Wall clock time and date at job start Tue Mar 31 2020 16:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.46904 * 2 1 4 4 C 1.38231 * 119.99744 * 90.00617 * 3 2 1 5 5 C 1.38238 * 120.00143 * 180.02562 * 4 3 2 6 6 C 1.38233 * 120.00035 * 359.95489 * 5 4 3 7 7 C 1.50699 * 120.00302 * 180.02562 * 6 5 4 8 8 H 1.08995 * 109.47006 * 359.97438 * 7 6 5 9 9 C 1.53000 * 109.47015 * 240.00013 * 7 6 5 10 10 C 1.50693 * 109.47023 * 119.99488 * 7 6 5 11 11 O 1.21286 * 120.00527 * 0.02562 * 10 7 6 12 12 N 1.34780 * 119.99690 * 179.97438 * 10 7 6 13 13 C 1.46503 * 119.99987 * 180.02562 * 12 10 7 14 14 C 1.53071 * 109.45178 * 84.78906 * 13 12 10 15 15 C 1.53201 * 109.29371 * 181.24494 * 14 13 12 16 16 N 1.46928 * 108.89275 * 305.57634 * 15 14 13 17 17 C 1.36934 * 120.63265 * 233.51651 * 16 15 14 18 18 H 1.07997 * 119.99862 * 151.82898 * 17 16 15 19 19 C 1.38806 * 120.00015 * 331.83027 * 17 16 15 20 20 N 1.31624 * 120.00191 * 343.08772 * 19 17 16 21 21 Si 1.86800 * 120.00146 * 163.08448 * 19 17 16 22 22 H 1.48503 * 109.47142 * 60.00161 * 21 19 17 23 23 H 1.48498 * 109.47084 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47267 * 300.00095 * 21 19 17 25 25 C 1.46932 * 118.73342 * 53.53882 * 16 15 14 26 26 C 1.53045 * 109.45960 * 205.00187 * 13 12 10 27 27 C 1.38237 * 119.99691 * 0.27216 * 6 5 4 28 28 C 1.38231 * 120.00344 * 270.02206 * 3 2 1 29 29 H 1.09000 * 109.47189 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47176 * 300.00153 * 1 2 3 31 31 H 1.09006 * 109.47028 * 59.99666 * 1 2 3 32 32 H 1.09006 * 109.47239 * 240.00525 * 2 1 3 33 33 H 1.08994 * 109.47441 * 120.00299 * 2 1 3 34 34 H 1.08009 * 120.00094 * 359.97438 * 4 3 2 35 35 H 1.08005 * 119.99821 * 179.97438 * 5 4 3 36 36 H 1.08996 * 109.47621 * 59.99671 * 9 7 6 37 37 H 1.08999 * 109.46930 * 180.02562 * 9 7 6 38 38 H 1.09008 * 109.46683 * 299.99592 * 9 7 6 39 39 H 0.96995 * 120.00081 * 359.97438 * 12 10 7 40 40 H 1.09001 * 109.45637 * 324.97326 * 13 12 10 41 41 H 1.09002 * 109.39343 * 61.36736 * 14 13 12 42 42 H 1.09003 * 109.62467 * 301.25963 * 14 13 12 43 43 H 1.09000 * 109.58250 * 185.72113 * 15 14 13 44 44 H 1.08995 * 109.58477 * 65.43833 * 15 14 13 45 45 H 0.96995 * 120.00379 * 180.02562 * 20 19 17 46 46 H 1.08996 * 109.59017 * 66.18099 * 25 16 15 47 47 H 1.09009 * 109.58200 * 186.46074 * 25 16 15 48 48 H 1.09002 * 109.49555 * 58.66185 * 26 13 12 49 49 H 1.08999 * 109.49562 * 298.56688 * 26 13 12 50 50 H 1.08005 * 119.99956 * 179.72931 * 27 6 5 51 51 H 1.08002 * 119.99725 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0724 1.1971 5 6 2.7230 3.3759 1.1972 6 6 2.9536 4.0276 0.0002 7 6 3.4559 5.4484 0.0002 8 1 3.5763 5.7911 1.0278 9 6 2.4482 6.3455 -0.7213 10 6 4.7836 5.5118 -0.7098 11 8 5.2736 4.5027 -1.1709 12 7 5.4261 6.6901 -0.8332 13 6 6.7166 6.7520 -1.5240 14 6 6.4824 6.8834 -3.0309 15 6 7.8336 6.9164 -3.7522 16 7 8.6570 7.9856 -3.1712 17 6 9.2152 8.9483 -3.9693 18 1 9.4130 9.9323 -3.5705 19 6 9.5267 8.6594 -5.2907 20 7 9.6052 7.4076 -5.6898 21 14 9.8346 10.0471 -6.5026 22 1 10.9807 10.8675 -6.0350 23 1 10.1452 9.4778 -7.8385 24 1 8.6221 10.8992 -6.5980 25 6 8.8706 8.0020 -1.7175 26 6 7.5081 7.9604 -1.0185 27 6 2.7187 3.3776 -1.1970 28 6 2.2622 2.0727 -1.1971 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 2.0824 1.5633 2.1325 35 1 2.9026 3.8851 2.1326 36 1 1.4879 6.2996 -0.2078 37 1 2.8117 7.3731 -0.7217 38 1 2.3275 6.0029 -1.7491 39 1 5.0337 7.4974 -0.4655 40 1 7.2793 5.8400 -1.3243 41 1 5.9392 7.8064 -3.2336 42 1 5.9009 6.0329 -3.3866 43 1 7.6768 7.1116 -4.8130 44 1 8.3378 5.9582 -3.6275 45 1 9.8232 7.2056 -6.6131 46 1 9.4582 7.1320 -1.4247 47 1 9.4003 8.9122 -1.4363 48 1 7.6540 7.8751 0.0583 49 1 6.9573 8.8745 -1.2402 50 1 2.8947 3.8881 -2.1323 51 1 2.0815 1.5639 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609328589.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:46 Heat of formation + Delta-G solvation = -13.668498 kcal Electronic energy + Delta-G solvation = -28214.682380 eV Core-core repulsion = 24499.350993 eV Total energy + Delta-G solvation = -3715.331388 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 2.70 seconds Orbital eigenvalues (eV) -40.36854 -39.09110 -37.34986 -35.17483 -34.39788 -32.93966 -31.89853 -30.97179 -30.03376 -29.47125 -28.54789 -25.41437 -24.76365 -23.31226 -22.82037 -22.23513 -21.82816 -20.75421 -19.84992 -19.16038 -17.17216 -16.68845 -16.50965 -15.72557 -15.61296 -15.07297 -14.76114 -14.68580 -14.04627 -13.97604 -13.86483 -13.70464 -13.53342 -13.49406 -13.21245 -12.99303 -12.79037 -12.64703 -12.44418 -12.35711 -12.08502 -11.76005 -11.60871 -11.48292 -11.33421 -11.11338 -10.92477 -10.89113 -10.88407 -10.71606 -10.38056 -10.25128 -10.05147 -9.75534 -9.74007 -9.39416 -8.90479 -8.67313 -8.57291 -8.40727 -6.67570 -5.77730 -3.21064 1.25612 1.40446 2.83903 3.34494 3.39189 3.44608 3.45423 3.78778 4.41862 4.49829 4.60033 4.64987 4.77298 4.91778 4.97240 5.05894 5.12708 5.13330 5.30538 5.32662 5.39066 5.41582 5.44122 5.46602 5.51634 5.62053 5.64242 5.65476 5.74777 5.84343 5.88346 5.91648 6.00188 6.04589 6.09467 6.24980 6.36594 6.38131 6.45134 6.55603 6.58145 6.62457 6.65856 6.78301 6.93062 6.96186 6.97043 7.38450 7.68354 7.76757 7.79821 8.45343 8.47179 9.21662 9.84964 10.41945 11.30771 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022560 B = 0.002267 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.842172 B =12349.940082 C =12879.413765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.085 4.085 4 C -0.122 4.122 5 C -0.111 4.111 6 C -0.068 4.068 7 C -0.073 4.073 8 H 0.100 0.900 9 C -0.140 4.140 10 C 0.513 3.487 11 O -0.530 6.530 12 N -0.724 5.724 13 C 0.151 3.849 14 C -0.145 4.145 15 C 0.174 3.826 16 N -0.592 5.592 17 C -0.255 4.255 18 H 0.065 0.935 19 C 0.002 3.998 20 N -0.901 5.901 21 Si 0.903 3.097 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.148 3.852 26 C -0.138 4.138 27 C -0.079 4.079 28 C -0.119 4.119 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.394 0.606 40 H 0.080 0.920 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.089 0.911 44 H 0.020 0.980 45 H 0.255 0.745 46 H 0.020 0.980 47 H 0.058 0.942 48 H 0.054 0.946 49 H 0.062 0.938 50 H 0.119 0.881 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.064 -7.907 14.731 25.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.085 4.085 4 C -0.140 4.140 5 C -0.129 4.129 6 C -0.069 4.069 7 C -0.094 4.094 8 H 0.119 0.881 9 C -0.198 4.198 10 C 0.298 3.702 11 O -0.406 6.406 12 N -0.375 5.375 13 C 0.048 3.952 14 C -0.185 4.185 15 C 0.047 3.953 16 N -0.315 5.315 17 C -0.384 4.384 18 H 0.083 0.917 19 C -0.196 4.196 20 N -0.545 5.545 21 Si 0.733 3.267 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.021 3.979 26 C -0.178 4.178 27 C -0.097 4.097 28 C -0.137 4.137 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.227 0.773 40 H 0.098 0.902 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.107 0.893 44 H 0.038 0.962 45 H 0.065 0.935 46 H 0.037 0.963 47 H 0.076 0.924 48 H 0.073 0.927 49 H 0.081 0.919 50 H 0.137 0.863 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -18.625 -8.704 14.208 24.991 hybrid contribution 0.068 1.102 -0.478 1.203 sum -18.557 -7.602 13.730 24.304 Atomic orbital electron populations 1.21743 0.94845 1.01535 1.02169 1.20535 0.96043 0.92884 1.02787 1.19856 0.99307 0.96058 0.93268 1.20889 1.01024 0.94786 0.97349 1.20949 0.99913 0.94919 0.97091 1.19286 0.99585 0.94409 0.93573 1.20311 0.93539 0.94226 1.01324 0.88148 1.21789 0.98333 0.98643 1.00988 1.20395 0.86161 0.83652 0.79994 1.90737 1.67309 1.34403 1.48112 1.46318 1.23013 1.09534 1.58610 1.21029 0.82332 0.99330 0.92517 1.22549 1.01399 1.00337 0.94231 1.20748 0.86044 0.90325 0.98163 1.44085 1.56196 1.30660 1.00541 1.19120 1.35719 0.90889 0.92718 0.91714 1.25072 0.99572 0.95931 0.99071 1.70026 1.51452 1.16428 1.16628 0.86366 0.78144 0.81653 0.80562 1.20875 1.21637 1.21059 1.20839 0.92154 0.99117 0.85789 1.22325 0.99487 0.97145 0.98860 1.20912 0.96530 0.94553 0.97677 1.20978 1.00411 0.94841 0.97456 0.92538 0.92640 0.92556 0.91072 0.91186 0.86387 0.86316 0.91407 0.91648 0.91750 0.77303 0.90179 0.92767 0.92930 0.89331 0.96202 0.93519 0.96256 0.92360 0.92688 0.91889 0.86251 0.86288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.89 37.16 0.37 -0.63 16 2 C -0.09 -0.68 6.06 -27.88 -0.17 -0.85 16 3 C -0.08 -0.89 5.13 -104.63 -0.54 -1.42 16 4 C -0.12 -1.25 9.70 -39.58 -0.38 -1.63 16 5 C -0.11 -1.18 9.67 -39.58 -0.38 -1.57 16 6 C -0.07 -0.81 4.39 -104.62 -0.46 -1.27 16 7 C -0.07 -0.78 2.90 -92.93 -0.27 -1.05 16 8 H 0.10 0.86 7.88 -51.93 -0.41 0.45 16 9 C -0.14 -1.23 8.90 37.16 0.33 -0.90 16 10 C 0.51 7.49 6.99 -10.99 -0.08 7.41 16 11 O -0.53 -10.07 14.79 5.55 0.08 -9.99 16 12 N -0.72 -9.98 4.97 -53.75 -0.27 -10.24 16 13 C 0.15 2.63 2.41 -67.87 -0.16 2.47 16 14 C -0.14 -2.90 5.66 -26.59 -0.15 -3.05 16 15 C 0.17 4.26 5.30 -3.71 -0.02 4.24 16 16 N -0.59 -14.84 3.00 -172.31 -0.52 -15.35 16 17 C -0.25 -6.97 9.58 -15.06 -0.14 -7.11 16 18 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16 19 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 20 N -0.90 -26.47 11.20 55.49 0.62 -25.85 16 21 Si 0.90 21.70 29.59 -169.99 -5.03 16.67 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 C 0.15 3.06 6.52 -3.71 -0.02 3.04 16 26 C -0.14 -2.29 5.55 -26.61 -0.15 -2.44 16 27 C -0.08 -1.00 7.94 -39.58 -0.31 -1.32 16 28 C -0.12 -1.37 9.70 -39.58 -0.38 -1.76 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 33 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 34 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 35 H 0.12 1.01 7.95 -52.48 -0.42 0.59 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.50 7.56 -51.93 -0.39 0.10 16 38 H 0.06 0.63 7.38 -51.92 -0.38 0.25 16 39 H 0.39 4.21 8.02 -40.82 -0.33 3.88 16 40 H 0.08 1.60 7.58 -51.93 -0.39 1.20 16 41 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.09 2.42 6.06 -51.93 -0.31 2.11 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.06 1.16 7.93 -51.92 -0.41 0.75 16 48 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 50 H 0.12 1.58 7.52 -52.48 -0.39 1.19 16 51 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 403.85 15.07 6.09 6.09 Total: -1.00 -32.37 403.85 -10.94 -43.32 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -8.91 Total: 3.22 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -3.01 Total: -7.86 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: -0.16 Total: -51.44 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.08 Total: -9.99 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.37 -10.94 -43.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609328589.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.649 kcal (2) G-P(sol) polarization free energy of solvation -32.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.70 seconds