Wall clock time and date at job start Tue Mar 31 2020 16:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 110.05300 * 2 1 4 4 C 1.54002 * 109.91469 * 121.19231 * 2 1 3 5 5 H 1.08995 * 110.32528 * 239.66222 * 4 2 1 6 6 C 1.50698 * 110.32689 * 1.77647 * 4 2 1 7 7 C 1.38238 * 119.99896 * 249.71729 * 6 4 2 8 8 C 1.38234 * 119.99846 * 180.02562 * 7 6 4 9 9 C 1.38236 * 120.00058 * 359.97438 * 8 7 6 10 10 C 1.38234 * 120.00376 * 0.25490 * 9 8 7 11 11 C 1.38233 * 120.00146 * 69.68873 * 6 4 2 12 12 C 1.54618 * 105.13318 * 120.71776 * 4 2 1 13 13 C 1.54944 * 102.83770 * 21.80164 * 12 4 2 14 14 N 1.47718 * 109.94829 * 238.68647 * 2 1 3 15 15 C 1.34778 * 127.02777 * 35.19643 * 14 2 1 16 16 O 1.21283 * 120.00299 * 359.93316 * 15 14 2 17 17 C 1.50704 * 119.99788 * 179.97438 * 15 14 2 18 18 H 1.08999 * 109.47409 * 320.00355 * 17 15 14 19 19 N 1.46903 * 109.47099 * 199.99597 * 17 15 14 20 20 C 1.53006 * 109.46957 * 79.99899 * 17 15 14 21 21 C 1.52997 * 109.47201 * 184.99851 * 20 17 15 22 22 C 1.50696 * 109.47337 * 179.97438 * 21 20 17 23 23 H 1.08001 * 120.00050 * 0.02562 * 22 21 20 24 24 C 1.37875 * 120.00215 * 179.97438 * 22 21 20 25 25 N 1.31519 * 120.00269 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 119.99835 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.47208 * 89.99864 * 26 24 22 28 28 H 1.48498 * 109.47158 * 209.99496 * 26 24 22 29 29 H 1.48500 * 109.47269 * 329.99670 * 26 24 22 30 30 H 1.09000 * 109.47272 * 290.55798 * 1 2 3 31 31 H 1.08993 * 109.47408 * 50.56290 * 1 2 3 32 32 H 1.09005 * 109.46916 * 170.55777 * 1 2 3 33 33 H 1.09008 * 109.46824 * 181.19324 * 3 2 1 34 34 H 1.09001 * 109.47627 * 301.18760 * 3 2 1 35 35 H 1.08994 * 109.47395 * 61.19638 * 3 2 1 36 36 H 1.07994 * 120.00473 * 359.97438 * 7 6 4 37 37 H 1.08001 * 119.99962 * 179.97438 * 8 7 6 38 38 H 1.08000 * 120.00137 * 179.97438 * 9 8 7 39 39 H 1.08003 * 120.00553 * 179.72341 * 10 9 8 40 40 H 1.08001 * 119.99842 * 0.02562 * 11 6 4 41 41 H 1.08998 * 110.73831 * 140.13360 * 12 4 2 42 42 H 1.09001 * 110.74145 * 263.27916 * 12 4 2 43 43 H 1.08996 * 110.66337 * 81.06283 * 13 12 4 44 44 H 1.09002 * 110.65837 * 204.01783 * 13 12 4 45 45 H 1.00894 * 111.00334 * 300.00329 * 19 17 15 46 46 H 1.00900 * 110.99658 * 63.95927 * 19 17 15 47 47 H 1.08998 * 109.47088 * 305.00448 * 20 17 15 48 48 H 1.09005 * 109.46936 * 65.00016 * 20 17 15 49 49 H 1.09002 * 109.47119 * 300.00378 * 21 20 17 50 50 H 1.09001 * 109.46735 * 59.99847 * 21 20 17 51 51 H 0.97001 * 119.99974 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0546 1.4372 0.0000 4 6 2.0546 -0.7499 1.2386 5 1 2.6689 -0.0886 1.8495 6 6 0.9049 -1.2915 2.0485 7 6 0.6129 -0.7461 3.2847 8 6 -0.4414 -1.2432 4.0279 9 6 -1.2040 -2.2853 3.5346 10 6 -0.9091 -2.8339 2.3005 11 6 0.1419 -2.3332 1.5550 12 6 2.9089 -1.9096 0.6766 13 6 3.2673 -1.4145 -0.7473 14 7 2.0340 -0.7217 -1.1863 15 6 1.4844 -0.7442 -2.4167 16 8 0.4645 -0.1259 -2.6368 17 6 2.1367 -1.5386 -3.5188 18 1 3.2190 -1.4256 -3.4566 19 7 1.6670 -1.0466 -4.8209 20 6 1.7687 -3.0162 -3.3690 21 6 2.5289 -3.8392 -4.4108 22 6 2.1671 -5.2946 -4.2629 23 1 1.4647 -5.6018 -3.5021 24 6 2.7318 -6.2339 -5.0993 25 7 2.4156 -7.5040 -4.9706 26 14 3.9461 -5.7026 -6.4157 27 1 5.3229 -5.7327 -5.8602 28 1 3.8588 -6.6293 -7.5727 29 1 3.6218 -4.3234 -6.8605 30 1 -0.3634 0.3609 0.9622 31 1 -0.3634 0.6528 -0.7936 32 1 -0.3633 -1.0138 -0.1686 33 1 3.1444 1.4262 -0.0214 34 1 1.6793 1.9611 -0.8791 35 1 1.7141 1.9483 0.9005 36 1 1.2089 0.0678 3.6704 37 1 -0.6692 -0.8174 4.9939 38 1 -2.0274 -2.6740 4.1154 39 1 -1.5021 -3.6510 1.9170 40 1 0.3700 -2.7592 0.5891 41 1 3.8094 -2.0504 1.2742 42 1 2.3282 -2.8310 0.6331 43 1 4.1070 -0.7205 -0.7131 44 1 3.4922 -2.2566 -1.4019 45 1 0.6658 -1.1407 -4.9033 46 1 1.9541 -0.0911 -4.9714 47 1 2.0372 -3.3579 -2.3694 48 1 0.6963 -3.1406 -3.5196 49 1 2.2604 -3.4974 -5.4104 50 1 3.6013 -3.7147 -4.2602 51 1 2.8132 -8.1649 -5.5588 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602545746.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:22 Heat of formation + Delta-G solvation = -34.521006 kcal Electronic energy + Delta-G solvation = -29642.680366 eV Core-core repulsion = 25926.444746 eV Total energy + Delta-G solvation = -3716.235620 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.03712 -40.32565 -38.64937 -36.87769 -34.83930 -34.09757 -33.18063 -32.30888 -31.83537 -30.86431 -28.41105 -28.10351 -26.71010 -25.43352 -23.83043 -23.15233 -22.92215 -21.92690 -20.74434 -19.58532 -18.81791 -17.98129 -17.78186 -17.25868 -16.84583 -16.42423 -16.20015 -16.07759 -15.77192 -15.60053 -15.00618 -14.95565 -14.68501 -14.67445 -14.28309 -14.12243 -14.02579 -13.94261 -13.50821 -13.47140 -13.43103 -12.97595 -12.86534 -12.80520 -12.61754 -12.48766 -12.25087 -12.11222 -11.95123 -11.79384 -11.74429 -11.62775 -11.56191 -11.50322 -11.27510 -10.95923 -10.71167 -9.80150 -9.75296 -9.64437 -9.45437 -8.25437 -6.28897 0.44710 0.51822 1.39140 1.43079 1.53542 1.57135 1.93994 2.41227 2.84896 3.11028 3.40159 3.54559 3.58491 3.64057 3.85591 4.01983 4.05684 4.10437 4.15838 4.17844 4.23505 4.28408 4.35660 4.41815 4.50254 4.60081 4.63949 4.67689 4.69013 4.76370 4.78248 4.80030 4.90851 4.96599 5.06317 5.09487 5.12899 5.16172 5.20829 5.26204 5.30996 5.47112 5.52010 5.60165 5.63426 5.65563 5.72267 5.75104 6.04978 6.13923 6.31431 6.46488 6.53929 6.79149 7.12011 7.35653 8.91462 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013626 B = 0.003439 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.361366 B = 8140.062475 C = 9215.149596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.162 3.838 3 C -0.144 4.144 4 C -0.048 4.048 5 H 0.123 0.877 6 C -0.072 4.072 7 C -0.118 4.118 8 C -0.123 4.123 9 C -0.131 4.131 10 C -0.139 4.139 11 C -0.123 4.123 12 C -0.127 4.127 13 C 0.087 3.913 14 N -0.609 5.609 15 C 0.503 3.497 16 O -0.577 6.577 17 C 0.088 3.912 18 H 0.115 0.885 19 N -0.817 5.817 20 C -0.074 4.074 21 C 0.006 3.994 22 C -0.530 4.530 23 H 0.026 0.974 24 C 0.004 3.996 25 N -0.954 5.954 26 Si 0.951 3.049 27 H -0.262 1.262 28 H -0.289 1.289 29 H -0.246 1.246 30 H 0.068 0.932 31 H 0.045 0.955 32 H 0.039 0.961 33 H 0.076 0.924 34 H 0.038 0.962 35 H 0.085 0.915 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.136 0.864 39 H 0.117 0.883 40 H 0.098 0.902 41 H 0.112 0.888 42 H 0.060 0.940 43 H 0.104 0.896 44 H 0.082 0.918 45 H 0.345 0.655 46 H 0.348 0.652 47 H 0.061 0.939 48 H 0.034 0.966 49 H 0.028 0.972 50 H 0.022 0.978 51 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.229 19.980 19.288 27.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.078 3.922 3 C -0.202 4.202 4 C -0.066 4.066 5 H 0.141 0.859 6 C -0.072 4.072 7 C -0.136 4.136 8 C -0.141 4.141 9 C -0.149 4.149 10 C -0.157 4.157 11 C -0.141 4.141 12 C -0.165 4.165 13 C -0.035 4.035 14 N -0.342 5.342 15 C 0.291 3.709 16 O -0.457 6.457 17 C -0.028 4.028 18 H 0.133 0.867 19 N -0.346 5.346 20 C -0.113 4.113 21 C -0.032 4.032 22 C -0.568 4.568 23 H 0.044 0.956 24 C -0.192 4.192 25 N -0.595 5.595 26 Si 0.775 3.225 27 H -0.187 1.187 28 H -0.215 1.215 29 H -0.169 1.169 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.095 0.905 34 H 0.057 0.943 35 H 0.103 0.897 36 H 0.166 0.834 37 H 0.164 0.836 38 H 0.153 0.847 39 H 0.135 0.865 40 H 0.116 0.884 41 H 0.130 0.870 42 H 0.079 0.921 43 H 0.122 0.878 44 H 0.100 0.900 45 H 0.158 0.842 46 H 0.162 0.838 47 H 0.080 0.920 48 H 0.053 0.947 49 H 0.046 0.954 50 H 0.041 0.959 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.137 19.569 18.670 27.131 hybrid contribution -0.768 -0.151 -0.366 0.864 sum 1.369 19.418 18.305 26.721 Atomic orbital electron populations 1.22158 0.94921 1.01173 1.01271 1.21228 0.93930 0.92777 0.84257 1.22091 1.02084 0.93641 1.02390 1.21222 0.94378 0.97115 0.93929 0.85864 1.19705 0.96702 0.95580 0.95200 1.21329 0.98183 1.00417 0.93662 1.21453 0.95331 0.96567 1.00719 1.21390 1.00486 0.97282 0.95704 1.21312 0.97988 1.00553 0.95884 1.21021 0.96475 0.97534 0.99043 1.22896 1.01115 0.97281 0.95229 1.22891 0.87007 0.97616 0.96014 1.49167 1.27017 1.49330 1.08690 1.22010 0.84308 0.81024 0.83570 1.90625 1.25706 1.46943 1.82425 1.21620 1.00833 0.94311 0.86016 0.86744 1.59043 1.19887 1.27505 1.28172 1.21215 0.99295 0.91004 0.99772 1.19342 0.95564 0.92198 0.96090 1.21518 1.25594 0.92843 1.16890 0.95591 1.26001 0.98760 0.94587 0.99892 1.70085 1.46196 1.02413 1.40854 0.85637 0.79295 0.79330 0.78280 1.18705 1.21526 1.16895 0.91309 0.93561 0.94188 0.90472 0.94310 0.89667 0.83436 0.83642 0.84657 0.86484 0.88406 0.86991 0.92111 0.87802 0.89959 0.84184 0.83849 0.92027 0.94694 0.95364 0.95927 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 6.28 71.98 0.45 -3.13 16 2 C 0.16 3.36 0.96 3.71 0.00 3.36 16 3 C -0.14 -2.40 8.61 71.98 0.62 -1.78 16 4 C -0.05 -0.76 2.85 -10.65 -0.03 -0.79 16 5 H 0.12 1.25 7.51 -2.39 -0.02 1.23 16 6 C -0.07 -1.35 3.18 -19.87 -0.06 -1.41 16 7 C -0.12 -1.78 9.54 22.27 0.21 -1.57 16 8 C -0.12 -1.85 10.05 22.27 0.22 -1.63 16 9 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 10 C -0.14 -3.14 10.05 22.27 0.22 -2.92 16 11 C -0.12 -2.93 6.44 22.27 0.14 -2.79 16 12 C -0.13 -2.16 6.46 31.81 0.21 -1.96 16 13 C 0.09 1.63 6.67 86.73 0.58 2.20 16 14 N -0.61 -14.78 2.84 -762.48 -2.17 -16.95 16 15 C 0.50 15.47 6.92 87.66 0.61 16.08 16 16 O -0.58 -20.96 14.23 -3.04 -0.04 -21.00 16 17 C 0.09 2.75 2.38 44.17 0.11 2.86 16 18 H 0.11 3.15 7.56 -2.39 -0.02 3.13 16 19 N -0.82 -25.50 8.44 -171.78 -1.45 -26.95 16 20 C -0.07 -2.93 4.62 30.60 0.14 -2.79 16 21 C 0.01 0.26 3.93 29.85 0.12 0.38 16 22 C -0.53 -30.96 9.66 25.60 0.25 -30.71 16 23 H 0.03 1.68 7.99 -2.91 -0.02 1.65 16 24 C 0.00 0.23 5.47 84.65 0.46 0.69 16 25 N -0.95 -60.76 13.96 21.45 0.30 -60.46 16 26 Si 0.95 44.87 27.47 68.60 1.88 46.75 16 27 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 28 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 29 H -0.25 -10.94 6.54 99.48 0.65 -10.29 16 30 H 0.07 1.57 7.01 -2.39 -0.02 1.56 16 31 H 0.05 1.43 6.60 -2.39 -0.02 1.41 16 32 H 0.04 1.22 5.83 -2.38 -0.01 1.21 16 33 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.04 0.82 8.14 -2.39 -0.02 0.81 16 35 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.15 1.36 8.00 -2.91 -0.02 1.34 16 37 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 38 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 39 H 0.12 2.57 8.06 -2.91 -0.02 2.55 16 40 H 0.10 2.78 6.64 -2.91 -0.02 2.76 16 41 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.06 1.34 6.19 -2.39 -0.01 1.33 16 43 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.08 1.78 6.02 -2.39 -0.01 1.76 16 45 H 0.34 11.40 8.58 -89.70 -0.77 10.63 16 46 H 0.35 9.19 9.06 -89.69 -0.81 8.37 16 47 H 0.06 2.36 6.99 -2.39 -0.02 2.34 16 48 H 0.03 1.51 8.14 -2.38 -0.02 1.49 16 49 H 0.03 1.35 6.81 -2.39 -0.02 1.34 16 50 H 0.02 0.99 7.57 -2.39 -0.02 0.97 16 51 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -74.23 391.48 2.29 -71.94 By element: Atomic # 1 Polarization: 35.43 SS G_CDS: -0.70 Total: 34.72 kcal Atomic # 6 Polarization: -32.52 SS G_CDS: 4.47 Total: -28.05 kcal Atomic # 7 Polarization: -101.04 SS G_CDS: -3.32 Total: -104.36 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.04 Total: -21.00 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.88 Total: 46.75 kcal Total: -74.23 2.29 -71.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602545746.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.415 kcal (2) G-P(sol) polarization free energy of solvation -74.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds