Wall clock time and date at job start Tue Mar 31 2020 16:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.46904 * 2 1 4 4 C 1.38231 * 119.99744 * 90.00617 * 3 2 1 5 5 C 1.38238 * 120.00143 * 180.02562 * 4 3 2 6 6 C 1.38233 * 120.00035 * 359.95489 * 5 4 3 7 7 C 1.50699 * 120.00302 * 180.02562 * 6 5 4 8 8 H 1.08995 * 109.47006 * 359.97438 * 7 6 5 9 9 C 1.53000 * 109.47015 * 240.00013 * 7 6 5 10 10 C 1.50693 * 109.47023 * 119.99488 * 7 6 5 11 11 O 1.21286 * 120.00527 * 0.02562 * 10 7 6 12 12 N 1.34780 * 119.99690 * 179.97438 * 10 7 6 13 13 C 1.46503 * 119.99987 * 180.02562 * 12 10 7 14 14 C 1.53071 * 109.45178 * 84.78906 * 13 12 10 15 15 C 1.53201 * 109.29371 * 181.24494 * 14 13 12 16 16 N 1.46928 * 108.89275 * 305.57634 * 15 14 13 17 17 C 1.36934 * 120.63265 * 233.51651 * 16 15 14 18 18 H 1.07997 * 119.99862 * 151.82898 * 17 16 15 19 19 C 1.38806 * 120.00015 * 331.83027 * 17 16 15 20 20 N 1.31624 * 120.00191 * 343.08772 * 19 17 16 21 21 Si 1.86800 * 120.00146 * 163.08448 * 19 17 16 22 22 H 1.48503 * 109.47142 * 60.00161 * 21 19 17 23 23 H 1.48498 * 109.47084 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47267 * 300.00095 * 21 19 17 25 25 C 1.46932 * 118.73342 * 53.53882 * 16 15 14 26 26 C 1.53045 * 109.45960 * 205.00187 * 13 12 10 27 27 C 1.38237 * 119.99691 * 0.27216 * 6 5 4 28 28 C 1.38231 * 120.00344 * 270.02206 * 3 2 1 29 29 H 1.09000 * 109.47189 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47176 * 300.00153 * 1 2 3 31 31 H 1.09006 * 109.47028 * 59.99666 * 1 2 3 32 32 H 1.09006 * 109.47239 * 240.00525 * 2 1 3 33 33 H 1.08994 * 109.47441 * 120.00299 * 2 1 3 34 34 H 1.08009 * 120.00094 * 359.97438 * 4 3 2 35 35 H 1.08005 * 119.99821 * 179.97438 * 5 4 3 36 36 H 1.08996 * 109.47621 * 59.99671 * 9 7 6 37 37 H 1.08999 * 109.46930 * 180.02562 * 9 7 6 38 38 H 1.09008 * 109.46683 * 299.99592 * 9 7 6 39 39 H 0.96995 * 120.00081 * 359.97438 * 12 10 7 40 40 H 1.09001 * 109.45637 * 324.97326 * 13 12 10 41 41 H 1.09002 * 109.39343 * 61.36736 * 14 13 12 42 42 H 1.09003 * 109.62467 * 301.25963 * 14 13 12 43 43 H 1.09000 * 109.58250 * 185.72113 * 15 14 13 44 44 H 1.08995 * 109.58477 * 65.43833 * 15 14 13 45 45 H 0.96995 * 120.00379 * 180.02562 * 20 19 17 46 46 H 1.08996 * 109.59017 * 66.18099 * 25 16 15 47 47 H 1.09009 * 109.58200 * 186.46074 * 25 16 15 48 48 H 1.09002 * 109.49555 * 58.66185 * 26 13 12 49 49 H 1.08999 * 109.49562 * 298.56688 * 26 13 12 50 50 H 1.08005 * 119.99956 * 179.72931 * 27 6 5 51 51 H 1.08002 * 119.99725 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0724 1.1971 5 6 2.7230 3.3759 1.1972 6 6 2.9536 4.0276 0.0002 7 6 3.4559 5.4484 0.0002 8 1 3.5763 5.7911 1.0278 9 6 2.4482 6.3455 -0.7213 10 6 4.7836 5.5118 -0.7098 11 8 5.2736 4.5027 -1.1709 12 7 5.4261 6.6901 -0.8332 13 6 6.7166 6.7520 -1.5240 14 6 6.4824 6.8834 -3.0309 15 6 7.8336 6.9164 -3.7522 16 7 8.6570 7.9856 -3.1712 17 6 9.2152 8.9483 -3.9693 18 1 9.4130 9.9323 -3.5705 19 6 9.5267 8.6594 -5.2907 20 7 9.6052 7.4076 -5.6898 21 14 9.8346 10.0471 -6.5026 22 1 10.9807 10.8675 -6.0350 23 1 10.1452 9.4778 -7.8385 24 1 8.6221 10.8992 -6.5980 25 6 8.8706 8.0020 -1.7175 26 6 7.5081 7.9604 -1.0185 27 6 2.7187 3.3776 -1.1970 28 6 2.2622 2.0727 -1.1971 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 2.0824 1.5633 2.1325 35 1 2.9026 3.8851 2.1326 36 1 1.4879 6.2996 -0.2078 37 1 2.8117 7.3731 -0.7217 38 1 2.3275 6.0029 -1.7491 39 1 5.0337 7.4974 -0.4655 40 1 7.2793 5.8400 -1.3243 41 1 5.9392 7.8064 -3.2336 42 1 5.9009 6.0329 -3.3866 43 1 7.6768 7.1116 -4.8130 44 1 8.3378 5.9582 -3.6275 45 1 9.8232 7.2056 -6.6131 46 1 9.4582 7.1320 -1.4247 47 1 9.4003 8.9122 -1.4363 48 1 7.6540 7.8751 0.0583 49 1 6.9573 8.8745 -1.2402 50 1 2.8947 3.8881 -2.1323 51 1 2.0815 1.5639 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609328589.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:43 Heat of formation + Delta-G solvation = -31.436063 kcal Electronic energy + Delta-G solvation = -28215.452840 eV Core-core repulsion = 24499.350993 eV Total energy + Delta-G solvation = -3716.101847 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -41.43019 -40.13304 -38.91025 -36.12034 -35.89843 -34.11747 -33.31308 -31.80510 -31.73461 -31.12932 -29.34565 -27.05316 -25.78219 -24.41095 -23.92557 -23.66517 -23.20826 -21.70855 -21.21226 -20.54813 -18.86102 -17.90810 -17.65766 -16.93720 -16.67474 -16.44515 -15.96143 -15.84398 -15.55517 -15.37024 -14.96161 -14.76308 -14.66613 -14.60589 -14.42770 -14.18618 -14.08212 -13.97980 -13.35280 -13.31714 -13.20735 -13.02160 -12.89637 -12.64949 -12.57062 -12.51302 -12.27895 -12.13716 -12.08349 -12.01337 -11.86332 -11.64522 -11.62195 -11.53805 -11.37952 -10.68966 -10.58297 -9.97061 -9.75313 -9.39641 -8.72494 -7.88310 -5.35151 0.42342 0.56004 1.46769 1.49602 1.56398 1.69782 2.22919 2.50879 2.91121 3.27443 3.58466 3.64508 3.78301 3.87570 3.94394 4.02362 4.08193 4.14309 4.21162 4.29048 4.32960 4.42544 4.46253 4.52720 4.58953 4.65378 4.70098 4.73278 4.78883 4.84641 4.86129 4.92929 5.04637 5.06703 5.07054 5.09223 5.12194 5.18386 5.23367 5.27310 5.30458 5.38791 5.44693 5.54576 5.58776 5.62921 5.67933 5.72981 5.75875 6.15686 6.37328 6.65897 7.11992 7.35557 7.83027 8.36121 9.18621 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022560 B = 0.002267 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.842172 B =12349.940082 C =12879.413765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.090 4.090 4 C -0.127 4.127 5 C -0.114 4.114 6 C -0.085 4.085 7 C -0.061 4.061 8 H 0.134 0.866 9 C -0.137 4.137 10 C 0.510 3.490 11 O -0.580 6.580 12 N -0.709 5.709 13 C 0.163 3.837 14 C -0.128 4.128 15 C 0.183 3.817 16 N -0.609 5.609 17 C -0.262 4.262 18 H 0.075 0.925 19 C -0.056 4.056 20 N -0.940 5.940 21 Si 0.971 3.029 22 H -0.272 1.272 23 H -0.298 1.298 24 H -0.276 1.276 25 C 0.140 3.860 26 C -0.121 4.121 27 C -0.101 4.101 28 C -0.137 4.137 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.045 0.955 39 H 0.415 0.585 40 H 0.052 0.948 41 H 0.062 0.938 42 H 0.042 0.958 43 H 0.054 0.946 44 H -0.015 1.015 45 H 0.249 0.751 46 H 0.009 0.991 47 H 0.068 0.932 48 H 0.092 0.908 49 H 0.077 0.923 50 H 0.100 0.900 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.821 -6.410 17.681 28.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 C -0.090 4.090 4 C -0.145 4.145 5 C -0.132 4.132 6 C -0.085 4.085 7 C -0.082 4.082 8 H 0.151 0.849 9 C -0.194 4.194 10 C 0.298 3.702 11 O -0.459 6.459 12 N -0.361 5.361 13 C 0.058 3.942 14 C -0.168 4.168 15 C 0.056 3.944 16 N -0.332 5.332 17 C -0.392 4.392 18 H 0.092 0.908 19 C -0.251 4.251 20 N -0.586 5.586 21 Si 0.799 3.201 22 H -0.198 1.198 23 H -0.224 1.224 24 H -0.202 1.202 25 C 0.014 3.986 26 C -0.160 4.160 27 C -0.119 4.119 28 C -0.155 4.155 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.161 0.839 35 H 0.163 0.837 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.064 0.936 39 H 0.252 0.748 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.060 0.940 43 H 0.072 0.928 44 H 0.003 0.997 45 H 0.058 0.942 46 H 0.027 0.973 47 H 0.087 0.913 48 H 0.110 0.890 49 H 0.095 0.905 50 H 0.119 0.881 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -20.415 -7.160 17.212 27.646 hybrid contribution 0.635 0.554 -1.358 1.598 sum -19.779 -6.606 15.854 26.196 Atomic orbital electron populations 1.21714 0.93839 1.02402 1.01959 1.20587 0.96851 0.91461 1.03318 1.20167 0.98683 0.97157 0.92981 1.21256 1.00224 0.94877 0.98156 1.21292 0.99142 0.95194 0.97558 1.19501 1.00082 0.95254 0.93691 1.20334 0.91122 0.94210 1.02572 0.84856 1.21804 0.98800 0.98905 0.99916 1.21174 0.87113 0.82794 0.79165 1.90727 1.68764 1.36222 1.50172 1.46018 1.21613 1.10534 1.57916 1.20612 0.84021 0.98706 0.90867 1.22281 0.98275 1.00196 0.96057 1.20450 0.88139 0.88777 0.97023 1.44335 1.56408 1.30126 1.02352 1.19537 1.34657 0.91712 0.93253 0.90779 1.25913 1.00171 0.98075 1.00973 1.70210 1.53279 1.18606 1.16470 0.85289 0.78391 0.78761 0.77699 1.19778 1.22445 1.20157 1.21056 0.94846 0.99117 0.83546 1.22123 0.96598 0.96936 1.00333 1.20941 0.97994 0.95341 0.97660 1.21151 1.01063 0.94808 0.98457 0.91138 0.92343 0.93265 0.91208 0.90002 0.83949 0.83686 0.89487 0.89917 0.93603 0.74827 0.93001 0.91935 0.93956 0.92755 0.99662 0.94199 0.97325 0.91318 0.89003 0.90459 0.88138 0.85999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.89 71.98 0.71 -1.01 16 2 C -0.08 -1.26 6.06 29.85 0.18 -1.07 16 3 C -0.09 -1.80 5.13 -19.87 -0.10 -1.91 16 4 C -0.13 -2.33 9.70 22.27 0.22 -2.12 16 5 C -0.11 -2.17 9.67 22.27 0.22 -1.96 16 6 C -0.08 -1.94 4.39 -19.87 -0.09 -2.02 16 7 C -0.06 -1.17 2.90 -12.29 -0.04 -1.21 16 8 H 0.13 1.69 7.88 -2.39 -0.02 1.67 16 9 C -0.14 -2.07 8.90 71.98 0.64 -1.43 16 10 C 0.51 14.36 6.99 87.65 0.61 14.97 16 11 O -0.58 -22.56 14.79 -3.05 -0.05 -22.60 16 12 N -0.71 -18.01 4.97 -442.34 -2.20 -20.21 16 13 C 0.16 5.54 2.41 45.03 0.11 5.65 16 14 C -0.13 -5.20 5.66 30.69 0.17 -5.03 16 15 C 0.18 9.40 5.30 86.37 0.46 9.86 16 16 N -0.61 -30.93 3.00 -699.07 -2.09 -33.02 16 17 C -0.26 -14.37 9.58 84.03 0.81 -13.56 16 18 H 0.07 3.86 7.88 -2.91 -0.02 3.84 16 19 C -0.06 -3.19 4.92 84.86 0.42 -2.78 16 20 N -0.94 -57.47 11.20 21.65 0.24 -57.23 16 21 Si 0.97 45.18 29.59 68.60 2.03 47.21 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 23 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 24 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 25 C 0.14 5.68 6.52 86.36 0.56 6.24 16 26 C -0.12 -3.67 5.55 30.67 0.17 -3.50 16 27 C -0.10 -2.67 7.94 22.27 0.18 -2.49 16 28 C -0.14 -3.26 9.70 22.27 0.22 -3.04 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.07 1.04 8.09 -2.38 -0.02 1.02 16 33 H 0.08 1.02 8.08 -2.39 -0.02 1.00 16 34 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 35 H 0.15 1.91 7.95 -2.91 -0.02 1.89 16 36 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.08 0.96 7.56 -2.39 -0.02 0.94 16 38 H 0.04 0.87 7.38 -2.38 -0.02 0.85 16 39 H 0.41 7.24 8.02 -92.71 -0.74 6.50 16 40 H 0.05 2.10 7.58 -2.39 -0.02 2.08 16 41 H 0.06 2.43 8.14 -2.39 -0.02 2.42 16 42 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.05 3.14 6.06 -2.39 -0.01 3.13 16 44 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 45 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 46 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 47 H 0.07 2.61 7.93 -2.38 -0.02 2.60 16 48 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 49 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 50 H 0.10 2.91 7.52 -2.91 -0.02 2.89 16 51 H 0.12 2.64 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -74.39 403.85 3.53 -70.86 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.15 Total: 21.43 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: 5.44 Total: -6.43 kcal Atomic # 7 Polarization: -106.41 SS G_CDS: -4.05 Total: -110.46 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.05 Total: -22.60 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -74.39 3.53 -70.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609328589.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.423 kcal (2) G-P(sol) polarization free energy of solvation -74.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds