Wall clock time and date at job start Tue Mar 31 2020 16:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 110.05300 * 2 1 4 4 C 1.54002 * 109.91469 * 121.19231 * 2 1 3 5 5 H 1.08995 * 110.32528 * 239.66222 * 4 2 1 6 6 C 1.50698 * 110.32689 * 1.77647 * 4 2 1 7 7 C 1.38238 * 119.99896 * 249.71729 * 6 4 2 8 8 C 1.38234 * 119.99846 * 180.02562 * 7 6 4 9 9 C 1.38236 * 120.00058 * 359.97438 * 8 7 6 10 10 C 1.38234 * 120.00376 * 0.25490 * 9 8 7 11 11 C 1.38233 * 120.00146 * 69.68873 * 6 4 2 12 12 C 1.54618 * 105.13318 * 120.71776 * 4 2 1 13 13 C 1.54944 * 102.83770 * 21.80164 * 12 4 2 14 14 N 1.47718 * 109.94829 * 238.68647 * 2 1 3 15 15 C 1.34778 * 127.02777 * 35.19643 * 14 2 1 16 16 O 1.21283 * 120.00299 * 359.93316 * 15 14 2 17 17 C 1.50704 * 119.99788 * 179.97438 * 15 14 2 18 18 H 1.08999 * 109.47409 * 320.00355 * 17 15 14 19 19 N 1.46903 * 109.47099 * 199.99597 * 17 15 14 20 20 C 1.53006 * 109.46957 * 79.99899 * 17 15 14 21 21 C 1.52997 * 109.47201 * 184.99851 * 20 17 15 22 22 C 1.50696 * 109.47337 * 179.97438 * 21 20 17 23 23 H 1.08001 * 120.00050 * 0.02562 * 22 21 20 24 24 C 1.37875 * 120.00215 * 179.97438 * 22 21 20 25 25 N 1.31519 * 120.00269 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 119.99835 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.47208 * 89.99864 * 26 24 22 28 28 H 1.48498 * 109.47158 * 209.99496 * 26 24 22 29 29 H 1.48500 * 109.47269 * 329.99670 * 26 24 22 30 30 H 1.09000 * 109.47272 * 290.55798 * 1 2 3 31 31 H 1.08993 * 109.47408 * 50.56290 * 1 2 3 32 32 H 1.09005 * 109.46916 * 170.55777 * 1 2 3 33 33 H 1.09008 * 109.46824 * 181.19324 * 3 2 1 34 34 H 1.09001 * 109.47627 * 301.18760 * 3 2 1 35 35 H 1.08994 * 109.47395 * 61.19638 * 3 2 1 36 36 H 1.07994 * 120.00473 * 359.97438 * 7 6 4 37 37 H 1.08001 * 119.99962 * 179.97438 * 8 7 6 38 38 H 1.08000 * 120.00137 * 179.97438 * 9 8 7 39 39 H 1.08003 * 120.00553 * 179.72341 * 10 9 8 40 40 H 1.08001 * 119.99842 * 0.02562 * 11 6 4 41 41 H 1.08998 * 110.73831 * 140.13360 * 12 4 2 42 42 H 1.09001 * 110.74145 * 263.27916 * 12 4 2 43 43 H 1.08996 * 110.66337 * 81.06283 * 13 12 4 44 44 H 1.09002 * 110.65837 * 204.01783 * 13 12 4 45 45 H 1.00894 * 111.00334 * 300.00329 * 19 17 15 46 46 H 1.00900 * 110.99658 * 63.95927 * 19 17 15 47 47 H 1.08998 * 109.47088 * 305.00448 * 20 17 15 48 48 H 1.09005 * 109.46936 * 65.00016 * 20 17 15 49 49 H 1.09002 * 109.47119 * 300.00378 * 21 20 17 50 50 H 1.09001 * 109.46735 * 59.99847 * 21 20 17 51 51 H 0.97001 * 119.99974 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0546 1.4372 0.0000 4 6 2.0546 -0.7499 1.2386 5 1 2.6689 -0.0886 1.8495 6 6 0.9049 -1.2915 2.0485 7 6 0.6129 -0.7461 3.2847 8 6 -0.4414 -1.2432 4.0279 9 6 -1.2040 -2.2853 3.5346 10 6 -0.9091 -2.8339 2.3005 11 6 0.1419 -2.3332 1.5550 12 6 2.9089 -1.9096 0.6766 13 6 3.2673 -1.4145 -0.7473 14 7 2.0340 -0.7217 -1.1863 15 6 1.4844 -0.7442 -2.4167 16 8 0.4645 -0.1259 -2.6368 17 6 2.1367 -1.5386 -3.5188 18 1 3.2190 -1.4256 -3.4566 19 7 1.6670 -1.0466 -4.8209 20 6 1.7687 -3.0162 -3.3690 21 6 2.5289 -3.8392 -4.4108 22 6 2.1671 -5.2946 -4.2629 23 1 1.4647 -5.6018 -3.5021 24 6 2.7318 -6.2339 -5.0993 25 7 2.4156 -7.5040 -4.9706 26 14 3.9461 -5.7026 -6.4157 27 1 5.3229 -5.7327 -5.8602 28 1 3.8588 -6.6293 -7.5727 29 1 3.6218 -4.3234 -6.8605 30 1 -0.3634 0.3609 0.9622 31 1 -0.3634 0.6528 -0.7936 32 1 -0.3633 -1.0138 -0.1686 33 1 3.1444 1.4262 -0.0214 34 1 1.6793 1.9611 -0.8791 35 1 1.7141 1.9483 0.9005 36 1 1.2089 0.0678 3.6704 37 1 -0.6692 -0.8174 4.9939 38 1 -2.0274 -2.6740 4.1154 39 1 -1.5021 -3.6510 1.9170 40 1 0.3700 -2.7592 0.5891 41 1 3.8094 -2.0504 1.2742 42 1 2.3282 -2.8310 0.6331 43 1 4.1070 -0.7205 -0.7131 44 1 3.4922 -2.2566 -1.4019 45 1 0.6658 -1.1407 -4.9033 46 1 1.9541 -0.0911 -4.9714 47 1 2.0372 -3.3579 -2.3694 48 1 0.6963 -3.1406 -3.5196 49 1 2.2604 -3.4974 -5.4104 50 1 3.6013 -3.7147 -4.2602 51 1 2.8132 -8.1649 -5.5588 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602545746.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:23 Heat of formation + Delta-G solvation = -14.413672 kcal Electronic energy + Delta-G solvation = -29641.808446 eV Core-core repulsion = 25926.444746 eV Total energy + Delta-G solvation = -3715.363701 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.10004 -39.33453 -37.69131 -35.37594 -33.23456 -32.75262 -32.30792 -31.08795 -30.50542 -29.96777 -27.24601 -26.73534 -25.85396 -23.88965 -23.00683 -22.26715 -21.88520 -20.29316 -19.73770 -18.44150 -17.02816 -16.92506 -16.66004 -16.24701 -15.56306 -15.45199 -15.19699 -14.89544 -14.42180 -14.18524 -14.11871 -13.82022 -13.50224 -13.48814 -13.20779 -13.04062 -12.74982 -12.69504 -12.57067 -12.32132 -12.11955 -11.96455 -11.71446 -11.63864 -11.41050 -11.33107 -11.01676 -10.99819 -10.86255 -10.75679 -10.71315 -10.20386 -9.90108 -9.73747 -9.53469 -9.10532 -9.00516 -8.85638 -8.60554 -8.49652 -8.35228 -5.99508 -3.97073 1.20297 1.28020 2.75033 2.95882 3.35609 3.43819 3.51951 3.61281 4.30499 4.36413 4.42960 4.51484 4.78636 4.80590 4.86090 4.92546 4.97384 5.01964 5.03004 5.09469 5.15365 5.31887 5.34505 5.35460 5.40184 5.42980 5.52625 5.55067 5.64616 5.69698 5.77005 5.79894 5.84955 5.85877 5.91949 5.99801 6.11271 6.23569 6.31797 6.33771 6.41060 6.45761 6.49003 6.55677 6.87060 6.87366 7.28664 7.36652 7.57991 7.62798 7.67574 7.86678 8.28684 8.57899 9.05094 9.63638 11.13919 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013626 B = 0.003439 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.361366 B = 8140.062475 C = 9215.149596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.167 3.833 3 C -0.150 4.150 4 C -0.057 4.057 5 H 0.091 0.909 6 C -0.065 4.065 7 C -0.120 4.120 8 C -0.122 4.122 9 C -0.125 4.125 10 C -0.118 4.118 11 C -0.105 4.105 12 C -0.129 4.129 13 C 0.092 3.908 14 N -0.611 5.611 15 C 0.505 3.495 16 O -0.547 6.547 17 C 0.078 3.922 18 H 0.095 0.905 19 N -0.811 5.811 20 C -0.086 4.086 21 C -0.003 4.003 22 C -0.520 4.520 23 H 0.068 0.932 24 C 0.066 3.934 25 N -0.906 5.906 26 Si 0.878 3.122 27 H -0.279 1.279 28 H -0.290 1.290 29 H -0.260 1.260 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.095 0.905 45 H 0.349 0.651 46 H 0.334 0.666 47 H 0.059 0.941 48 H 0.058 0.942 49 H 0.034 0.966 50 H 0.007 0.993 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.353 17.218 17.683 24.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.082 3.918 3 C -0.208 4.208 4 C -0.076 4.076 5 H 0.109 0.891 6 C -0.065 4.065 7 C -0.138 4.138 8 C -0.140 4.140 9 C -0.143 4.143 10 C -0.136 4.136 11 C -0.122 4.122 12 C -0.167 4.167 13 C -0.031 4.031 14 N -0.346 5.346 15 C 0.293 3.707 16 O -0.424 6.424 17 C -0.038 4.038 18 H 0.113 0.887 19 N -0.339 5.339 20 C -0.124 4.124 21 C -0.041 4.041 22 C -0.558 4.558 23 H 0.086 0.914 24 C -0.135 4.135 25 N -0.546 5.546 26 Si 0.706 3.294 27 H -0.205 1.205 28 H -0.216 1.216 29 H -0.184 1.184 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.142 0.858 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.113 0.887 45 H 0.164 0.836 46 H 0.146 0.854 47 H 0.077 0.923 48 H 0.077 0.923 49 H 0.052 0.948 50 H 0.026 0.974 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.468 16.790 17.028 23.918 hybrid contribution 0.151 0.786 0.020 0.801 sum -0.317 17.577 17.047 24.488 Atomic orbital electron populations 1.22288 0.93146 1.03367 1.01789 1.21029 0.95258 0.91429 0.84103 1.22129 1.01035 0.95306 1.02357 1.21199 0.94522 0.97105 0.94745 0.89082 1.19592 0.96570 0.95926 0.94412 1.20987 0.98140 1.00187 0.94482 1.21077 0.95923 0.97279 0.99750 1.21134 0.99831 0.97044 0.96282 1.21191 0.97649 0.99939 0.94809 1.21109 0.95250 0.96191 0.99698 1.22898 1.00276 0.98192 0.95377 1.22651 0.87179 0.97388 0.95868 1.49140 1.26509 1.49783 1.09154 1.22277 0.84643 0.81066 0.82709 1.90633 1.24556 1.45530 1.81723 1.21838 0.99792 0.96803 0.85367 0.88690 1.59053 1.20163 1.26384 1.28256 1.21464 1.01384 0.88725 1.00853 1.19480 0.94416 0.94922 0.95274 1.21165 1.26663 0.89929 1.18066 0.91351 1.25008 0.96490 0.94758 0.97203 1.69925 1.44383 1.00911 1.39331 0.86788 0.81595 0.79292 0.81762 1.20515 1.21624 1.18407 0.92441 0.91011 0.91752 0.92363 0.92142 0.91739 0.86335 0.86343 0.86339 0.85991 0.85776 0.89749 0.89752 0.90967 0.88667 0.83637 0.85383 0.92269 0.92298 0.94818 0.97450 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 6.28 37.16 0.23 -1.68 16 2 C 0.17 1.85 0.96 -130.63 -0.13 1.73 16 3 C -0.15 -1.47 8.61 37.16 0.32 -1.15 16 4 C -0.06 -0.53 2.85 -90.40 -0.26 -0.79 16 5 H 0.09 0.70 7.51 -51.93 -0.39 0.31 16 6 C -0.06 -0.66 3.18 -104.62 -0.33 -0.99 16 7 C -0.12 -1.09 9.54 -39.58 -0.38 -1.47 16 8 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 9 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 10 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 11 C -0.10 -1.20 6.44 -39.58 -0.25 -1.45 16 12 C -0.13 -1.22 6.46 -24.85 -0.16 -1.38 16 13 C 0.09 0.96 6.67 -2.13 -0.01 0.95 16 14 N -0.61 -7.68 2.84 -154.93 -0.44 -8.12 16 15 C 0.50 7.74 6.92 -10.98 -0.08 7.66 16 16 O -0.55 -9.66 14.23 5.56 0.08 -9.58 16 17 C 0.08 1.24 2.38 -68.86 -0.16 1.07 16 18 H 0.10 1.41 7.56 -51.93 -0.39 1.02 16 19 N -0.81 -12.87 8.44 -5.65 -0.05 -12.91 16 20 C -0.09 -1.65 4.62 -26.73 -0.12 -1.77 16 21 C 0.00 -0.08 3.93 -27.89 -0.11 -0.19 16 22 C -0.52 -14.70 9.66 -34.44 -0.33 -15.03 16 23 H 0.07 2.08 7.99 -52.49 -0.42 1.66 16 24 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 25 N -0.91 -28.03 13.96 55.43 0.77 -27.25 16 26 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 27 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 28 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 29 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 30 H 0.06 0.68 7.01 -51.93 -0.36 0.31 16 31 H 0.07 1.07 6.60 -51.93 -0.34 0.73 16 32 H 0.06 0.92 5.83 -51.93 -0.30 0.62 16 33 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.12 0.85 8.00 -52.49 -0.42 0.43 16 37 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 38 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 39 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 40 H 0.12 1.57 6.64 -52.49 -0.35 1.22 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.08 0.92 6.19 -51.93 -0.32 0.59 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.10 1.09 6.02 -51.93 -0.31 0.78 16 45 H 0.35 5.69 8.58 -39.29 -0.34 5.35 16 46 H 0.33 4.60 9.06 -39.29 -0.36 4.24 16 47 H 0.06 1.09 6.99 -51.93 -0.36 0.72 16 48 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 49 H 0.03 0.82 6.81 -51.93 -0.35 0.47 16 50 H 0.01 0.17 7.57 -51.93 -0.39 -0.23 16 51 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 391.48 15.07 5.90 5.90 Total: -1.00 -32.62 391.48 -9.86 -42.48 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -8.39 Total: 9.69 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: -3.07 Total: -17.39 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: 0.29 Total: -48.29 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.08 Total: -9.58 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.62 -9.86 -42.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602545746.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.071 kcal (2) G-P(sol) polarization free energy of solvation -32.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds