12265 6.16088 6.42657 6.43232 6.82004 7.10185 7.33512 8.83493 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017048 B = 0.002830 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.985301 B = 9890.762137 C =10428.919172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 C -0.085 4.085 4 C -0.125 4.125 5 C -0.119 4.119 6 C -0.086 4.086 7 C -0.066 4.066 8 H 0.118 0.882 9 C -0.126 4.126 10 C 0.519 3.481 11 O -0.582 6.582 12 N -0.607 5.607 13 C 0.122 3.878 14 C 0.050 3.950 15 N -0.536 5.536 16 C 0.201 3.799 17 C -0.557 4.557 18 H 0.050 0.950 19 C 0.016 3.984 20 N -0.923 5.923 21 Si 0.952 3.048 22 H -0.277 1.277 23 H -0.278 1.278 24 H -0.270 1.270 25 C 0.056 3.944 26 C 0.125 3.875 27 C -0.108 4.108 28 C -0.119 4.119 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.046 0.954 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.129 0.871 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.085 0.915 40 H 0.111 0.889 41 H 0.021 0.979 42 H 0.082 0.918 43 H 0.004 0.996 44 H 0.016 0.984 45 H 0.266 0.734 46 H 0.014 0.986 47 H 0.074 0.926 48 H 0.082 0.918 49 H 0.082 0.918 50 H 0.145 0.855 51 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.669 -24.582 -4.804 26.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.120 4.120 3 C -0.086 4.086 4 C -0.143 4.143 5 C -0.137 4.137 6 C -0.087 4.087 7 C -0.087 4.087 8 H 0.136 0.864 9 C -0.183 4.183 10 C 0.309 3.691 11 O -0.462 6.462 12 N -0.339 5.339 13 C -0.001 4.001 14 C -0.079 4.079 15 N -0.260 5.260 16 C 0.075 3.925 17 C -0.596 4.596 18 H 0.068 0.932 19 C -0.184 4.184 20 N -0.562 5.562 21 Si 0.778 3.222 22 H -0.203 1.203 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.073 4.073 26 C 0.002 3.998 27 C -0.126 4.126 28 C -0.137 4.137 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.147 0.853 35 H 0.126 0.874 36 H 0.104 0.896 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.104 0.896 40 H 0.129 0.871 41 H 0.039 0.961 42 H 0.101 0.899 43 H 0.022 0.978 44 H 0.034 0.966 45 H 0.075 0.925 46 H 0.032 0.968 47 H 0.093 0.907 48 H 0.101 0.899 49 H 0.100 0.900 50 H 0.162 0.838 51 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 7.267 -24.630 -5.301 26.221 hybrid contribution 0.926 2.155 0.035 2.345 sum 8.193 -22.476 -5.266 24.495 Atomic orbital electron populations 1.21742 0.94581 1.02328 1.01736 1.20584 0.96191 0.91474 1.03754 1.20207 0.98122 0.97264 0.92957 1.21154 1.00143 0.94396 0.98595 1.21059 0.99656 0.95373 0.97604 1.19363 1.01596 0.93490 0.94230 1.20353 0.94526 0.91753 1.02099 0.86431 1.21627 0.93911 1.02250 1.00521 1.21043 0.81710 0.79797 0.86578 1.90629 1.76406 1.60041 1.19159 1.48270 1.20838 1.53290 1.11498 1.22153 1.03337 0.96231 0.78347 1.22388 0.92528 0.94477 0.98519 1.62419 1.34085 1.27541 1.01969 1.19424 0.94124 0.86289 0.92674 1.21930 1.00660 1.07024 1.29992 0.93171 1.25738 0.98008 0.99671 0.94969 1.70042 1.26365 1.27701 1.32094 0.85644 0.79769 0.79141 0.77670 1.20312 1.20283 1.19451 1.22199 0.99319 0.95660 0.90158 1.21635 0.90917 0.91686 0.95566 1.21287 0.98644 0.95255 0.97370 1.21285 0.99318 0.94670 0.98398 0.92839 0.91123 0.93503 0.89735 0.90461 0.85274 0.87421 0.89559 0.92595 0.92917 0.89645 0.87130 0.96092 0.89935 0.97777 0.96598 0.92500 0.96760 0.90730 0.89924 0.90012 0.83776 0.83860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.89 71.98 0.71 -1.00 16 2 C -0.08 -0.95 6.07 29.85 0.18 -0.77 16 3 C -0.09 -1.37 5.13 -19.86 -0.10 -1.48 16 4 C -0.12 -2.35 9.70 22.27 0.22 -2.13 16 5 C -0.12 -2.64 8.76 22.27 0.20 -2.44 16 6 C -0.09 -1.78 4.68 -19.86 -0.09 -1.87 16 7 C -0.07 -1.50 2.10 -12.28 -0.03 -1.53 16 8 H 0.12 2.21 6.00 -2.39 -0.01 2.20 16 9 C -0.13 -2.71 8.48 71.98 0.61 -2.10 16 10 C 0.52 15.87 6.47 87.66 0.57 16.44 16 11 O -0.58 -21.66 15.59 -3.02 -0.05 -21.71 16 12 N -0.61 -18.56 3.00 -817.03 -2.45 -21.02 16 13 C 0.12 3.23 6.43 86.50 0.56 3.79 16 14 C 0.05 1.78 5.17 86.54 0.45 2.23 16 15 N -0.54 -22.19 4.83 -898.90 -4.34 -26.53 16 16 C 0.20 10.30 5.11 85.56 0.44 10.74 16 17 C -0.56 -30.45 7.75 25.60 0.20 -30.25 16 18 H 0.05 2.76 5.88 -2.91 -0.02 2.74 16 19 C 0.02 0.89 5.46 84.65 0.46 1.36 16 20 N -0.92 -53.99 13.29 21.45 0.28 -53.71 16 21 Si 0.95 43.73 29.54 68.60 2.03 45.76 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 23 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 24 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 25 C 0.06 2.19 5.24 86.38 0.45 2.64 16 26 C 0.12 4.11 6.61 86.35 0.57 4.68 16 27 C -0.11 -1.79 9.33 22.27 0.21 -1.58 16 28 C -0.12 -1.82 9.70 22.27 0.22 -1.60 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 0.63 8.14 -2.39 -0.02 0.62 16 32 H 0.08 0.76 8.09 -2.39 -0.02 0.74 16 33 H 0.08 0.78 8.08 -2.39 -0.02 0.76 16 34 H 0.13 2.05 8.06 -2.91 -0.02 2.03 16 35 H 0.11 2.69 7.55 -2.91 -0.02 2.66 16 36 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.05 1.31 7.14 -2.39 -0.02 1.30 16 38 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.11 2.24 4.98 -2.39 -0.01 2.22 16 41 H 0.02 0.84 6.80 -2.39 -0.02 0.83 16 42 H 0.08 2.86 8.11 -2.39 -0.02 2.84 16 43 H 0.00 0.23 8.07 -2.39 -0.02 0.21 16 44 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 46 H 0.01 0.63 6.91 -2.39 -0.02 0.61 16 47 H 0.07 2.91 8.06 -2.39 -0.02 2.89 16 48 H 0.08 2.81 7.04 -2.39 -0.02 2.79 16 49 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 50 H 0.14 1.76 7.76 -2.91 -0.02 1.74 16 51 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -67.24 399.68 2.18 -65.07 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.90 Total: 17.02 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: 5.81 Total: -4.88 kcal Atomic # 7 Polarization: -94.75 SS G_CDS: -6.51 Total: -101.25 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -0.05 Total: -21.71 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -67.24 2.18 -65.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602209246.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.627 kcal (2) G-P(sol) polarization free energy of solvation -67.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds