Wall clock time and date at job start Tue Mar 31 2020 16:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 110.05893 * 2 1 4 4 C 1.54002 * 109.91687 * 121.19072 * 2 1 3 5 5 H 1.08995 * 110.33025 * 239.55662 * 4 2 1 6 6 C 1.50699 * 110.41147 * 1.72792 * 4 2 1 7 7 C 1.38235 * 120.00267 * 249.40848 * 6 4 2 8 8 C 1.38240 * 120.00070 * 179.76922 * 7 6 4 9 9 C 1.38233 * 119.99993 * 0.50262 * 8 7 6 10 10 C 1.38238 * 119.99734 * 359.75013 * 9 8 7 11 11 C 1.38228 * 120.00166 * 0.02562 * 10 9 8 12 12 C 1.54619 * 105.04698 * 120.66203 * 4 2 1 13 13 C 1.54943 * 102.83470 * 21.85486 * 12 4 2 14 14 N 1.47492 * 109.91337 * 238.80773 * 2 1 3 15 15 C 1.34777 * 127.03046 * 35.14160 * 14 2 1 16 16 O 1.21278 * 119.99861 * 0.03563 * 15 14 2 17 17 C 1.50700 * 119.99675 * 180.02562 * 15 14 2 18 18 H 1.08997 * 109.47219 * 40.00326 * 17 15 14 19 19 N 1.46904 * 109.47095 * 160.00565 * 17 15 14 20 20 C 1.53002 * 109.47208 * 280.00079 * 17 15 14 21 21 C 1.52996 * 109.47347 * 175.00287 * 20 17 15 22 22 C 1.50698 * 109.47473 * 180.02562 * 21 20 17 23 23 H 1.08003 * 119.99636 * 359.97438 * 22 21 20 24 24 C 1.37874 * 120.00343 * 180.02562 * 22 21 20 25 25 N 1.31514 * 119.99637 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00151 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47076 * 90.00079 * 26 24 22 28 28 H 1.48495 * 109.47351 * 209.99682 * 26 24 22 29 29 H 1.48501 * 109.47209 * 330.00026 * 26 24 22 30 30 H 1.09002 * 109.47142 * 290.55686 * 1 2 3 31 31 H 1.09001 * 109.47278 * 50.56149 * 1 2 3 32 32 H 1.09001 * 109.47131 * 170.56391 * 1 2 3 33 33 H 1.09001 * 109.46971 * 181.19780 * 3 2 1 34 34 H 1.09004 * 109.46906 * 301.19168 * 3 2 1 35 35 H 1.08997 * 109.47607 * 61.19177 * 3 2 1 36 36 H 1.07999 * 119.99734 * 359.97438 * 7 6 4 37 37 H 1.07999 * 119.99761 * 180.22934 * 8 7 6 38 38 H 1.07995 * 119.99943 * 179.72641 * 9 8 7 39 39 H 1.08010 * 119.99588 * 179.97438 * 10 9 8 40 40 H 1.08009 * 119.99821 * 179.97438 * 11 10 9 41 41 H 1.09003 * 110.73872 * 140.18701 * 12 4 2 42 42 H 1.08998 * 110.74464 * 263.33262 * 12 4 2 43 43 H 1.09003 * 110.66642 * 81.06536 * 13 12 4 44 44 H 1.09007 * 110.65772 * 204.01497 * 13 12 4 45 45 H 1.00904 * 110.99691 * 296.04318 * 19 17 15 46 46 H 1.00894 * 111.00137 * 59.99617 * 19 17 15 47 47 H 1.09001 * 109.47312 * 295.00478 * 20 17 15 48 48 H 1.08998 * 109.46978 * 55.00236 * 20 17 15 49 49 H 1.09004 * 109.46837 * 299.99862 * 21 20 17 50 50 H 1.08998 * 109.47123 * 60.00038 * 21 20 17 51 51 H 0.97005 * 119.99507 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0545 -0.7499 1.2386 5 1 2.6704 -0.0891 1.8486 6 6 0.9063 -1.2913 2.0507 7 6 0.6203 -0.7498 3.2900 8 6 -0.4360 -1.2433 4.0328 9 6 -1.1998 -2.2851 3.5408 10 6 -0.9105 -2.8301 2.3038 11 6 0.1428 -2.3335 1.5590 12 6 2.9072 -1.9097 0.6744 13 6 3.2651 -1.4130 -0.7490 14 7 2.0323 -0.7182 -1.1863 15 6 1.4815 -0.7389 -2.4162 16 8 0.4622 -0.1191 -2.6346 17 6 2.1325 -1.5319 -3.5200 18 1 2.4994 -2.4773 -3.1204 19 7 1.1489 -1.7965 -4.5785 20 6 3.3027 -0.7343 -4.0991 21 6 4.0401 -1.5882 -5.1326 22 6 5.1931 -0.8029 -5.7026 23 1 5.3809 0.2046 -5.3620 24 6 6.0076 -1.3703 -6.6595 25 7 5.7785 -2.5970 -7.0744 26 14 7.4363 -0.3966 -7.3664 27 1 8.6517 -0.6354 -6.5471 28 1 7.6883 -0.8313 -8.7638 29 1 7.1050 1.0509 -7.3504 30 1 -0.3633 0.3609 0.9622 31 1 -0.3634 0.6528 -0.7937 32 1 -0.3633 -1.0138 -0.1685 33 1 3.1444 1.4260 -0.0215 34 1 1.6793 1.9610 -0.8791 35 1 1.7142 1.9484 0.9004 36 1 1.2200 0.0610 3.6764 37 1 -0.6618 -0.8177 4.9994 38 1 -2.0222 -2.6736 4.1231 39 1 -1.5070 -3.6444 1.9196 40 1 0.3691 -2.7596 0.5926 41 1 3.8081 -2.0524 1.2712 42 1 2.3255 -2.8305 0.6300 43 1 4.1057 -0.7199 -0.7145 44 1 3.4887 -2.2544 -1.4050 45 1 0.3974 -2.3768 -4.2370 46 1 0.7934 -0.9351 -4.9653 47 1 2.9252 0.1695 -4.5774 48 1 3.9887 -0.4616 -3.2972 49 1 4.4177 -2.4920 -4.6543 50 1 3.3541 -1.8610 -5.9345 51 1 6.3513 -2.9961 -7.7480 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602545744.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:17 Heat of formation + Delta-G solvation = -17.351914 kcal Electronic energy + Delta-G solvation = -29329.750729 eV Core-core repulsion = 25614.259617 eV Total energy + Delta-G solvation = -3715.491112 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.10821 -39.34959 -37.68919 -35.22382 -33.23988 -32.78942 -32.30428 -31.19758 -30.16895 -29.90683 -27.22721 -26.39561 -25.83538 -23.94200 -23.07545 -22.33544 -21.98670 -20.43454 -19.72088 -18.39264 -17.10469 -16.83870 -16.35341 -16.04912 -15.54475 -15.51098 -15.12567 -15.03618 -14.40746 -14.24416 -14.02127 -13.94618 -13.60307 -13.51887 -13.20363 -13.01744 -12.70625 -12.62932 -12.31399 -12.16527 -11.98886 -11.94793 -11.70561 -11.55683 -11.45883 -11.31720 -11.02906 -10.89570 -10.82646 -10.79036 -10.57798 -10.52552 -9.91906 -9.75448 -9.34795 -9.11143 -8.99134 -8.91144 -8.59110 -8.32806 -8.17583 -5.93691 -3.95693 1.10664 1.17135 2.82041 3.02706 3.34263 3.40981 3.44427 3.51661 4.28988 4.32773 4.40623 4.50515 4.70638 4.75721 4.87626 4.91406 4.95825 5.00848 5.07656 5.08794 5.14965 5.25005 5.34536 5.40270 5.41908 5.46481 5.53100 5.60571 5.67275 5.75228 5.78118 5.80403 5.82557 5.87937 5.90605 5.95786 6.14527 6.23369 6.26336 6.28865 6.39942 6.45890 6.53132 6.68703 6.76502 7.09754 7.43392 7.68027 7.76224 7.80914 7.96636 8.13593 8.35864 8.48966 9.12273 9.67417 11.17214 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.021596 B = 0.002672 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.225900 B =10477.705901 C =10708.921651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.167 3.833 3 C -0.152 4.152 4 C -0.058 4.058 5 H 0.092 0.908 6 C -0.062 4.062 7 C -0.119 4.119 8 C -0.121 4.121 9 C -0.126 4.126 10 C -0.120 4.120 11 C -0.107 4.107 12 C -0.129 4.129 13 C 0.096 3.904 14 N -0.611 5.611 15 C 0.504 3.496 16 O -0.549 6.549 17 C 0.082 3.918 18 H 0.095 0.905 19 N -0.807 5.807 20 C -0.093 4.093 21 C 0.033 3.967 22 C -0.521 4.521 23 H 0.051 0.949 24 C 0.058 3.942 25 N -0.893 5.893 26 Si 0.888 3.112 27 H -0.282 1.282 28 H -0.287 1.287 29 H -0.275 1.275 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.090 0.910 45 H 0.333 0.667 46 H 0.347 0.653 47 H 0.051 0.949 48 H 0.052 0.948 49 H 0.012 0.988 50 H 0.034 0.966 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.039 1.128 23.880 26.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.082 3.918 3 C -0.211 4.211 4 C -0.077 4.077 5 H 0.111 0.889 6 C -0.062 4.062 7 C -0.137 4.137 8 C -0.139 4.139 9 C -0.144 4.144 10 C -0.138 4.138 11 C -0.125 4.125 12 C -0.167 4.167 13 C -0.027 4.027 14 N -0.346 5.346 15 C 0.292 3.708 16 O -0.427 6.427 17 C -0.034 4.034 18 H 0.113 0.887 19 N -0.334 5.334 20 C -0.132 4.132 21 C -0.005 4.005 22 C -0.560 4.560 23 H 0.070 0.930 24 C -0.143 4.143 25 N -0.532 5.532 26 Si 0.716 3.284 27 H -0.208 1.208 28 H -0.213 1.213 29 H -0.200 1.200 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.109 0.891 45 H 0.145 0.855 46 H 0.162 0.838 47 H 0.070 0.930 48 H 0.071 0.929 49 H 0.030 0.970 50 H 0.053 0.947 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.969 0.965 23.101 25.591 hybrid contribution 0.216 1.007 0.323 1.079 sum -10.753 1.972 23.424 25.850 Atomic orbital electron populations 1.22282 0.93309 1.03027 1.01863 1.20970 0.95077 0.91691 0.84071 1.22150 1.01361 0.95175 1.02372 1.21214 0.94464 0.97173 0.94856 0.88936 1.19621 0.96545 0.95697 0.94326 1.21030 0.98051 1.00189 0.94402 1.21099 0.95785 0.97144 0.99826 1.21121 0.99886 0.97114 0.96256 1.21140 0.97672 1.00087 0.94901 1.21039 0.95423 0.96458 0.99543 1.22905 1.00185 0.97829 0.95822 1.22619 0.87571 0.97489 0.95048 1.49101 1.26432 1.49946 1.09095 1.22412 0.84323 0.81630 0.82394 1.90622 1.25179 1.45314 1.81550 1.21817 0.94882 0.98670 0.88034 0.88701 1.59029 1.19383 1.22595 1.32433 1.21631 0.93198 0.98654 0.99691 1.19001 0.94189 0.93944 0.93322 1.21271 1.12482 1.00189 1.22011 0.93043 1.24987 0.97726 0.94945 0.96668 1.69976 1.38810 1.13627 1.30778 0.86659 0.82911 0.80391 0.78402 1.20779 1.21263 1.19998 0.92515 0.90857 0.92102 0.92117 0.91924 0.91870 0.86182 0.86262 0.86354 0.86206 0.86077 0.89721 0.90268 0.90413 0.89140 0.85548 0.83850 0.92982 0.92892 0.96975 0.94727 0.93112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 6.28 37.15 0.23 -1.61 16 2 C 0.17 1.90 0.96 -130.76 -0.12 1.78 16 3 C -0.15 -1.69 8.60 37.16 0.32 -1.37 16 4 C -0.06 -0.52 2.85 -90.40 -0.26 -0.78 16 5 H 0.09 0.72 7.51 -51.93 -0.39 0.33 16 6 C -0.06 -0.57 3.18 -104.62 -0.33 -0.90 16 7 C -0.12 -0.99 9.56 -39.58 -0.38 -1.37 16 8 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 9 C -0.13 -1.02 10.05 -39.58 -0.40 -1.42 16 10 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 11 C -0.11 -1.03 6.45 -39.58 -0.26 -1.29 16 12 C -0.13 -1.13 6.46 -24.85 -0.16 -1.29 16 13 C 0.10 1.04 6.55 -2.13 -0.01 1.03 16 14 N -0.61 -7.98 2.83 -155.10 -0.44 -8.42 16 15 C 0.50 8.07 6.92 -10.99 -0.08 7.99 16 16 O -0.55 -10.03 14.21 5.56 0.08 -9.95 16 17 C 0.08 1.39 2.56 -68.86 -0.18 1.21 16 18 H 0.10 1.54 6.92 -51.93 -0.36 1.18 16 19 N -0.81 -13.78 8.44 -5.65 -0.05 -13.83 16 20 C -0.09 -1.90 4.78 -26.73 -0.13 -2.02 16 21 C 0.03 0.83 4.86 -27.89 -0.14 0.69 16 22 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 23 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 24 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 25 N -0.89 -26.87 13.29 55.43 0.74 -26.14 16 26 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 29 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 30 H 0.06 0.65 7.02 -51.93 -0.36 0.28 16 31 H 0.07 1.10 6.58 -51.93 -0.34 0.76 16 32 H 0.06 0.80 5.84 -51.93 -0.30 0.50 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.12 0.81 8.00 -52.49 -0.42 0.39 16 37 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 38 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 39 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16 40 H 0.12 1.23 6.64 -52.48 -0.35 0.88 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.70 6.19 -51.93 -0.32 0.38 16 43 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.09 1.02 6.68 -51.92 -0.35 0.67 16 45 H 0.33 4.96 9.06 -39.29 -0.36 4.60 16 46 H 0.35 6.04 8.58 -39.30 -0.34 5.71 16 47 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 48 H 0.05 1.02 7.76 -51.93 -0.40 0.62 16 49 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.03 0.96 7.75 -51.93 -0.40 0.56 16 51 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 396.09 15.07 5.97 5.97 Total: -1.00 -32.22 396.09 -10.28 -42.50 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -8.46 Total: 8.78 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -3.09 Total: -15.62 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: 0.25 Total: -48.39 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.08 Total: -9.95 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.22 -10.28 -42.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602545744.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.149 kcal (2) G-P(sol) polarization free energy of solvation -32.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds